Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27435

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
6,101,122	+				+1.1
6,101,123	-				+1.9
6,101,220	-		PFLU_RS27430	0.17	-3.0
6,101,220	-		PFLU_RS27430	0.17	+2.9
6,101,264	+		PFLU_RS27430	0.22	+0.5
6,101,264	+		PFLU_RS27430	0.22	+0.2
6,101,264	+		PFLU_RS27430	0.22	-0.1
6,101,264	+		PFLU_RS27430	0.22	+0.9
6,101,321	+		PFLU_RS27430	0.28	+0.4
6,101,321	+		PFLU_RS27430	0.28	-2.0
6,101,322	-		PFLU_RS27430	0.28	-0.6
6,101,437	+		PFLU_RS27430	0.39	+0.8
6,101,437	+		PFLU_RS27430	0.39	+1.1
6,101,437	+		PFLU_RS27430	0.39	-0.0
6,101,437	+		PFLU_RS27430	0.39	+0.1
6,101,437	+		PFLU_RS27430	0.39	+0.3
6,101,437	+		PFLU_RS27430	0.39	-0.7
6,101,437	+		PFLU_RS27430	0.39	+0.1
6,101,437	+		PFLU_RS27430	0.39	+0.9
6,101,437	+		PFLU_RS27430	0.39	+0.4
6,101,437	+		PFLU_RS27430	0.39	+1.2
6,101,437	+		PFLU_RS27430	0.39	+1.0
6,101,437	+		PFLU_RS27430	0.39	+0.2
6,101,438	-		PFLU_RS27430	0.40	+0.3
6,101,438	-		PFLU_RS27430	0.40	-1.5
6,101,438	-		PFLU_RS27430	0.40	-2.2
6,101,438	-		PFLU_RS27430	0.40	+0.4
6,101,438	-		PFLU_RS27430	0.40	+0.7
6,101,438	-		PFLU_RS27430	0.40	+1.4
6,101,438	-		PFLU_RS27430	0.40	+1.9
6,101,438	-		PFLU_RS27430	0.40	+0.5
6,101,438	-		PFLU_RS27430	0.40	+0.4
6,101,438	-		PFLU_RS27430	0.40	+0.1
6,101,438	-		PFLU_RS27430	0.40	-0.6
6,101,438	-		PFLU_RS27430	0.40	+0.7
6,101,438	-		PFLU_RS27430	0.40	-0.7
6,101,438	-		PFLU_RS27430	0.40	+0.5
6,101,438	-		PFLU_RS27430	0.40	+0.1
6,101,438	-		PFLU_RS27430	0.40	-0.7
6,101,438	-		PFLU_RS27430	0.40	+1.4
6,101,441	+		PFLU_RS27430	0.40	+0.6
6,101,441	+		PFLU_RS27430	0.40	+1.3
6,101,441	+		PFLU_RS27430	0.40	-0.5
6,101,441	+		PFLU_RS27430	0.40	+1.3
6,101,441	+		PFLU_RS27430	0.40	+1.2
6,101,442	-		PFLU_RS27430	0.40	+0.0
6,101,442	-		PFLU_RS27430	0.40	-1.6
6,101,442	-		PFLU_RS27430	0.40	+0.5
6,101,442	-		PFLU_RS27430	0.40	+1.5
6,101,442	-		PFLU_RS27430	0.40	+0.1
6,101,442	-		PFLU_RS27430	0.40	+1.3
6,101,442	-		PFLU_RS27430	0.40	+1.4
6,101,442	-		PFLU_RS27430	0.40	+1.4
6,101,495	+		PFLU_RS27430	0.45	+1.1
6,101,495	+		PFLU_RS27430	0.45	+1.0
6,101,495	+		PFLU_RS27430	0.45	-0.6
6,101,495	+		PFLU_RS27430	0.45	+0.4
6,101,495	+		PFLU_RS27430	0.45	+0.9
6,101,496	-		PFLU_RS27430	0.46	+0.5
6,101,496	-		PFLU_RS27430	0.46	+1.1
6,101,496	-		PFLU_RS27430	0.46	-2.0
6,101,715	+		PFLU_RS27430	0.68	+0.6
6,101,715	+		PFLU_RS27430	0.68	-1.0
6,101,715	+		PFLU_RS27430	0.68	+0.4
