Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07690

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
1,709,221	-		PFLU_RS07685	0.32	-2.9
1,709,221	-		PFLU_RS07685	0.32	-1.4
1,709,221	-		PFLU_RS07685	0.32	-0.6
1,709,221	-		PFLU_RS07685	0.32	-0.2
1,709,221	-		PFLU_RS07685	0.32	-2.6
1,709,221	-		PFLU_RS07685	0.32	-0.4
1,709,294	+		PFLU_RS07685	0.44	+0.2
1,709,295	-		PFLU_RS07685	0.44	+0.4
1,709,295	-		PFLU_RS07685	0.44	-2.3
1,709,295	-		PFLU_RS07685	0.44	-1.4
1,709,295	-		PFLU_RS07685	0.44	-1.0
1,709,595	+				-1.6
1,709,595	+				+0.2
1,709,596	-				-0.4
1,709,596	-				-1.8
1,709,596	-				-1.9
1,709,596	-				-3.2
1,709,632	+				+1.2
1,709,633	-				-1.4
1,709,633	-				-1.5
1,709,633	-				-3.0
1,709,633	-				-2.0
1,709,633	-				+0.2
1,709,658	-				-1.8
1,709,659	+				-0.1
1,709,660	-				-1.2
1,709,660	-				-1.6
1,709,660	-				-1.7
1,709,674	+				-3.3
1,709,675	-				-1.8
1,709,676	+				-1.4
1,709,676	+				+0.1
1,709,676	+				-1.2
1,709,676	+				-2.8
1,709,746	+				-3.4
1,709,746	+				-2.2
1,709,746	+				+0.2
1,709,746	+				-1.6
1,709,746	+				-3.1
1,709,746	+				-2.4
1,709,746	+				-2.0
1,709,747	-				-1.3
1,709,747	-				+2.5
1,709,747	-				-1.9
1,709,747	-				+0.6
1,709,747	-				-1.0
1,709,747	-				-0.0
1,709,747	-				-1.6
1,709,747	-				-1.4
1,709,747	-				-3.2
1,709,747	-				-1.4
1,709,747	-				-0.2
1,709,747	-				-0.9
1,709,747	-				+1.2
1,709,747	-				+2.2
1,709,747	-				-2.3
1,709,747	-				-0.6
1,709,747	-				-2.7
1,709,769	+				-2.3
1,709,791	+				-2.0
1,709,791	+				-1.1
1,709,791	+				-0.4
1,709,791	+				-2.5
1,709,791	+				-1.8
1,709,791	+				-1.7
1,709,791	+				-0.8
1,709,791	+				-2.1
1,709,791	+				-0.5
1,709,791	+				-0.5
1,709,791	+				-1.1
1,709,791	+				-1.0
1,709,791	+				-2.9
1,709,792	-				+1.1
1,709,792	-				+0.2
1,709,792	-				+1.0
1,709,792	-				-0.1
1,709,792	-				+1.5
1,709,792	-				+0.6
1,709,792	-				+1.8
1,709,792	-				-2.3
1,709,792	-				+0.8
1,709,792	-				-1.6
1,709,792	-				-2.3
1,709,792	-				-2.7
1,709,792	-				+0.0
1,709,792	-				-1.2
1,709,792	-				+0.5
1,709,792	-				+1.9
1,709,792	-				+0.8
1,709,792	-				+0.5
1,709,792	-				-2.6
1,709,792	-				+1.0
1,709,795	+				-0.6
1,709,795	+				-0.8
1,709,795	+				-2.6
1,709,795	+				-1.1
1,709,796	-				-2.2
1,709,796	-				-1.4
1,709,806	+				-2.8
1,709,806	+				-0.1
1,709,806	+				-2.8
1,709,806	+				-2.2
1,709,806	+				-1.8
1,709,806	+				-0.2
1,709,806	+				-2.7
1,709,806	+				-1.6
1,709,806	+				-0.1
1,709,806	+				-1.8
1,709,807	-				+0.0
1,709,807	-				-1.2
1,709,807	-				+1.8
1,709,807	-				-0.1
1,709,807	-				+0.3
1,709,866	-				+1.3
1,709,897	-				-1.6
1,710,030	+		PFLU_RS07690	0.18	-0.8
1,710,031	-		PFLU_RS07690	0.18	-0.2
1,710,057	-		PFLU_RS07690	0.22	-1.6
1,710,282	+		PFLU_RS07690	0.54	+0.2
1,710,282	+		PFLU_RS07690	0.54	-2.5
1,710,297	+		PFLU_RS07690	0.56	-1.6
1,710,297	+		PFLU_RS07690	0.56	+0.2
1,710,297	+		PFLU_RS07690	0.56	+0.2
1,710,297	+		PFLU_RS07690	0.56	-1.7
1,710,297	+		PFLU_RS07690	0.56	-0.4
1,710,297	+		PFLU_RS07690	0.56	+0.8
1,710,297	+		PFLU_RS07690	0.56	-1.4
