Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00425 and MMP_RS00430 are separated by 69 nucleotides MMP_RS00430 and MMP_RS00435 overlap by 12 nucleotides MMP_RS00435 and MMP_RS00440 are separated by 228 nucleotides MMP_RS00440 and MMP_RS00445 are separated by 143 nucleotides
MMP_RS00425: MMP_RS00425 - argininosuccinate synthase, at 84,962 to 86,155
_RS00425
MMP_RS00430: MMP_RS00430 - hypothetical protein, at 86,225 to 86,581
_RS00430
MMP_RS00435: MMP_RS00435 - CPBP family intramembrane metalloprotease, at 86,570 to 87,379
_RS00435
MMP_RS00440: MMP_RS00440 - TRAM domain-containing protein, at 87,608 to 87,817
_RS00440
MMP_RS00445: MMP_RS00445 - 7-carboxy-7-deazaguanine synthase QueE, at 87,961 to 88,689
_RS00445
Position (kb) 86
87
88 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 86.476 kb on - strand, within MMP_RS00430 at 86.476 kb on - strand, within MMP_RS00430 at 86.478 kb on - strand, within MMP_RS00430 at 86.610 kb on + strand at 86.673 kb on + strand, within MMP_RS00435 at 86.679 kb on + strand, within MMP_RS00435 at 86.684 kb on - strand, within MMP_RS00435 at 86.734 kb on - strand, within MMP_RS00435 at 86.737 kb on + strand, within MMP_RS00435 at 86.789 kb on - strand, within MMP_RS00435 at 86.790 kb on + strand, within MMP_RS00435 at 86.851 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.856 kb on + strand, within MMP_RS00435 at 86.902 kb on - strand, within MMP_RS00435 at 86.902 kb on - strand, within MMP_RS00435 at 86.940 kb on - strand, within MMP_RS00435 at 86.968 kb on - strand, within MMP_RS00435 at 86.987 kb on - strand, within MMP_RS00435 at 87.110 kb on - strand, within MMP_RS00435 at 87.113 kb on + strand, within MMP_RS00435 at 87.134 kb on - strand, within MMP_RS00435 at 87.218 kb on + strand, within MMP_RS00435 at 87.363 kb on - strand at 87.368 kb on - strand at 87.488 kb on - strand at 87.491 kb on + strand at 87.612 kb on + strand at 87.821 kb on - strand at 87.829 kb on - strand at 87.832 kb on - strand at 87.832 kb on - strand at 87.833 kb on + strand at 87.835 kb on - strand at 87.836 kb on + strand at 87.836 kb on + strand at 87.837 kb on - strand at 87.838 kb on + strand at 87.838 kb on + strand at 87.839 kb on - strand at 87.839 kb on - strand at 87.839 kb on - strand at 87.839 kb on - strand at 87.840 kb on + strand at 87.840 kb on + strand at 87.840 kb on + strand at 87.840 kb on + strand at 87.840 kb on + strand at 87.847 kb on - strand at 87.856 kb on - strand at 87.856 kb on - strand at 87.856 kb on - strand at 87.856 kb on - strand at 87.857 kb on + strand at 87.857 kb on + strand at 87.861 kb on - strand at 87.878 kb on - strand at 87.882 kb on - strand at 87.882 kb on - strand at 87.884 kb on - strand at 87.884 kb on - strand at 87.884 kb on - strand