Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01250 and MMP_RS01255 are separated by 33 nucleotides MMP_RS01255 and MMP_RS01260 are separated by 40 nucleotides MMP_RS01260 and MMP_RS01265 are separated by 81 nucleotides
MMP_RS01250: MMP_RS01250 - tRNA (guanine(26)-N(2))-dimethyltransferase, at 236,852 to 237,973
_RS01250
MMP_RS01255: MMP_RS01255 - amino acid ABC transporter ATP-binding protein, at 238,007 to 238,738
_RS01255
MMP_RS01260: MMP_RS01260 - HDIG domain-containing protein, at 238,779 to 239,465
_RS01260
MMP_RS01265: MMP_RS01265 - hypothetical protein, at 239,547 to 239,915
_RS01265
Position (kb) 238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 237.222 kb on - strand, within MMP_RS01250 at 237.343 kb on + strand, within MMP_RS01250 at 237.572 kb on - strand, within MMP_RS01250 at 237.605 kb on + strand, within MMP_RS01250 at 237.872 kb on + strand at 237.877 kb on - strand at 237.983 kb on + strand at 237.989 kb on - strand at 237.993 kb on - strand at 237.994 kb on + strand at 237.994 kb on + strand at 238.009 kb on + strand at 238.066 kb on - strand at 238.067 kb on + strand at 238.205 kb on - strand, within MMP_RS01255 at 238.215 kb on + strand, within MMP_RS01255 at 238.262 kb on - strand, within MMP_RS01255 at 238.450 kb on - strand, within MMP_RS01255 at 238.646 kb on - strand, within MMP_RS01255 at 239.228 kb on + strand, within MMP_RS01260 at 239.394 kb on - strand, within MMP_RS01260 at 239.394 kb on - strand, within MMP_RS01260 at 239.394 kb on - strand, within MMP_RS01260 at 239.397 kb on + strand at 239.454 kb on - strand at 239.454 kb on - strand at 239.482 kb on - strand at 239.482 kb on - strand at 239.483 kb on + strand at 239.485 kb on + strand at 239.486 kb on - strand at 239.499 kb on + strand at 239.512 kb on + strand at 239.544 kb on - strand at 239.544 kb on - strand at 239.546 kb on - strand at 239.546 kb on - strand at 239.546 kb on - strand at 239.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 237,222 - MMP_RS01250 0.33 -1.4 237,343 + MMP_RS01250 0.44 -1.4 237,572 - MMP_RS01250 0.64 -1.3 237,605 + MMP_RS01250 0.67 -1.4 237,872 + -0.9 237,877 - -1.3 237,983 + +0.1 237,989 - -0.1 237,993 - -0.6 237,994 + +0.1 237,994 + +0.1 238,009 + +0.0 238,066 - +0.2 238,067 + +0.3 238,205 - MMP_RS01255 0.27 -0.2 238,215 + MMP_RS01255 0.28 +0.1 238,262 - MMP_RS01255 0.35 -0.6 238,450 - MMP_RS01255 0.61 -0.2 238,646 - MMP_RS01255 0.87 +0.2 239,228 + MMP_RS01260 0.65 +0.2 239,394 - MMP_RS01260 0.90 +0.1 239,394 - MMP_RS01260 0.90 +0.5 239,394 - MMP_RS01260 0.90 -0.8 239,397 + -0.3 239,454 - +0.1 239,454 - +0.1 239,482 - +0.2 239,482 - +0.1 239,483 + +0.6 239,485 + +0.2 239,486 - -0.3 239,499 + +0.1 239,512 + +0.2 239,544 - -1.6 239,544 - -3.0 239,546 - -2.0 239,546 - -1.7 239,546 - -1.8 239,547 + -1.5
Or see this region's nucleotide sequence