Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11525

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
2,555,691	-				+0.4
2,555,691	-				-0.1
2,555,729	+		PFLU_RS11515	0.16	+1.7
2,555,730	-		PFLU_RS11515	0.17	-0.8
2,555,738	+		PFLU_RS11515	0.19	+0.7
2,555,739	-		PFLU_RS11515	0.20	+1.0
2,555,839	+		PFLU_RS11515	0.54	+0.1
2,555,840	-		PFLU_RS11515	0.54	-2.2
2,555,864	+		PFLU_RS11515	0.62	-3.2
2,555,864	+		PFLU_RS11515	0.62	-0.5
2,555,864	+		PFLU_RS11515	0.62	+0.4
2,555,864	+		PFLU_RS11515	0.62	-0.0
2,555,865	-		PFLU_RS11515	0.63	-1.5
2,555,865	-		PFLU_RS11515	0.63	+1.0
2,555,865	-		PFLU_RS11515	0.63	-1.8
2,555,865	-		PFLU_RS11515	0.63	+0.6
2,555,865	-		PFLU_RS11515	0.63	-1.9
2,555,900	+		PFLU_RS11515	0.74	+0.5
2,555,901	-		PFLU_RS11515	0.75	+1.0
2,555,901	-		PFLU_RS11515	0.75	-0.0
2,555,947	+				+1.0
2,555,948	-				-1.8
2,555,948	-				+0.4
2,555,972	+				-0.0
2,556,038	+				+0.3
2,556,038	+				-0.2
2,556,057	-				-1.2
2,556,057	-				-0.8
2,556,057	-				-0.2
2,556,157	+				-1.3
2,556,157	+				+0.2
2,556,157	+				+1.3
2,556,157	+				+0.8
2,556,157	+				-0.5
2,556,157	+				-0.8
2,556,157	+				-1.9
2,556,157	+				+0.1
2,556,157	+				+0.4
2,556,157	+				-2.2
2,556,157	+				+0.8
2,556,157	+				+0.2
2,556,157	+				+1.5
2,556,157	+				+0.8
2,556,157	+				+1.2
2,556,157	+				-0.2
2,556,157	+				-1.4
2,556,157	+				-0.1
2,556,158	-				+2.6
2,556,158	-				+1.1
2,556,158	-				-0.5
2,556,158	-				-0.7
2,556,158	-				+1.2
2,556,158	-				-0.7
2,556,158	-				+0.6
2,556,158	-				+0.6
2,556,158	-				-0.1
2,556,158	-				+1.1
2,556,158	-				+1.7
2,556,158	-				+0.4
2,556,158	-				+0.5
2,556,158	-				+1.8
2,556,158	-				+1.4
2,556,166	+				-1.2
2,556,166	+				-1.1
2,556,167	-				+0.8
2,556,167	-				-2.4
2,556,167	-				-1.4
2,556,192	-		PFLU_RS11520	0.14	+0.0
2,556,193	+		PFLU_RS11520	0.14	+1.2
2,556,193	+		PFLU_RS11520	0.14	-1.0
2,556,193	+		PFLU_RS11520	0.14	+3.6
2,556,224	-		PFLU_RS11520	0.20	-0.7
2,556,226	+		PFLU_RS11520	0.20	-0.0
2,556,226	+		PFLU_RS11520	0.20	-0.3
2,556,226	+		PFLU_RS11520	0.20	+0.8
2,556,226	+		PFLU_RS11520	0.20	-1.4
2,556,226	+		PFLU_RS11520	0.20	+2.4
2,556,226	+		PFLU_RS11520	0.20	-1.7
2,556,226	+		PFLU_RS11520	0.20	+0.6
2,556,226	+		PFLU_RS11520	0.20	+3.4
2,556,226	+		PFLU_RS11520	0.20	-0.0
2,556,226	+		PFLU_RS11520	0.20	+2.4
2,556,226	+		PFLU_RS11520	0.20	+0.3
2,556,227	-		PFLU_RS11520	0.20	+0.0
2,556,227	-		PFLU_RS11520	0.20	+0.8
2,556,227	-		PFLU_RS11520	0.20	+1.3
2,556,227	-		PFLU_RS11520	0.20	+0.4
2,556,227	-		PFLU_RS11520	0.20	+0.7
2,556,269	-		PFLU_RS11520	0.27	-0.4
2,556,331	+		PFLU_RS11520	0.38	+0.2
2,556,331	+		PFLU_RS11520	0.38	+0.3
