Strain Fitness in Pantoea sp. MT58 around IAI47_12980

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,746,144	+				+0.4
2,746,145	-				+1.2
2,746,154	+				-0.4
2,746,183	+				+1.0
2,746,184	-				-2.2
2,746,222	-				-2.1
2,746,270	+		IAI47_12975	0.14	-1.9
2,746,270	+		IAI47_12975	0.14	+0.0
2,746,270	+		IAI47_12975	0.14	-1.5
2,746,359	+		IAI47_12975	0.22	-1.2
2,746,359	+		IAI47_12975	0.22	-0.8
2,746,359	+		IAI47_12975	0.22	-1.9
2,746,359	+		IAI47_12975	0.22	+1.8
2,746,359	+		IAI47_12975	0.22	-1.9
2,746,359	+		IAI47_12975	0.22	-0.6
2,746,359	+		IAI47_12975	0.22	-2.1
2,746,359	+		IAI47_12975	0.22	-0.7
2,746,360	-		IAI47_12975	0.23	-2.9
2,746,360	-		IAI47_12975	0.23	-3.1
2,746,360	-		IAI47_12975	0.23	-0.2
2,746,360	-		IAI47_12975	0.23	+0.6
2,746,361	+		IAI47_12975	0.23	-1.2
2,746,361	+		IAI47_12975	0.23	-3.2
2,746,361	+		IAI47_12975	0.23	-1.2
2,746,361	+		IAI47_12975	0.23	+0.2
2,746,361	+		IAI47_12975	0.23	+1.5
2,746,361	+		IAI47_12975	0.23	+0.4
2,746,361	+		IAI47_12975	0.23	-2.5
2,746,361	+		IAI47_12975	0.23	-0.9
2,746,362	-		IAI47_12975	0.23	-0.5
2,746,362	-		IAI47_12975	0.23	-1.2
2,746,362	-		IAI47_12975	0.23	-2.6
2,746,362	-		IAI47_12975	0.23	+0.2
2,746,362	-		IAI47_12975	0.23	+0.5
2,746,362	-		IAI47_12975	0.23	+0.9
2,746,362	-		IAI47_12975	0.23	-1.6
2,746,362	-		IAI47_12975	0.23	-0.4
2,746,382	+		IAI47_12975	0.25	-1.6
2,746,382	+		IAI47_12975	0.25	-2.6
2,746,382	+		IAI47_12975	0.25	-2.6
2,746,382	+		IAI47_12975	0.25	-0.4
2,746,382	+		IAI47_12975	0.25	+1.8
2,746,383	-		IAI47_12975	0.25	+0.5
2,746,383	-		IAI47_12975	0.25	-0.2
2,746,383	-		IAI47_12975	0.25	+1.5
2,746,383	-		IAI47_12975	0.25	+1.9
2,746,386	+		IAI47_12975	0.25	+1.7
2,746,386	+		IAI47_12975	0.25	-2.9
2,746,386	+		IAI47_12975	0.25	-0.2
2,746,386	+		IAI47_12975	0.25	-0.3
2,746,386	+		IAI47_12975	0.25	+0.1
2,746,386	+		IAI47_12975	0.25	+0.4
2,746,386	+		IAI47_12975	0.25	-1.9
2,746,386	+		IAI47_12975	0.25	-0.4
2,746,387	-		IAI47_12975	0.25	+1.9
2,746,387	-		IAI47_12975	0.25	+1.4
2,746,387	-		IAI47_12975	0.25	-1.6
2,746,387	-		IAI47_12975	0.25	-0.6
2,746,387	-		IAI47_12975	0.25	-2.4
2,746,387	-		IAI47_12975	0.25	+0.4
2,746,387	-		IAI47_12975	0.25	-0.1
2,746,387	-		IAI47_12975	0.25	+0.1
2,746,387	-		IAI47_12975	0.25	-2.4
2,746,387	-		IAI47_12975	0.25	-2.0
2,746,387	-		IAI47_12975	0.25	+1.6
2,746,392	+		IAI47_12975	0.26	+0.3
2,746,392	+		IAI47_12975	0.26	+1.1
2,746,392	+		IAI47_12975	0.26	+1.9
2,746,392	+		IAI47_12975	0.26	+0.6
2,746,392	+		IAI47_12975	0.26	+2.1
2,746,392	+		IAI47_12975	0.26	-0.2
2,746,392	+		IAI47_12975	0.26	+0.1
2,746,393	-		IAI47_12975	0.26	-0.1
2,746,393	-		IAI47_12975	0.26	-1.8
2,746,393	-		IAI47_12975	0.26	+0.1
2,746,393	-		IAI47_12975	0.26	-1.6
2,746,393	-		IAI47_12975	0.26	-1.6
2,746,393	-		IAI47_12975	0.26	+1.1
2,746,393	-		IAI47_12975	0.26	+0.2
2,746,393	-		IAI47_12975	0.26	-1.9
2,746,505	+		IAI47_12975	0.37	-1.4
