Strain Fitness in Pantoea sp. MT58 around IAI47_16755

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,545,219	+		IAI47_16750	0.30	+1.0
3,545,219	+		IAI47_16750	0.30	+0.8
3,545,219	+		IAI47_16750	0.30	+0.2
3,545,219	+		IAI47_16750	0.30	-3.6
3,545,219	+		IAI47_16750	0.30	+2.4
3,545,219	+		IAI47_16750	0.30	-0.4
3,545,220	-		IAI47_16750	0.30	+1.3
3,545,220	-		IAI47_16750	0.30	-0.2
3,545,220	-		IAI47_16750	0.30	-0.2
3,545,242	-		IAI47_16750	0.33	-2.9
3,545,248	-		IAI47_16750	0.33	+2.5
3,545,278	-		IAI47_16750	0.37	-2.1
3,545,278	-		IAI47_16750	0.37	+1.3
3,545,371	+		IAI47_16750	0.46	-3.5
3,545,371	+		IAI47_16750	0.46	-2.7
3,545,372	-		IAI47_16750	0.46	-1.1
3,545,372	-		IAI47_16750	0.46	-2.5
3,545,421	+		IAI47_16750	0.52	+1.2
3,545,421	+		IAI47_16750	0.52	+0.9
3,545,421	+		IAI47_16750	0.52	+2.9
3,545,422	-		IAI47_16750	0.52	+0.7
3,545,422	-		IAI47_16750	0.52	+1.0
3,545,435	+		IAI47_16750	0.53	+0.6
3,545,436	-		IAI47_16750	0.53	+2.6
3,545,448	-		IAI47_16750	0.54	-0.2
3,545,452	-		IAI47_16750	0.55	-2.9
3,545,515	+		IAI47_16750	0.62	-1.5
3,545,515	+		IAI47_16750	0.62	-2.1
3,545,516	-		IAI47_16750	0.62	-0.3
3,545,547	+		IAI47_16750	0.65	+0.4
3,545,548	-		IAI47_16750	0.65	-1.4
3,545,548	-		IAI47_16750	0.65	+2.4
3,545,567	-		IAI47_16750	0.67	-0.7
3,545,567	-		IAI47_16750	0.67	+0.0
3,545,567	-		IAI47_16750	0.67	+0.1
3,545,567	-		IAI47_16750	0.67	-1.7
3,545,567	-		IAI47_16750	0.67	-1.9
3,545,567	-		IAI47_16750	0.67	+0.5
3,545,567	-		IAI47_16750	0.67	+0.6
3,545,567	-		IAI47_16750	0.67	-0.3
3,545,577	+		IAI47_16750	0.68	+0.2
3,545,578	-		IAI47_16750	0.68	+3.2
3,545,578	-		IAI47_16750	0.68	+1.6
3,545,578	-		IAI47_16750	0.68	+1.5
3,545,607	+		IAI47_16750	0.71	+0.7
3,545,608	-		IAI47_16750	0.71	+0.9
3,545,608	-		IAI47_16750	0.71	-0.4
3,545,608	-		IAI47_16750	0.71	-1.4
3,545,608	-		IAI47_16750	0.71	+0.8
3,545,608	-		IAI47_16750	0.71	+2.6
3,545,631	+		IAI47_16750	0.74	-2.3
3,545,632	-		IAI47_16750	0.74	+0.3
3,545,667	+		IAI47_16750	0.77	-1.3
3,545,668	-		IAI47_16750	0.78	-1.0
3,545,742	+		IAI47_16750	0.85	-1.0
3,545,763	+		IAI47_16750	0.88	+0.8
3,545,763	+		IAI47_16750	0.88	+1.4
3,545,764	-		IAI47_16750	0.88	+2.9
3,545,780	+		IAI47_16750	0.89	-1.8
3,545,780	+		IAI47_16750	0.89	-0.2
3,545,780	+		IAI47_16750	0.89	+2.5
3,545,780	+		IAI47_16750	0.89	-0.1
3,545,781	-		IAI47_16750	0.89	+0.7
3,545,781	-		IAI47_16750	0.89	+2.5
3,545,781	-		IAI47_16750	0.89	+0.6
3,545,781	-		IAI47_16750	0.89	+0.6
3,545,781	-		IAI47_16750	0.89	+3.4
3,545,810	-				+0.4
3,545,810	-				+0.3
3,545,828	-				+2.4
3,545,828	-				-1.2
3,545,869	-				+5.2
3,545,869	-				-2.0
3,545,869	-				-0.9
3,545,883	+				+0.1
3,545,883	+				+0.6
3,545,909	+				-2.6
3,545,909	+				+2.3
3,545,909	+				-2.2
3,545,909	+				-0.8
3,545,910	-				-0.5
3,545,910	-				-1.6
3,545,910	-				-1.0
3,545,910	-				-0.3