at 87.884 kb on - strand at 87.884 kb on - strand at 87.885 kb on + strand at 88.056 kb on - strand, within MMP_RS00445 at 88.057 kb on + strand, within MMP_RS00445 at 88.057 kb on + strand, within MMP_RS00445 at 88.057 kb on + strand, within MMP_RS00445 at 88.058 kb on - strand, within MMP_RS00445 at 88.058 kb on - strand, within MMP_RS00445 at 88.059 kb on + strand, within MMP_RS00445 at 88.059 kb on + strand, within MMP_RS00445 at 88.061 kb on + strand, within MMP_RS00445 at 88.061 kb on + strand, within MMP_RS00445 at 88.061 kb on + strand, within MMP_RS00445 at 88.135 kb on - strand, within MMP_RS00445 at 88.136 kb on + strand, within MMP_RS00445 at 88.231 kb on - strand, within MMP_RS00445 at 88.281 kb on - strand, within MMP_RS00445 at 88.347 kb on + strand, within MMP_RS00445
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 86,476 - MMP_RS00430 0.70 -0.1 86,476 - MMP_RS00430 0.70 +0.1 86,478 - MMP_RS00430 0.71 -0.4 86,610 + +0.1 86,673 + MMP_RS00435 0.13 +0.5 86,679 + MMP_RS00435 0.13 -0.1 86,684 - MMP_RS00435 0.14 -0.1 86,734 - MMP_RS00435 0.20 +0.9 86,737 + MMP_RS00435 0.21 -0.1 86,789 - MMP_RS00435 0.27 +0.0 86,790 + MMP_RS00435 0.27 +0.5 86,851 - MMP_RS00435 0.35 -0.2 86,855 - MMP_RS00435 0.35 -0.1 86,855 - MMP_RS00435 0.35 +0.2 86,855 - MMP_RS00435 0.35 -0.5 86,855 - MMP_RS00435 0.35 +0.3 86,856 + MMP_RS00435 0.35 +0.2 86,902 - MMP_RS00435 0.41 +0.3 86,902 - MMP_RS00435 0.41 -0.4 86,940 - MMP_RS00435 0.46 -0.2 86,968 - MMP_RS00435 0.49 +0.3 86,987 - MMP_RS00435 0.51 +0.0 87,110 - MMP_RS00435 0.67 +0.3 87,113 + MMP_RS00435 0.67 +0.6 87,134 - MMP_RS00435 0.70 +0.5 87,218 + MMP_RS00435 0.80 -0.2 87,363 - +0.4 87,368 - +0.1 87,488 - +0.0 87,491 + -0.2 87,612 + -1.5 87,821 - -1.7 87,829 - -2.3 87,832 - -1.8 87,832 - -1.4 87,833 + -2.5 87,835 - -0.2 87,836 + -0.8 87,836 + +0.6 87,837 - -1.4 87,838 + -1.2 87,838 + -0.7 87,839 - -2.0 87,839 - -1.4 87,839 - -3.0 87,839 - -1.9 87,840 + -0.3 87,840 + -0.5 87,840 + -1.1 87,840 + -0.7 87,840 + -1.5 87,847 - -1.6 87,856 - -0.9 87,856 - -1.3 87,856 - -1.4 87,856 - -1.5 87,857 + -1.6 87,857 + -0.6 87,861 - -0.6 87,878 - -0.2 87,882 - -1.1 87,882 - -1.4 87,884 - -0.5 87,884 - -0.8 87,884 - -0.7 87,884 - -0.6 87,884 - +0.0 87,885 + -0.6 88,056 - MMP_RS00445 0.13 -0.1 88,057 + MMP_RS00445 0.13 -0.1 88,057 + MMP_RS00445 0.13 +0.6 88,057 + MMP_RS00445 0.13 -0.2 88,058 - MMP_RS00445 0.13 +0.2 88,058 - MMP_RS00445 0.13 +1.0 88,059 + MMP_RS00445 0.13 +0.2 88,059 + MMP_RS00445 0.13 -0.1 88,061 + MMP_RS00445 0.14 +0.4 88,061 + MMP_RS00445 0.14 +0.1 88,061 + MMP_RS00445 0.14 -0.0 88,135 - MMP_RS00445 0.24 -0.1 88,136 + MMP_RS00445 0.24 -0.0 88,231 - MMP_RS00445 0.37 -0.2 88,281 - MMP_RS00445 0.44 +0.1 88,347 + MMP_RS00445 0.53 -0.3
Or see this region's nucleotide sequence