2,746,506	-		IAI47_12975	0.37	-1.2
2,746,506	-		IAI47_12975	0.37	+0.3
2,746,556	+		IAI47_12975	0.42	+0.4
2,746,556	+		IAI47_12975	0.42	-1.2
2,746,556	+		IAI47_12975	0.42	+0.9
2,746,556	+		IAI47_12975	0.42	+0.4
2,746,576	-		IAI47_12975	0.44	-0.6
2,746,598	+		IAI47_12975	0.46	+1.0
2,746,598	+		IAI47_12975	0.46	-0.8
2,746,610	+		IAI47_12975	0.48	+1.7
2,746,610	+		IAI47_12975	0.48	+3.0
2,746,610	+		IAI47_12975	0.48	+2.9
2,746,610	+		IAI47_12975	0.48	+2.1
2,746,610	+		IAI47_12975	0.48	-0.1
2,746,610	+		IAI47_12975	0.48	+0.1
2,746,610	+		IAI47_12975	0.48	-0.4
2,746,610	+		IAI47_12975	0.48	-0.5
2,746,610	+		IAI47_12975	0.48	+1.0
2,746,611	-		IAI47_12975	0.48	+0.3
2,746,611	-		IAI47_12975	0.48	-2.1
2,746,611	-		IAI47_12975	0.48	-2.1
2,746,611	-		IAI47_12975	0.48	+0.0
2,746,611	-		IAI47_12975	0.48	+0.6
2,746,627	+		IAI47_12975	0.49	+0.6
2,746,640	+		IAI47_12975	0.50	-0.5
2,746,753	+		IAI47_12975	0.62	-1.2
2,746,753	+		IAI47_12975	0.62	+2.1
2,746,753	+		IAI47_12975	0.62	+1.9
2,746,753	+		IAI47_12975	0.62	-1.0
2,746,753	+		IAI47_12975	0.62	+0.9
2,746,753	+		IAI47_12975	0.62	-0.8
2,746,753	+		IAI47_12975	0.62	-0.8
2,746,754	-		IAI47_12975	0.62	+1.0
2,746,754	-		IAI47_12975	0.62	-0.9
2,746,754	-		IAI47_12975	0.62	+1.4
2,746,754	-		IAI47_12975	0.62	-0.8
2,746,754	-		IAI47_12975	0.62	-2.1
2,746,754	-		IAI47_12975	0.62	+2.4
2,746,754	-		IAI47_12975	0.62	+0.3
2,746,754	-		IAI47_12975	0.62	+0.3
2,746,851	+		IAI47_12975	0.72	-1.6
2,746,851	+		IAI47_12975	0.72	-2.3
2,746,852	-		IAI47_12975	0.72	+1.9
2,747,002	+		IAI47_12975	0.87	+0.9
2,747,032	+		IAI47_12975	0.90	-0.8
2,747,032	+		IAI47_12975	0.90	-0.3
2,747,051	+				+2.0
2,747,075	+				+1.5
2,747,075	+				-2.1
2,747,133	+				+0.7
2,747,133	+				-0.2
2,747,134	-				+0.1
2,747,134	-				-0.7
2,747,156	+				-1.3
2,747,156	+				-0.6
2,747,156	+				+1.9
2,747,156	+				-0.9
2,747,156	+				-2.8
2,747,156	+				+0.2
2,747,156	+				-2.2
2,747,156	+				-0.9
2,747,157	-				+0.7
2,747,168	-				-3.5
2,747,168	-				-2.3
2,747,213	+				-3.2
2,747,214	-				-0.6
2,747,366	+		IAI47_12980	0.27	-0.0
2,747,366	+		IAI47_12980	0.27	-2.4
2,747,367	-		IAI47_12980	0.28	+0.3
2,747,367	-		IAI47_12980	0.28	+0.2
2,747,469	+		IAI47_12980	0.40	+2.7
2,747,521	-		IAI47_12980	0.46	+0.6
2,747,521	-		IAI47_12980	0.46	-0.9
2,747,521	-		IAI47_12980	0.46	+0.5
2,747,521	-		IAI47_12980	0.46	+1.3
2,747,759	+		IAI47_12980	0.75	+0.3
2,747,759	+		IAI47_12980	0.75	-2.7
2,747,760	-		IAI47_12980	0.75	-1.4
2,747,760	-		IAI47_12980	0.75	-0.8
2,747,821	-		IAI47_12980	0.83	-0.5
2,747,821	-		IAI47_12980	0.83	-1.0
2,747,822	+		IAI47_12980	0.83	+1.4
2,747,822	+		IAI47_12980	0.83	-2.5
2,747,823	-		IAI47_12980	0.83	+1.2
2,747,823	-		IAI47_12980	0.83	+1.7
2,747,823	-		IAI47_12980	0.83	-1.4
2,747,823	-		IAI47_12980	0.83	-1.6
2,747,841	+		IAI47_12980	0.85	-2.3
2,747,842	-		IAI47_12980	0.85	-0.6
2,747,905	+				-1.4