3,545,945	+				+1.0
3,545,945	+				-0.1
3,545,945	+				+0.4
3,545,945	+				-1.4
3,545,946	-				-0.4
3,545,946	-				+0.3
3,545,946	-				-1.5
3,545,962	+				-0.5
3,545,962	+				+0.2
3,545,962	+				+0.8
3,545,963	-				+1.3
3,545,963	-				-3.4
3,545,998	-				+0.5
3,546,023	+				-2.9
3,546,024	-				+0.8
3,546,034	+				+0.9
3,546,034	+				-0.7
3,546,034	+				+0.8
3,546,034	+				-0.6
3,546,034	+				-1.2
3,546,035	-				-4.0
3,546,035	-				-1.2
3,546,035	-				-0.7
3,546,035	-				-1.4
3,546,046	+				+0.6
3,546,047	-				-1.0
3,546,082	-				+1.5
3,546,092	+				+0.3
3,546,092	+				-0.4
3,546,092	+				-0.7
3,546,092	+				-1.8
3,546,092	+				+1.3
3,546,093	-				-2.9
3,546,093	-				-0.2
3,546,127	+				+0.6
3,546,159	+				-1.9
3,546,159	+				-0.4
3,546,160	-				-1.4
3,546,181	+				+1.6
3,546,182	-				+0.9
3,546,216	+				-1.6
3,546,216	+				+3.5
3,546,216	+				+1.0
3,546,216	+				+0.0
3,546,216	+				-0.5
3,546,216	+				+0.6
3,546,216	+				+0.7
3,546,216	+				-0.8
3,546,216	+				-0.1
3,546,217	-				-1.9
3,546,217	-				-0.6
3,546,217	-				+1.0
3,546,217	-				-0.1
3,546,217	-				-0.9
3,546,217	-				-1.6
3,546,217	-				+1.0
3,546,217	-				+1.2
3,546,217	-				-0.0
3,546,223	-				+1.0
3,546,290	-				+0.2
3,546,291	+				+2.3
3,546,291	+				+2.9
3,546,291	+				-1.4
3,546,291	+				+0.4
3,546,291	+				-2.0
3,546,291	+				-0.9
3,546,292	-				-1.2
3,546,292	-				-0.3
3,546,292	-				+0.5
3,546,306	+				-1.7
3,546,307	-				-2.3
3,546,372	+		IAI47_16755	0.16	+1.6
3,546,373	-		IAI47_16755	0.16	+0.8
3,546,373	-		IAI47_16755	0.16	+1.9
3,546,426	-		IAI47_16755	0.22	-1.7
3,546,432	+		IAI47_16755	0.22	+0.6
3,546,435	+		IAI47_16755	0.22	-2.0
3,546,435	+		IAI47_16755	0.22	+0.4
3,546,435	+		IAI47_16755	0.22	-2.9
3,546,435	+		IAI47_16755	0.22	+2.2
3,546,435	+		IAI47_16755	0.22	-1.2
3,546,435	+		IAI47_16755	0.22	-1.3
3,546,435	+		IAI47_16755	0.22	-0.1
3,546,435	+		IAI47_16755	0.22	+1.8
3,546,436	-		IAI47_16755	0.23	-0.0
3,546,436	-		IAI47_16755	0.23	+0.6
3,546,436	-		IAI47_16755	0.23	-1.9
3,546,436	-		IAI47_16755	0.23	+0.7
3,546,436	-		IAI47_16755	0.23	-0.5
3,546,496	+		IAI47_16755	0.28	+0.3
3,546,497	-		IAI47_16755	0.29	+1.0
3,546,516	+		IAI47_16755	0.30	+2.3
3,546,565	-		IAI47_16755	0.35	-1.4
3,546,591	+		IAI47_16755	0.38	+0.0
3,546,624	+		IAI47_16755	0.41	-1.0
3,546,669	+		IAI47_16755	0.45	+1.3
3,546,690	+		IAI47_16755	0.47	-1.4
3,546,690	+		IAI47_16755	0.47	+1.4
3,546,691	-		IAI47_16755	0.48	-3.1
3,546,691	-		IAI47_16755	0.48	-0.5
3,546,691	-		IAI47_16755	0.48	+0.3
3,546,729	+		IAI47_16755	0.51	+1.5
3,546,812	-		IAI47_16755	0.59	-0.2
3,546,874	+		IAI47_16755	0.65	-0.4
3,546,874	+		IAI47_16755	0.65	+0.7
3,546,874	+		IAI47_16755	0.65	-1.4
3,546,874	+		IAI47_16755	0.65	-1.7
3,546,875	-		IAI47_16755	0.65	+3.7
3,546,875	-		IAI47_16755	0.65	+1.9
3,546,875	-		IAI47_16755	0.65	+0.8
3,546,875	-		IAI47_16755	0.65	+1.9
