Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01205 and MMP_RS01210 are separated by 182 nucleotides MMP_RS01210 and MMP_RS01215 are separated by 197 nucleotides
MMP_RS01205: MMP_RS01205 - manganese-dependent inorganic pyrophosphatase, at 226,294 to 227,217
_RS01205
MMP_RS01210: MMP_RS01210 - sodium:solute symporter, at 227,400 to 228,833
_RS01210
MMP_RS01215: MMP_RS01215 - sodium/proline symporter PutP, at 229,031 to 230,509
_RS01215
Position (kb) 227
228
229 Strain fitness (log2 ratio) -1
0
1 at 227.039 kb on - strand at 227.151 kb on - strand at 227.184 kb on + strand at 227.279 kb on + strand at 227.281 kb on + strand at 227.308 kb on + strand at 227.310 kb on + strand at 227.326 kb on - strand at 227.326 kb on - strand at 227.363 kb on - strand at 227.363 kb on - strand at 227.364 kb on + strand at 227.373 kb on - strand at 227.373 kb on - strand at 227.374 kb on + strand at 227.407 kb on - strand at 227.408 kb on + strand at 227.588 kb on + strand, within MMP_RS01210 at 227.636 kb on + strand, within MMP_RS01210 at 227.636 kb on + strand, within MMP_RS01210 at 227.792 kb on + strand, within MMP_RS01210 at 228.056 kb on - strand, within MMP_RS01210 at 228.197 kb on - strand, within MMP_RS01210 at 228.214 kb on + strand, within MMP_RS01210 at 228.215 kb on - strand, within MMP_RS01210 at 228.215 kb on - strand, within MMP_RS01210 at 228.287 kb on - strand, within MMP_RS01210 at 228.292 kb on - strand, within MMP_RS01210 at 228.292 kb on - strand, within MMP_RS01210 at 228.419 kb on + strand, within MMP_RS01210 at 228.694 kb on + strand at 228.813 kb on - strand at 228.818 kb on + strand at 228.908 kb on + strand at 228.947 kb on + strand at 228.950 kb on - strand at 228.950 kb on - strand at 228.950 kb on - strand at 228.951 kb on + strand at 229.030 kb on - strand at 229.036 kb on + strand at 229.099 kb on - strand at 229.238 kb on - strand, within MMP_RS01215 at 229.293 kb on + strand, within MMP_RS01215 at 229.542 kb on - strand, within MMP_RS01215 at 229.555 kb on - strand, within MMP_RS01215 at 229.598 kb on + strand, within MMP_RS01215 at 229.675 kb on - strand, within MMP_RS01215 at 229.714 kb on + strand, within MMP_RS01215 at 229.731 kb on - strand, within MMP_RS01215 at 229.731 kb on - strand, within MMP_RS01215 at 229.732 kb on + strand, within MMP_RS01215 at 229.732 kb on + strand, within MMP_RS01215 at 229.732 kb on + strand, within MMP_RS01215 at 229.750 kb on - strand, within MMP_RS01215 at 229.751 kb on + strand, within MMP_RS01215 at 229.790 kb on - strand, within MMP_RS01215
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 227,039 - -1.2 227,151 - -0.5 227,184 + -0.1 227,279 + +0.1 227,281 + -0.0 227,308 + +0.4 227,310 + +0.9 227,326 - -0.1 227,326 - +0.4 227,363 - +0.0 227,363 - -0.3 227,364 + +0.2 227,373 - -0.1 227,373 - +0.1 227,374 + -0.3 227,407 - -0.4 227,408 + -0.2 227,588 + MMP_RS01210 0.13 +0.1 227,636 + MMP_RS01210 0.16 -0.4 227,636 + MMP_RS01210 0.16 -0.2 227,792 + MMP_RS01210 0.27 +0.2 228,056 - MMP_RS01210 0.46 +0.0 228,197 - MMP_RS01210 0.56 -0.4 228,214 + MMP_RS01210 0.57 +0.2 228,215 - MMP_RS01210 0.57 -0.1 228,215 - MMP_RS01210 0.57 +0.3 228,287 - MMP_RS01210 0.62 +0.7 228,292 - MMP_RS01210 0.62 +0.2 228,292 - MMP_RS01210 0.62 -0.2 228,419 + MMP_RS01210 0.71 +0.3 228,694 + -0.2 228,813 - +0.0 228,818 + +0.0 228,908 + -0.1 228,947 + +0.0 228,950 - -0.1 228,950 - +0.1 228,950 - +0.5 228,951 + -0.1 229,030 - +0.2 229,036 + +0.2 229,099 - +0.1 229,238 - MMP_RS01215 0.14 -0.1 229,293 + MMP_RS01215 0.18 -0.0 229,542 - MMP_RS01215 0.35 -0.0 229,555 - MMP_RS01215 0.35 +0.0 229,598 + MMP_RS01215 0.38 -0.1 229,675 - MMP_RS01215 0.44 -0.1 229,714 + MMP_RS01215 0.46 +1.1 229,731 - MMP_RS01215 0.47 -0.1 229,731 - MMP_RS01215 0.47 -0.6 229,732 + MMP_RS01215 0.47 -0.2 229,732 + MMP_RS01215 0.47 -0.5 229,732 + MMP_RS01215 0.47 +0.2 229,750 - MMP_RS01215 0.49 -0.6 229,751 + MMP_RS01215 0.49 -0.1 229,790 - MMP_RS01215 0.51 +0.2
Or see this region's nucleotide sequence