6,101,715	+		PFLU_RS27430	0.68	-1.8
6,101,715	+		PFLU_RS27430	0.68	+0.9
6,101,715	+		PFLU_RS27430	0.68	-0.1
6,101,715	+		PFLU_RS27430	0.68	-0.2
6,101,715	+		PFLU_RS27430	0.68	+0.1
6,101,715	+		PFLU_RS27430	0.68	-1.3
6,101,715	+		PFLU_RS27430	0.68	+0.1
6,101,715	+		PFLU_RS27430	0.68	-0.3
6,101,715	+		PFLU_RS27430	0.68	-0.3
6,101,715	+		PFLU_RS27430	0.68	+1.8
6,101,715	+		PFLU_RS27430	0.68	+0.5
6,101,715	+		PFLU_RS27430	0.68	-1.7
6,101,716	-		PFLU_RS27430	0.68	-0.7
6,101,716	-		PFLU_RS27430	0.68	-0.9
6,101,716	-		PFLU_RS27430	0.68	-0.3
6,101,716	-		PFLU_RS27430	0.68	-1.6
6,101,716	-		PFLU_RS27430	0.68	-1.8
6,101,716	-		PFLU_RS27430	0.68	+1.0
6,101,716	-		PFLU_RS27430	0.68	+1.5
6,101,716	-		PFLU_RS27430	0.68	-0.6
6,101,716	-		PFLU_RS27430	0.68	+0.3
6,101,716	-		PFLU_RS27430	0.68	+0.3
6,101,716	-		PFLU_RS27430	0.68	+0.1
6,101,716	-		PFLU_RS27430	0.68	+0.7
6,101,844	+		PFLU_RS27430	0.81	-0.0
6,101,844	+		PFLU_RS27430	0.81	+0.4
6,101,844	+		PFLU_RS27430	0.81	-1.1
6,101,844	+		PFLU_RS27430	0.81	-0.1
6,101,844	+		PFLU_RS27430	0.81	-0.2
6,101,844	+		PFLU_RS27430	0.81	+0.6
6,101,844	+		PFLU_RS27430	0.81	-1.5
6,101,844	+		PFLU_RS27430	0.81	+1.5
6,101,844	+		PFLU_RS27430	0.81	-1.3
6,101,844	+		PFLU_RS27430	0.81	+1.5
6,101,845	-		PFLU_RS27430	0.81	+0.8
6,101,845	-		PFLU_RS27430	0.81	+0.9
6,101,845	-		PFLU_RS27430	0.81	-1.1
6,101,845	-		PFLU_RS27430	0.81	+1.1
6,101,845	-		PFLU_RS27430	0.81	-0.4
6,101,845	-		PFLU_RS27430	0.81	-0.0
6,101,845	-		PFLU_RS27430	0.81	-0.2
6,101,845	-		PFLU_RS27430	0.81	-0.2
6,101,919	+		PFLU_RS27430	0.89	-1.1
6,101,919	+		PFLU_RS27430	0.89	+0.2
6,101,920	-		PFLU_RS27430	0.89	+2.1
6,101,920	-		PFLU_RS27430	0.89	-1.5
6,101,920	-		PFLU_RS27430	0.89	+0.8
6,101,920	-		PFLU_RS27430	0.89	-0.1
6,101,920	-		PFLU_RS27430	0.89	+0.3
6,101,921	+		PFLU_RS27430	0.89	-1.7
6,101,921	+		PFLU_RS27430	0.89	+0.2
6,101,921	+		PFLU_RS27430	0.89	+1.4
6,101,921	+		PFLU_RS27430	0.89	-0.1
6,101,921	+		PFLU_RS27430	0.89	+0.1
6,101,922	-		PFLU_RS27430	0.89	-0.8
6,101,922	-		PFLU_RS27430	0.89	+0.3
6,101,922	-		PFLU_RS27430	0.89	+1.3
6,101,979	+				-0.1
6,101,979	+				+0.0
6,101,979	+				-0.5
6,101,979	+				+0.7
6,101,979	+				+0.4
6,101,979	+				+0.8
6,101,979	+				-1.3
6,101,979	+				-0.9
6,101,980	-				+1.2
6,101,980	-				-1.6
6,101,980	-				-0.0
6,101,980	-				+1.0
6,102,048	+				-0.0
6,102,048	+				-0.4
6,102,048	+				+0.8
6,102,048	+				-0.6
6,102,048	+				+0.7
6,102,048	+				+0.5
