Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04250

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04245 and MMP_RS04250 are separated by 325 nucleotidesMMP_RS04250 and MMP_RS04255 are separated by 152 nucleotides MMP_RS04245: MMP_RS04245 - right-handed parallel beta-helix repeat-containing protein, at 808,687 to 810,939 _RS04245 MMP_RS04250: MMP_RS04250 - PC4/YdbC family ssDNA-binding protein, at 811,265 to 811,486 _RS04250 MMP_RS04255: MMP_RS04255 - coenzyme F420 hydrogenase subunit beta, at 811,639 to 812,487 _RS04255 Position (kb) 811 812Strain fitness (log2 ratio) -1 0 1at 810.284 kb on - strand, within MMP_RS04245at 810.285 kb on + strand, within MMP_RS04245at 810.286 kb on - strand, within MMP_RS04245at 810.286 kb on - strand, within MMP_RS04245at 810.286 kb on - strand, within MMP_RS04245at 810.286 kb on - strand, within MMP_RS04245at 810.286 kb on - strand, within MMP_RS04245at 810.302 kb on - strand, within MMP_RS04245at 810.303 kb on + strand, within MMP_RS04245at 810.359 kb on - strand, within MMP_RS04245at 810.411 kb on - strand, within MMP_RS04245at 810.421 kb on - strand, within MMP_RS04245at 810.424 kb on + strand, within MMP_RS04245at 810.515 kb on + strand, within MMP_RS04245at 810.529 kb on - strand, within MMP_RS04245at 810.529 kb on - strand, within MMP_RS04245at 810.538 kb on - strand, within MMP_RS04245at 810.580 kb on - strand, within MMP_RS04245at 810.580 kb on - strand, within MMP_RS04245at 810.619 kb on - strand, within MMP_RS04245at 810.619 kb on - strand, within MMP_RS04245at 810.620 kb on + strand, within MMP_RS04245at 810.620 kb on + strand, within MMP_RS04245at 810.620 kb on + strand, within MMP_RS04245at 810.620 kb on + strand, within MMP_RS04245at 810.620 kb on + strand, within MMP_RS04245at 810.620 kb on + strand, within MMP_RS04245at 810.620 kb on + strand, within MMP_RS04245at 810.624 kb on + strand, within MMP_RS04245at 810.624 kb on + strand, within MMP_RS04245at 810.639 kb on - strand, within MMP_RS04245at 810.857 kb on - strandat 810.874 kb on - strandat 810.875 kb on + strandat 810.898 kb on + strandat 810.903 kb on - strandat 810.903 kb on - strandat 810.904 kb on + strandat 810.916 kb on + strandat 810.917 kb on - strandat 810.931 kb on - strandat 810.931 kb on - strandat 810.973 kb on - strandat 811.009 kb on - strandat 811.010 kb on + strandat 811.010 kb on + strandat 811.034 kb on - strandat 811.034 kb on - strandat 811.035 kb on + strandat 811.036 kb on - strandat 811.036 kb on - strandat 811.036 kb on - strandat 811.037 kb on + strandat 811.053 kb on + strandat 811.064 kb on - strandat 811.068 kb on - strandat 811.069 kb on + strandat 811.185 kb on - strandat 811.186 kb on + strandat 811.189 kb on - strandat 811.213 kb on + strandat 811.244 kb on + strandat 811.324 kb on - strand, within MMP_RS04250at 811.368 kb on + strand, within MMP_RS04250at 811.368 kb on + strand, within MMP_RS04250at 811.400 kb on - strand, within MMP_RS04250at 811.401 kb on + strand, within MMP_RS04250at 811.441 kb on + strand, within MMP_RS04250at 811.445 kb on - strand, within MMP_RS04250at 811.453 kb on - strand, within MMP_RS04250at 811.464 kb on + strandat 811.514 kb on + strandat 811.525 kb on + strandat 811.552 kb on - strandat 811.553 kb on + strandat 811.560 kb on - strandat 811.601 kb on - strandat 811.607 kb on - strandat 811.607 kb on - strandat 811.726 kb on - strand, within MMP_RS04255at 811.872 kb on - strand, within MMP_RS04255at 811.925 kb on - strand, within MMP_RS04255at 811.925 kb on - strand, within MMP_RS04255at 811.926 kb on + strand, within MMP_RS04255at 811.935 kb on - strand, within MMP_RS04255at 812.048 kb on + strand, within MMP_RS04255at 812.101 kb on + strand, within MMP_RS04255at 812.124 kb on - strand, within MMP_RS04255at 812.213 kb on - strand, within MMP_RS04255at 812.242 kb on - strand, within MMP_RS04255at 812.374 kb on - strand, within MMP_RS04255at 812.457 kb on - strandat 812.457 kb on - strandat 812.458 kb on + strandat 812.466 kb on - strandat 812.468 kb on - strandat 812.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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810,284 - MMP_RS04245 0.71 -0.3
810,285 + MMP_RS04245 0.71 +0.1
810,286 - MMP_RS04245 0.71 +0.2
810,286 - MMP_RS04245 0.71 -0.4
810,286 - MMP_RS04245 0.71 +0.4
810,286 - MMP_RS04245 0.71 -0.4
810,286 - MMP_RS04245 0.71 -0.6
810,302 - MMP_RS04245 0.72 -0.2
810,303 + MMP_RS04245 0.72 +0.1
810,359 - MMP_RS04245 0.74 +0.1
810,411 - MMP_RS04245 0.77 -0.4
810,421 - MMP_RS04245 0.77 -0.1
810,424 + MMP_RS04245 0.77 +1.5
810,515 + MMP_RS04245 0.81 +0.5
810,529 - MMP_RS04245 0.82 +0.4
810,529 - MMP_RS04245 0.82 +0.3
810,538 - MMP_RS04245 0.82 -0.7
810,580 - MMP_RS04245 0.84 -0.3
810,580 - MMP_RS04245 0.84 -0.2
810,619 - MMP_RS04245 0.86 +0.1
810,619 - MMP_RS04245 0.86 -1.0
810,620 + MMP_RS04245 0.86 +0.1
810,620 + MMP_RS04245 0.86 +0.0
810,620 + MMP_RS04245 0.86 -0.0
810,620 + MMP_RS04245 0.86 -0.4
810,620 + MMP_RS04245 0.86 +0.3
810,620 + MMP_RS04245 0.86 +0.0
810,620 + MMP_RS04245 0.86 -0.0
810,624 + MMP_RS04245 0.86 +0.8
810,624 + MMP_RS04245 0.86 -0.2
810,639 - MMP_RS04245 0.87 +0.4
810,857 - -0.1
810,874 - +0.1
810,875 + -0.1
810,898 + -0.1
810,903 - -0.5
810,903 - -0.4
810,904 + -0.0
810,916 + +0.2
810,917 - +0.0
810,931 - +0.1
810,931 - +0.0
810,973 - -0.1
811,009 - -0.7
811,010 + -0.0
811,010 + +0.2
811,034 - -0.3
811,034 - -0.7
811,035 + +0.1
811,036 - +0.9
811,036 - +0.1
811,036 - -0.3
811,037 + +0.1
811,053 + -0.3
811,064 - +0.1
811,068 - -0.1
811,069 + -0.6
811,185 - +0.1
811,186 + +0.4
811,189 - +0.3
811,213 + +0.2
811,244 + +0.3
811,324 - MMP_RS04250 0.27 +0.0
811,368 + MMP_RS04250 0.46 +0.3
811,368 + MMP_RS04250 0.46 +0.5
811,400 - MMP_RS04250 0.61 +0.3
811,401 + MMP_RS04250 0.61 -0.3
811,441 + MMP_RS04250 0.79 -0.1
811,445 - MMP_RS04250 0.81 -0.4
811,453 - MMP_RS04250 0.85 +0.1
811,464 + -0.1
811,514 + +0.4
811,525 + -0.1
811,552 - -0.3
811,553 + -0.3
811,560 - +0.3
811,601 - -0.2
811,607 - +0.0
811,607 - +0.2
811,726 - MMP_RS04255 0.10 -0.3
811,872 - MMP_RS04255 0.27 -0.5
811,925 - MMP_RS04255 0.34 -0.8
811,925 - MMP_RS04255 0.34 -0.2
811,926 + MMP_RS04255 0.34 +0.2
811,935 - MMP_RS04255 0.35 -0.4
812,048 + MMP_RS04255 0.48 +0.1
812,101 + MMP_RS04255 0.54 +0.3
812,124 - MMP_RS04255 0.57 +0.2
812,213 - MMP_RS04255 0.68 +0.0
812,242 - MMP_RS04255 0.71 -0.3
812,374 - MMP_RS04255 0.87 -0.3
812,457 - +0.4
812,457 - -0.1
812,458 + -0.3
812,466 - +0.3
812,468 - -0.0
812,468 - +0.2

Or see this region's nucleotide sequence