3,546,875	-		IAI47_16755	0.65	-0.4
3,546,875	-		IAI47_16755	0.65	-0.5
3,546,875	-		IAI47_16755	0.65	+1.1
3,546,883	+		IAI47_16755	0.66	-0.1
3,546,883	+		IAI47_16755	0.66	-1.7
3,546,883	+		IAI47_16755	0.66	-2.2
3,546,884	-		IAI47_16755	0.66	+0.6
3,546,924	+		IAI47_16755	0.70	+0.6
3,546,924	+		IAI47_16755	0.70	+1.1
3,546,924	+		IAI47_16755	0.70	-0.7
3,547,057	+		IAI47_16755	0.83	-0.6
3,547,057	-		IAI47_16755	0.83	-3.9
3,547,058	-		IAI47_16755	0.83	+0.8
3,547,058	-		IAI47_16755	0.83	+1.0
3,547,058	-		IAI47_16755	0.83	-1.3
3,547,058	-		IAI47_16755	0.83	-1.2
3,547,058	-		IAI47_16755	0.83	-0.2
3,547,058	-		IAI47_16755	0.83	-2.9
3,547,081	-		IAI47_16755	0.86	+2.4
3,547,081	-		IAI47_16755	0.86	+1.6
3,547,134	+				-2.4
3,547,134	+				-1.2
3,547,134	+				-0.2
3,547,134	+				-3.4
3,547,134	+				+0.9
3,547,134	+				+0.3
3,547,134	+				+0.0
3,547,134	+				+0.4
3,547,135	-				-2.1
3,547,135	-				+0.6
3,547,135	-				+1.6
3,547,135	-				-1.3
3,547,135	-				+1.4
3,547,135	-				+0.5
3,547,135	-				+0.5
3,547,135	-				+2.3
3,547,144	-				+1.2
3,547,226	-				-1.0
3,547,271	+				-1.9
3,547,271	+				+0.9
3,547,272	-				-0.2
3,547,272	-				+0.6
3,547,272	-				-0.7
3,547,299	+				-0.7
3,547,299	+				-2.6
3,547,299	+				+0.6
3,547,302	+				+0.9
3,547,303	-				-2.2
3,547,307	-				+5.3
3,547,316	+				-0.4
3,547,348	-				-0.7
3,547,353	+				-0.1
3,547,354	-				-0.5
3,547,354	-				+2.6
3,547,410	+				+1.8
3,547,410	+				+0.6
3,547,426	-				+0.6
3,547,426	-				+0.9
3,547,426	-				-0.5
3,547,433	+				-1.6
3,547,434	-				+2.0
3,547,467	+				-2.0
3,547,468	-				+0.6
3,547,488	+				+2.1
3,547,498	+				-2.6
3,547,498	+				-0.4
3,547,499	-				+1.2
3,547,522	+				+0.8
3,547,523	-				+4.2
3,547,560	+				-0.3
3,547,560	+				-3.0
3,547,598	+				+0.9
3,547,598	+				+1.4
3,547,599	-				-2.3
3,547,611	+				+0.1
3,547,611	+				+2.7
3,547,611	+				+1.1
3,547,611	+				-0.7
3,547,611	+				-1.7
3,547,611	+				+0.0
3,547,612	-				+1.5
3,547,612	-				-1.1
3,547,612	-				-2.1
3,547,612	-				+1.3
3,547,612	-				-1.5
3,547,612	-				-0.1
3,547,614	+				+0.6
3,547,614	+				-1.7
3,547,614	+				+1.0
3,547,614	+				+3.0
3,547,615	-				-2.5
3,547,615	-				-1.4
3,547,615	-				-0.8
3,547,615	-				-0.4
3,547,624	+				+1.6
3,547,624	+				+0.4
3,547,624	+				-0.5
3,547,634	+				+1.9
3,547,635	-				+1.8
3,547,669	-				-3.3
3,547,762	-		IAI47_16760	0.21	+1.8
3,547,770	+		IAI47_16760	0.22	-0.8
3,547,770	+		IAI47_16760	0.22	-1.3
3,547,771	-		IAI47_16760	0.22	+2.2
3,547,771	-		IAI47_16760	0.22	-1.1
3,547,837	+		IAI47_16760	0.31	-2.2
3,547,838	-		IAI47_16760	0.31	-2.7
3,547,888	-		IAI47_16760	0.38	+0.8
3,547,888	-		IAI47_16760	0.38	-2.0
3,548,100	+		IAI47_16760	0.67	-1.7
3,548,100	+		IAI47_16760	0.67	-2.6
3,548,101	-		IAI47_16760	0.67	-2.1
3,548,101	-		IAI47_16760	0.67	+0.8
3,548,135	+		IAI47_16760	0.71	+1.6