6,102,048	+				-1.2
6,102,048	+				-0.9
6,102,048	+				-2.0
6,102,048	+				+0.7
6,102,048	+				-1.1
6,102,048	+				+0.6
6,102,049	-				+1.2
6,102,049	-				-1.1
6,102,049	-				+2.2
6,102,049	-				-1.1
6,102,049	-				-0.4
6,102,049	-				-0.1
6,102,049	-				+1.9
6,102,049	-				+1.5
6,102,049	-				+0.3
6,102,143	+				+0.1
6,102,143	+				-0.9
6,102,143	+				+0.7
6,102,143	+				+1.4
6,102,144	-				-2.1
6,102,144	-				+0.1
6,102,144	-				-0.3
6,102,252	-		PFLU_RS27435	0.19	-0.4
6,102,317	+		PFLU_RS27435	0.27	+0.8
6,102,317	+		PFLU_RS27435	0.27	-1.6
6,102,317	+		PFLU_RS27435	0.27	+0.1
6,102,317	+		PFLU_RS27435	0.27	-0.2
6,102,317	+		PFLU_RS27435	0.27	-0.3
6,102,317	+		PFLU_RS27435	0.27	-1.3
6,102,317	+		PFLU_RS27435	0.27	-0.8
6,102,317	+		PFLU_RS27435	0.27	-0.7
6,102,317	+		PFLU_RS27435	0.27	-0.8
6,102,318	-		PFLU_RS27435	0.27	-0.6
6,102,318	-		PFLU_RS27435	0.27	+0.1
6,102,359	+		PFLU_RS27435	0.33	-1.5
6,102,360	-		PFLU_RS27435	0.33	+0.1
6,102,360	-		PFLU_RS27435	0.33	+1.0
6,102,360	-		PFLU_RS27435	0.33	+0.7
6,102,487	+		PFLU_RS27435	0.49	+1.0
6,102,487	+		PFLU_RS27435	0.49	+0.8
6,102,488	-		PFLU_RS27435	0.49	-0.2
6,102,488	-		PFLU_RS27435	0.49	+0.1
6,102,488	-		PFLU_RS27435	0.49	-0.0
6,102,530	+		PFLU_RS27435	0.55	+0.3
6,102,530	+		PFLU_RS27435	0.55	+0.4
6,102,530	+		PFLU_RS27435	0.55	+1.0
6,102,530	+		PFLU_RS27435	0.55	+0.6
6,102,530	+		PFLU_RS27435	0.55	+0.8
6,102,530	+		PFLU_RS27435	0.55	-0.4
6,102,530	+		PFLU_RS27435	0.55	+0.1
6,102,530	+		PFLU_RS27435	0.55	-0.9
6,102,531	-		PFLU_RS27435	0.55	-0.5
6,102,531	-		PFLU_RS27435	0.55	-0.2
6,102,531	-		PFLU_RS27435	0.55	+1.3
6,102,531	-		PFLU_RS27435	0.55	+1.7
6,102,531	-		PFLU_RS27435	0.55	-0.3
6,102,531	-		PFLU_RS27435	0.55	+0.4
6,102,531	-		PFLU_RS27435	0.55	+0.1
6,102,531	-		PFLU_RS27435	0.55	+0.1
6,102,531	-		PFLU_RS27435	0.55	+0.3
6,102,567	+		PFLU_RS27435	0.60	-0.9
6,102,568	-		PFLU_RS27435	0.60	+0.7
6,102,642	+		PFLU_RS27435	0.69	-1.0
6,102,642	+		PFLU_RS27435	0.69	+0.8
6,102,642	+		PFLU_RS27435	0.69	-1.7
6,102,642	+		PFLU_RS27435	0.69	+0.0
6,102,642	+		PFLU_RS27435	0.69	+0.4
6,102,642	+		PFLU_RS27435	0.69	-0.9
6,102,642	+		PFLU_RS27435	0.69	-0.2
6,102,642	+		PFLU_RS27435	0.69	+0.2
6,102,642	+		PFLU_RS27435	0.69	+0.7
6,102,642	+		PFLU_RS27435	0.69	+2.2
6,102,643	-		PFLU_RS27435	0.70	-0.9
6,102,643	-		PFLU_RS27435	0.70	-1.7
6,102,643	-		PFLU_RS27435	0.70	+0.5
6,102,643	-		PFLU_RS27435	0.70	+1.2
6,102,643	-		PFLU_RS27435	0.70	-0.1