1,710,297	+		PFLU_RS07690	0.56	+0.8
1,710,297	+		PFLU_RS07690	0.56	+0.0
1,710,297	+		PFLU_RS07690	0.56	-1.2
1,710,297	+		PFLU_RS07690	0.56	-0.4
1,710,297	+		PFLU_RS07690	0.56	+0.8
1,710,298	-		PFLU_RS07690	0.56	-1.2
1,710,298	-		PFLU_RS07690	0.56	-0.8
1,710,298	-		PFLU_RS07690	0.56	+0.6
1,710,298	-		PFLU_RS07690	0.56	-1.4
1,710,298	-		PFLU_RS07690	0.56	+0.2
1,710,298	-		PFLU_RS07690	0.56	-1.4
1,710,298	-		PFLU_RS07690	0.56	-0.8
1,710,298	-		PFLU_RS07690	0.56	+0.2
1,710,298	-		PFLU_RS07690	0.56	-0.6
1,710,298	-		PFLU_RS07690	0.56	-0.8
1,710,298	-		PFLU_RS07690	0.56	+0.2
1,710,298	-		PFLU_RS07690	0.56	-1.2
1,710,298	-		PFLU_RS07690	0.56	-1.6
1,710,298	-		PFLU_RS07690	0.56	+0.4
1,710,298	-		PFLU_RS07690	0.56	-1.2
1,710,298	-		PFLU_RS07690	0.56	+0.9
1,710,298	-		PFLU_RS07690	0.56	-0.4
1,710,298	-		PFLU_RS07690	0.56	+3.2
1,710,298	-		PFLU_RS07690	0.56	+0.2
1,710,318	+		PFLU_RS07690	0.59	+0.8
1,710,318	+		PFLU_RS07690	0.59	+1.2
1,710,318	+		PFLU_RS07690	0.59	-0.4
1,710,318	+		PFLU_RS07690	0.59	-0.4
1,710,318	+		PFLU_RS07690	0.59	+0.4
1,710,318	+		PFLU_RS07690	0.59	-0.4
1,710,318	+		PFLU_RS07690	0.59	-0.4
1,710,319	-		PFLU_RS07690	0.59	+0.6
1,710,319	-		PFLU_RS07690	0.59	+0.4
1,710,319	-		PFLU_RS07690	0.59	+1.8
1,710,319	-		PFLU_RS07690	0.59	+1.8
1,710,351	-		PFLU_RS07690	0.64	+0.2
1,710,464	+		PFLU_RS07690	0.80	-0.8
1,710,464	+		PFLU_RS07690	0.80	-0.1
1,710,464	+		PFLU_RS07690	0.80	+1.2
1,710,464	+		PFLU_RS07690	0.80	+0.5
1,710,464	+		PFLU_RS07690	0.80	-1.8
1,710,464	+		PFLU_RS07690	0.80	+1.2
1,710,464	+		PFLU_RS07690	0.80	+1.7
1,710,464	+		PFLU_RS07690	0.80	+0.8
1,710,464	+		PFLU_RS07690	0.80	+0.2
1,710,464	+		PFLU_RS07690	0.80	+1.4
1,710,464	+		PFLU_RS07690	0.80	+1.0
1,710,464	+		PFLU_RS07690	0.80	-1.2
1,710,643	-				+2.0
1,710,643	-				+1.2
1,710,643	-				-1.5
1,710,647	+				-0.2
1,710,670	+				+0.8
1,710,670	+				-2.0
1,710,670	+				+0.6
1,710,670	+				-0.4
1,710,670	+				-0.4
1,710,670	+				-2.0
1,710,670	+				-0.4
1,710,670	+				-1.6
1,710,670	+				+0.8
1,710,671	-				-0.4
1,710,671	-				-2.7
1,710,671	-				-1.9
1,710,671	-				-1.8
1,710,671	-				-3.5
1,710,674	+				-0.5
1,710,674	+				-0.7
1,710,675	-				-2.9
1,710,675	-				+0.4
1,710,675	-				-0.8
1,710,731	+				+0.7
1,710,731	+				+2.2
1,710,731	+				-0.4
1,710,731	+				+0.4
1,710,731	+				-1.0
1,710,731	+				-0.5
1,710,732	-				-3.1
1,710,732	-				-2.3
1,710,732	-				-2.6
1,710,732	-				-1.4
1,710,732	-				-0.8
1,710,732	-				-0.4
1,710,732	-				-3.1
1,710,732	-				-3.6
1,710,733	+				+0.5
1,710,733	+				-0.7
1,710,733	+				-1.1
1,710,733	+				-2.7
1,710,734	-				-0.8
1,710,734	-				-2.5
1,710,734	-				-1.2
1,710,745	-				-0.4
1,710,745	-				-2.6
1,710,789	+				-3.2
1,710,790	-				-3.2
1,710,864	+		PFLU_RS07695	0.12	-1.4
1,710,865	-		PFLU_RS07695	0.12	-3.8
1,711,120	+		PFLU_RS07695	0.37	-2.2
1,711,120	+		PFLU_RS07695	0.37	-2.2
1,711,197	+		PFLU_RS07695	0.45	-2.6
1,711,390	+		PFLU_RS07695	0.64	-2.6
1,711,390	+		PFLU_RS07695	0.64	-1.5
1,711,390	+		PFLU_RS07695	0.64	-2.5
1,711,391	-		PFLU_RS07695	0.64	-1.8