2,556,331	+		PFLU_RS11520	0.38	-1.5
2,556,331	+		PFLU_RS11520	0.38	-0.3
2,556,331	+		PFLU_RS11520	0.38	+2.1
2,556,331	+		PFLU_RS11520	0.38	-0.7
2,556,332	-		PFLU_RS11520	0.39	-1.2
2,556,390	+		PFLU_RS11520	0.49	+0.3
2,556,390	+		PFLU_RS11520	0.49	-0.5
2,556,391	-		PFLU_RS11520	0.49	-0.5
2,556,391	-		PFLU_RS11520	0.49	+2.1
2,556,514	+		PFLU_RS11520	0.71	-2.4
2,556,515	-		PFLU_RS11520	0.71	-0.7
2,556,515	-		PFLU_RS11520	0.71	+0.8
2,556,565	+		PFLU_RS11520	0.80	+1.5
2,556,565	+		PFLU_RS11520	0.80	-0.2
2,556,565	+		PFLU_RS11520	0.80	-0.6
2,556,566	-		PFLU_RS11520	0.80	-0.7
2,556,566	-		PFLU_RS11520	0.80	-0.2
2,556,572	+		PFLU_RS11520	0.81	+1.0
2,556,573	-		PFLU_RS11520	0.81	-1.1
2,556,573	-		PFLU_RS11520	0.81	-1.5
2,556,574	+		PFLU_RS11520	0.82	-0.2
2,556,574	+		PFLU_RS11520	0.82	-0.2
2,556,575	-		PFLU_RS11520	0.82	-1.5
2,556,689	+				-0.2
2,556,689	+				-0.5
2,556,689	+				-1.5
2,556,689	+				-0.2
2,556,690	-				+0.7
2,556,690	-				-0.6
2,556,690	-				+0.5
2,556,690	-				+0.8
2,556,765	+		PFLU_RS11525	0.11	-3.5
2,556,921	+		PFLU_RS11525	0.32	-0.8
2,556,921	+		PFLU_RS11525	0.32	-3.0
2,556,922	-		PFLU_RS11525	0.32	-2.4
2,556,996	+		PFLU_RS11525	0.42	-1.8
2,556,996	+		PFLU_RS11525	0.42	-0.2
2,556,997	-		PFLU_RS11525	0.42	-2.4
2,556,997	-		PFLU_RS11525	0.42	-2.5
2,556,997	-		PFLU_RS11525	0.42	-3.7
2,557,155	+		PFLU_RS11525	0.63	-1.7
2,557,155	+		PFLU_RS11525	0.63	-3.3
2,557,155	+		PFLU_RS11525	0.63	-0.2
2,557,155	+		PFLU_RS11525	0.63	-2.4
2,557,156	-		PFLU_RS11525	0.63	-2.5
2,557,156	-		PFLU_RS11525	0.63	-2.4
2,557,156	-		PFLU_RS11525	0.63	-1.5
2,557,450	+				-2.4
2,557,515	-				-0.0
2,557,531	+				-2.8
2,557,617	+				+0.3
2,557,618	-				+1.0
2,557,618	-				+1.1
2,557,902	+		PFLU_RS11530	0.67	-0.9
2,557,902	+		PFLU_RS11530	0.67	+0.1
2,557,902	+		PFLU_RS11530	0.67	+0.6
2,557,902	+		PFLU_RS11530	0.67	-0.0
2,557,902	+		PFLU_RS11530	0.67	+0.1
2,557,902	+		PFLU_RS11530	0.67	+1.5
2,557,902	+		PFLU_RS11530	0.67	-0.2
2,557,903	-		PFLU_RS11530	0.67	+2.1
2,557,903	-		PFLU_RS11530	0.67	+0.0
2,557,903	-		PFLU_RS11530	0.67	-0.1
2,557,903	-		PFLU_RS11530	0.67	+1.0
2,557,903	-		PFLU_RS11530	0.67	+0.5
2,557,903	-		PFLU_RS11530	0.67	-1.0
2,557,903	-		PFLU_RS11530	0.67	+1.3
2,557,903	-		PFLU_RS11530	0.67	+0.9
2,557,903	-		PFLU_RS11530	0.67	+0.3
2,557,903	-		PFLU_RS11530	0.67	+1.5
2,558,043	+				-1.0
2,558,043	+				-0.9
2,558,043	+				+0.7
2,558,044	-				-0.2
2,558,044	-				+0.4
2,558,077	-				-0.2
2,558,134	+				-0.0
2,558,134	+				+1.8
2,558,135	-				-1.9
2,558,135	-				-3.2
2,558,135	-				-0.5
2,558,232	+		PFLU_RS11535	0.11	-1.2
2,558,233	-		PFLU_RS11535	0.11	-1.0