6,102,643	-		PFLU_RS27435	0.70	-0.4
6,102,643	-		PFLU_RS27435	0.70	+0.9
6,102,643	-		PFLU_RS27435	0.70	-0.5
6,102,643	-		PFLU_RS27435	0.70	-0.2
6,102,822	+				+0.3
6,102,822	+				-0.2
6,102,823	-				-0.3
6,102,879	+				-0.9
6,102,880	-				-0.9
6,102,880	-				-1.1
6,103,109	+		PFLU_RS27440	0.34	-2.5
6,103,109	+		PFLU_RS27440	0.34	-0.6
6,103,109	+		PFLU_RS27440	0.34	-2.2
6,103,109	+		PFLU_RS27440	0.34	-1.1
6,103,110	-		PFLU_RS27440	0.34	-3.6
6,103,110	-		PFLU_RS27440	0.34	-1.6
6,103,110	-		PFLU_RS27440	0.34	-2.4
6,103,110	-		PFLU_RS27440	0.34	-3.6
6,103,110	-		PFLU_RS27440	0.34	-2.3
6,103,110	-		PFLU_RS27440	0.34	-1.7
6,103,110	-		PFLU_RS27440	0.34	-3.4
6,103,125	+		PFLU_RS27440	0.37	-1.1
6,103,125	+		PFLU_RS27440	0.37	-1.3
6,103,125	+		PFLU_RS27440	0.37	-1.9
6,103,125	+		PFLU_RS27440	0.37	-2.2
6,103,126	-		PFLU_RS27440	0.37	+0.7
6,103,126	-		PFLU_RS27440	0.37	-2.7
6,103,126	-		PFLU_RS27440	0.37	-3.6
6,103,218	+		PFLU_RS27440	0.50	+0.1
6,103,218	+		PFLU_RS27440	0.50	-1.3
6,103,219	-		PFLU_RS27440	0.51	-0.6
6,103,327	-		PFLU_RS27440	0.67	+0.1
6,103,365	+		PFLU_RS27440	0.72	-3.2
6,103,365	+		PFLU_RS27440	0.72	-2.5
6,103,365	+		PFLU_RS27440	0.72	-3.2
6,103,365	+		PFLU_RS27440	0.72	-2.0
6,103,365	+		PFLU_RS27440	0.72	-0.9
6,103,365	+		PFLU_RS27440	0.72	-3.4
6,103,365	+		PFLU_RS27440	0.72	-2.5
6,103,365	+		PFLU_RS27440	0.72	-3.6
6,103,366	-		PFLU_RS27440	0.72	-1.3
6,103,366	-		PFLU_RS27440	0.72	-2.6
6,103,366	-		PFLU_RS27440	0.72	-2.3
6,103,366	-		PFLU_RS27440	0.72	-2.9
6,103,366	-		PFLU_RS27440	0.72	-1.7
6,103,446	+		PFLU_RS27440	0.84	-2.0
6,103,447	-		PFLU_RS27440	0.84	-2.5
6,103,552	+				-1.0
6,103,552	+				-1.3
6,103,552	+				-0.4
6,103,552	+				-1.6
6,103,552	+				-0.9
6,103,553	-				-0.6
6,103,553	-				+0.1
6,103,553	-				-1.5
6,103,553	-				-2.7
6,103,553	-				-1.6
6,103,553	-				-1.4
6,103,553	-				+1.2
6,103,636	+				-1.9
6,103,636	+				-1.1
6,103,636	+				-3.1
6,103,636	+				-1.5
6,103,636	+				+0.7
6,103,636	+				-1.1
6,103,636	+				-0.7
6,103,636	+				-1.8
6,103,636	+				-2.2
6,103,636	+				-2.6
6,103,636	+				-0.9
6,103,636	+				-3.7
6,103,636	+				-3.1
6,103,636	+				-1.8
6,103,636	+				+0.6
6,103,636	+				-2.2
6,103,636	+				-0.9
6,103,636	+				-1.3
6,103,636	+				-2.0
6,103,636	+				-1.7
6,103,636	+				-1.3
6,103,636	+				-0.6
6,103,636	+				-0.5
6,103,636	+				-3.0
6,103,636	+				-3.3
6,103,636	+				-1.3
6,103,637	-				-0.6