2,747,942	-				+1.9
2,748,032	-		IAI47_12985	0.22	-0.1
2,748,116	+		IAI47_12985	0.48	-0.9
2,748,117	-		IAI47_12985	0.49	+2.1
2,748,133	+		IAI47_12985	0.54	+0.3
2,748,133	+		IAI47_12985	0.54	-0.8
2,748,232	+		IAI47_12985	0.84	-3.0
2,748,232	+		IAI47_12985	0.84	+0.1
2,748,232	+		IAI47_12985	0.84	-1.8
2,748,233	-		IAI47_12985	0.85	-2.1
2,748,233	-		IAI47_12985	0.85	-0.6
2,748,233	-		IAI47_12985	0.85	+0.2
2,748,335	+				-2.7
2,748,335	+				-0.8
2,748,335	+				+3.6
2,748,335	+				-2.8
2,748,335	+				-1.7
2,748,335	+				+0.1
2,748,335	+				-0.2
2,748,335	+				-2.2
2,748,335	+				+1.4
2,748,335	+				+2.1
2,748,335	+				-2.3
2,748,336	-				-0.9
2,748,336	-				+2.3
2,748,336	-				+1.6
2,748,336	-				+1.5
2,748,336	-				+2.5
2,748,336	-				+0.8
2,748,336	-				+0.3
2,748,336	-				+0.9
2,748,336	-				-0.5
2,748,336	-				+3.6
2,748,336	-				+0.8
2,748,336	-				+1.9
2,748,337	+				-0.9
2,748,337	+				+0.7
2,748,337	+				-1.4
2,748,337	+				+1.6
2,748,337	+				+1.1
2,748,337	+				-1.6
2,748,337	+				-0.9
2,748,338	-				+0.7
2,748,338	-				+0.5
2,748,338	-				-0.9
2,748,338	-				+1.1
2,748,338	-				-2.4
2,748,338	-				-1.8
2,748,338	-				+1.4
2,748,338	-				-0.1
2,748,338	-				-0.2
2,748,338	-				+0.2
2,748,342	+				+0.4
2,748,342	+				+1.0
2,748,342	+				-0.3
2,748,342	+				+1.4
2,748,342	+				-0.5
2,748,342	+				-1.2
2,748,342	+				+0.1
2,748,343	-				-1.8
2,748,343	-				-1.4
2,748,343	-				+1.7
2,748,343	-				+4.3
2,748,343	-				+0.3
2,748,343	-				+1.0
2,748,343	-				-1.7
2,748,343	-				+1.6
2,748,347	+				-0.9
2,748,348	-				+0.5
2,748,348	-				-1.3
2,748,374	+				-3.2
2,748,375	-				-1.5
2,748,443	+		IAI47_12990	0.10	-1.4
2,748,443	+		IAI47_12990	0.10	-1.4
2,748,470	+		IAI47_12990	0.15	+1.4
2,748,470	+		IAI47_12990	0.15	+0.6
2,748,470	+		IAI47_12990	0.15	+0.5
2,748,531	+		IAI47_12990	0.27	-2.3
2,748,601	-		IAI47_12990	0.40	-0.3
2,748,601	-		IAI47_12990	0.40	-2.2
2,748,618	+		IAI47_12990	0.43	-0.1
2,748,618	+		IAI47_12990	0.43	+0.4
2,748,619	-		IAI47_12990	0.43	+2.1
2,748,619	-		IAI47_12990	0.43	-2.1
2,748,731	+		IAI47_12990	0.64	-0.1
2,748,731	+		IAI47_12990	0.64	+0.2
2,748,731	+		IAI47_12990	0.64	+2.1
2,748,731	+		IAI47_12990	0.64	+1.2
2,748,731	+		IAI47_12990	0.64	-0.7
2,748,731	+		IAI47_12990	0.64	-0.6
2,748,732	-		IAI47_12990	0.64	+0.8
2,748,732	-		IAI47_12990	0.64	-0.9
2,748,732	-		IAI47_12990	0.64	+0.2
2,748,732	-		IAI47_12990	0.64	+1.5
2,748,732	-		IAI47_12990	0.64	+0.7
2,748,732	-		IAI47_12990	0.64	+0.3
2,748,732	-		IAI47_12990	0.64	+1.0
2,748,734	+		IAI47_12990	0.64	-0.9
2,748,735	-		IAI47_12990	0.64	+2.6
2,748,858	+		IAI47_12990	0.87	+1.9
2,748,858	+		IAI47_12990	0.87	+0.2
2,748,858	+		IAI47_12990	0.87	-1.9
2,748,859	-		IAI47_12990	0.87	+0.3
2,748,859	-		IAI47_12990	0.87	-0.1
2,748,924	+				+1.4
2,748,924	+				-3.7
2,748,932	+				+3.0
2,748,933	-				-0.1
2,748,938	-				+2.3
2,748,944	-				+0.5