Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01150 and MMP_RS01155 are separated by 15 nucleotides MMP_RS01155 and MMP_RS01160 are separated by 137 nucleotides MMP_RS01160 and MMP_RS01165 are separated by 95 nucleotides MMP_RS01165 and MMP_RS01170 are separated by 1 nucleotides
MMP_RS01150: MMP_RS01150 - aldo/keto reductase, at 215,314 to 216,543
_RS01150
MMP_RS01155: MMP_RS01155 - XRE family transcriptional regulator, at 216,559 to 217,113
_RS01155
MMP_RS01160: MMP_RS01160 - DMT family transporter, at 217,251 to 218,150
_RS01160
MMP_RS01165: MMP_RS01165 - DUF434 domain-containing protein, at 218,246 to 218,914
_RS01165
MMP_RS01170: MMP_RS01170 - glycine--tRNA ligase, at 218,916 to 220,640
_RS01170
Position (kb) 217
218
219 Strain fitness (log2 ratio) -1
0
1 at 216.331 kb on + strand, within MMP_RS01150 at 216.486 kb on + strand at 216.510 kb on - strand at 216.572 kb on - strand at 216.572 kb on - strand at 216.572 kb on - strand at 216.575 kb on + strand at 216.640 kb on + strand, within MMP_RS01155 at 216.739 kb on + strand, within MMP_RS01155 at 216.790 kb on - strand, within MMP_RS01155 at 216.824 kb on + strand, within MMP_RS01155 at 216.857 kb on - strand, within MMP_RS01155 at 216.924 kb on - strand, within MMP_RS01155 at 216.955 kb on - strand, within MMP_RS01155 at 217.120 kb on - strand at 217.136 kb on - strand at 217.140 kb on + strand at 217.163 kb on + strand at 217.171 kb on - strand at 217.180 kb on - strand at 217.180 kb on - strand at 217.181 kb on + strand at 217.230 kb on + strand at 217.232 kb on - strand at 217.233 kb on + strand at 217.238 kb on + strand at 217.379 kb on + strand, within MMP_RS01160 at 217.391 kb on + strand, within MMP_RS01160 at 217.408 kb on - strand, within MMP_RS01160 at 217.464 kb on - strand, within MMP_RS01160 at 217.464 kb on - strand, within MMP_RS01160 at 217.504 kb on + strand, within MMP_RS01160 at 217.860 kb on - strand, within MMP_RS01160 at 217.860 kb on - strand, within MMP_RS01160 at 217.860 kb on - strand, within MMP_RS01160 at 217.861 kb on + strand, within MMP_RS01160 at 217.929 kb on - strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 218.121 kb on - strand at 218.122 kb on + strand at 218.456 kb on + strand, within MMP_RS01165 at 218.734 kb on - strand, within MMP_RS01165 at 218.764 kb on - strand, within MMP_RS01165 at 218.806 kb on - strand, within MMP_RS01165 at 218.806 kb on - strand, within MMP_RS01165 at 218.830 kb on - strand, within MMP_RS01165 at 218.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 216,331 + MMP_RS01150 0.83 +0.0 216,486 + +0.3 216,510 - +0.3 216,572 - +0.5 216,572 - -0.3 216,572 - +0.2 216,575 + -0.2 216,640 + MMP_RS01155 0.15 -0.0 216,739 + MMP_RS01155 0.32 -0.2 216,790 - MMP_RS01155 0.42 -0.1 216,824 + MMP_RS01155 0.48 -0.0 216,857 - MMP_RS01155 0.54 +0.2 216,924 - MMP_RS01155 0.66 +0.4 216,955 - MMP_RS01155 0.71 +0.0 217,120 - +0.3 217,136 - -0.1 217,140 + +0.1 217,163 + -0.3 217,171 - +0.0 217,180 - -0.3 217,180 - +0.1 217,181 + -0.0 217,230 + +0.9 217,232 - +0.2 217,233 + +0.2 217,238 + +0.0 217,379 + MMP_RS01160 0.14 +0.7 217,391 + MMP_RS01160 0.16 -0.5 217,408 - MMP_RS01160 0.17 -0.1 217,464 - MMP_RS01160 0.24 +0.7 217,464 - MMP_RS01160 0.24 +0.1 217,504 + MMP_RS01160 0.28 +0.1 217,860 - MMP_RS01160 0.68 -0.2 217,860 - MMP_RS01160 0.68 +0.3 217,860 - MMP_RS01160 0.68 +0.5 217,861 + MMP_RS01160 0.68 +0.6 217,929 - MMP_RS01160 0.75 +0.2 217,930 + MMP_RS01160 0.75 +0.0 217,930 + MMP_RS01160 0.75 +0.3 217,930 + MMP_RS01160 0.75 +0.3 217,930 + MMP_RS01160 0.75 -0.1 218,121 - +0.6 218,122 + -0.1 218,456 + MMP_RS01165 0.31 +0.3 218,734 - MMP_RS01165 0.73 +0.1 218,764 - MMP_RS01165 0.77 +0.2 218,806 - MMP_RS01165 0.84 +1.1 218,806 - MMP_RS01165 0.84 -0.0 218,830 - MMP_RS01165 0.87 +0.1 218,858 + -0.1
Or see this region's nucleotide sequence