6,103,637	-				-3.0
6,103,637	-				-2.9
6,103,637	-				-2.7
6,103,637	-				-1.6
6,103,637	-				-0.9
6,103,637	-				-3.5
6,103,637	-				-3.0
6,103,637	-				-2.3
6,103,637	-				-1.6
6,103,637	-				-3.4
6,103,637	-				-2.5
6,103,637	-				-2.7
6,103,637	-				+0.1
6,103,637	-				-1.5
6,103,637	-				-2.4
6,103,637	-				-0.9
6,103,637	-				-3.1
6,103,637	-				+0.7
6,103,637	-				-1.7
6,103,637	-				-2.0
6,103,637	-				-2.5
6,103,637	-				-2.0
6,103,638	+				-1.7
6,103,638	+				-1.6
6,103,638	+				-1.4
6,103,638	+				-0.3
6,103,638	+				-3.3
6,103,638	+				-0.6
6,103,638	+				-3.0
6,103,638	+				-0.6
6,103,638	+				-1.9
6,103,638	+				+0.1
6,103,638	+				-0.6
6,103,638	+				-0.6
6,103,638	+				-3.1
6,103,638	+				-2.0
6,103,638	+				-2.4
6,103,638	+				-1.1
6,103,638	+				-0.5
6,103,638	+				-1.6
6,103,638	+				-2.4
6,103,639	-				-2.4
6,103,639	-				-0.5
6,103,639	-				-2.7
6,103,639	-				-2.1
6,103,639	-				-3.0
6,103,639	-				-1.4
6,103,639	-				-1.0
6,103,639	-				-1.3
6,103,639	-				-0.4
6,103,639	-				-0.9
6,103,639	-				-1.6
6,103,639	-				+0.3
6,103,639	-				-0.3
6,103,639	-				-2.4
6,103,639	-				-0.9
6,103,639	-				-1.9
6,103,639	-				-0.9
6,103,639	-				+0.7
6,103,639	-				-0.5
6,103,639	-				-1.2
6,103,639	-				-2.4
6,103,639	-				-3.7
6,103,639	-				-2.4
6,103,639	-				-2.8
6,103,640	+				-1.3
6,103,640	+				+0.4
6,103,640	+				-1.6
6,103,640	+				-2.4
6,103,640	+				+0.3
6,103,640	+				-2.7
6,103,640	+				-2.0
6,103,640	+				-3.0
6,103,640	+				-3.2
6,103,640	+				-3.3
6,103,640	+				+0.1
6,103,640	+				-3.0
6,103,640	+				-2.5
6,103,640	+				+0.1
6,103,640	+				-0.0
6,103,640	+				-0.9
6,103,640	+				-0.3
6,103,640	+				-2.6
6,103,640	+				+0.7
6,103,640	+				-1.5
6,103,640	+				-1.4
6,103,641	-				-3.1
6,103,641	-				-0.5
6,103,641	-				-2.2
6,103,641	-				-2.5
6,103,641	-				-3.3
6,103,641	-				-1.5
6,103,641	-				-1.5
6,103,641	-				-1.3
6,103,641	-				-0.6
6,103,641	-				-2.2
6,103,641	-				-2.3
6,103,641	-				-1.5
6,103,641	-				-1.3
6,103,641	-				-1.5
6,103,641	-				-0.4
6,103,641	-				-2.3
6,103,641	-				-1.5
6,103,641	-				-4.2
6,103,641	-				-2.9
6,103,641	-				-1.1
6,103,641	-				-2.3
6,103,641	-				+1.1
6,103,658	-		PFLU_RS27445	0.11	-3.3
6,103,670	+		PFLU_RS27445	0.12	-0.9
6,103,671	-		PFLU_RS27445	0.12	-2.3
6,103,671	-		PFLU_RS27445	0.12	-2.0
6,103,680	+		PFLU_RS27445	0.13	+0.5
6,103,681	-		PFLU_RS27445	0.13	-2.7
6,103,681	-		PFLU_RS27445	0.13	-1.5