Strain Fitness in Pantoea sp. MT58 around IAI47_11080

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,333,477	+				-1.1
2,333,477	+				+0.2
2,333,477	+				+1.1
2,333,477	+				+1.2
2,333,477	+				-0.1
2,333,478	-				-0.3
2,333,478	-				+0.7
2,333,478	-				+2.0
2,333,498	+		IAI47_11075	0.12	-0.1
2,333,498	+		IAI47_11075	0.12	-0.9
2,333,499	-		IAI47_11075	0.12	+1.2
2,333,499	-		IAI47_11075	0.12	+2.0
2,333,501	+		IAI47_11075	0.12	+0.5
2,333,508	+		IAI47_11075	0.13	+1.2
2,333,508	+		IAI47_11075	0.13	-0.4
2,333,508	+		IAI47_11075	0.13	-1.6
2,333,509	-		IAI47_11075	0.13	+0.2
2,333,509	-		IAI47_11075	0.13	-0.4
2,333,509	-		IAI47_11075	0.13	+0.5
2,333,509	-		IAI47_11075	0.13	+1.4
2,333,511	+		IAI47_11075	0.13	+0.6
2,333,511	+		IAI47_11075	0.13	-1.6
2,333,511	+		IAI47_11075	0.13	-1.4
2,333,511	+		IAI47_11075	0.13	-0.6
2,333,511	+		IAI47_11075	0.13	-2.5
2,333,512	-		IAI47_11075	0.13	+1.6
2,333,512	-		IAI47_11075	0.13	+0.7
2,333,512	-		IAI47_11075	0.13	+0.4
2,333,512	-		IAI47_11075	0.13	+0.9
2,333,512	-		IAI47_11075	0.13	+0.2
2,333,512	-		IAI47_11075	0.13	-1.4
2,333,512	-		IAI47_11075	0.13	+1.2
2,333,512	-		IAI47_11075	0.13	-1.1
2,333,550	+		IAI47_11075	0.17	+2.0
2,333,574	+		IAI47_11075	0.19	+0.2
2,333,574	+		IAI47_11075	0.19	+1.1
2,333,574	+		IAI47_11075	0.19	-1.2
2,333,574	+		IAI47_11075	0.19	-1.1
2,333,574	+		IAI47_11075	0.19	-2.6
2,333,574	+		IAI47_11075	0.19	+1.0
2,333,575	-		IAI47_11075	0.19	+1.4
2,333,575	-		IAI47_11075	0.19	-2.7
2,333,575	-		IAI47_11075	0.19	-2.0
2,333,575	-		IAI47_11075	0.19	-0.2
2,333,575	-		IAI47_11075	0.19	-1.0
2,333,575	-		IAI47_11075	0.19	-1.9
2,333,575	-		IAI47_11075	0.19	-1.2
2,333,575	-		IAI47_11075	0.19	+3.0
2,333,583	+		IAI47_11075	0.20	-1.2
2,333,583	+		IAI47_11075	0.20	+0.3
2,333,583	+		IAI47_11075	0.20	-2.6
2,333,583	+		IAI47_11075	0.20	+0.6
2,333,584	-		IAI47_11075	0.20	+0.2
2,333,584	-		IAI47_11075	0.20	+1.8
2,333,584	-		IAI47_11075	0.20	-3.0
2,333,667	-		IAI47_11075	0.29	-1.3
2,333,667	-		IAI47_11075	0.29	+0.1
2,333,799	+		IAI47_11075	0.42	-1.4
2,333,800	-		IAI47_11075	0.42	+0.6
2,333,915	+		IAI47_11075	0.53	+0.2
2,333,915	+		IAI47_11075	0.53	-0.9
2,333,915	+		IAI47_11075	0.53	-1.4
2,333,915	+		IAI47_11075	0.53	-0.5
2,333,916	-		IAI47_11075	0.54	+1.9
2,333,916	-		IAI47_11075	0.54	+1.6
2,333,916	-		IAI47_11075	0.54	-2.9
2,333,916	-		IAI47_11075	0.54	-3.7
2,333,916	-		IAI47_11075	0.54	-1.6
2,333,916	-		IAI47_11075	0.54	+0.2
2,333,916	-		IAI47_11075	0.54	+1.8
2,334,064	+		IAI47_11075	0.68	+1.2
2,334,081	-		IAI47_11075	0.70	-0.8
2,334,081	-		IAI47_11075	0.70	+1.0
2,334,081	-		IAI47_11075	0.70	+0.4
2,334,090	-		IAI47_11075	0.71	+0.1
2,334,090	-		IAI47_11075	0.71	+1.8
2,334,096	+		IAI47_11075	0.72	+1.8
2,334,121	-		IAI47_11075	0.74	-1.4
2,334,121	-		IAI47_11075	0.74	-1.1
2,334,148	+		IAI47_11075	0.77	-1.3
2,334,148	+		IAI47_11075	0.77	+0.1
2,334,177	+		IAI47_11075	0.80	-1.0
2,334,190	+		IAI47_11075	0.81	-1.9
2,334,200	-		IAI47_11075	0.82	+0.3
2,334,280	+				-0.3
2,334,281	-				-0.8
2,334,281	-				+1.0
2,334,281	-				+1.1
2,334,290	+				+1.0
2,334,290	+				-0.1
2,334,290	+				-1.4
2,334,290	+				+0.2
2,334,290	+				+0.9
2,334,290	+				-0.6
2,334,290	+				+0.6
2,334,290	+				+0.5
2,334,291	-				-0.2
2,334,291	-				+3.5
2,334,291	-				+0.6
2,334,291	-				-1.3
2,334,327	+				+1.1
2,334,328	-				+1.6
2,334,328	-				+0.8
2,334,445	+				+1.1
2,334,446	-				-1.9
2,334,457	-				+2.5
2,334,457	-				+3.5
2,334,457	-				+0.2
2,334,462	+				-1.4
2,334,462	+				-0.1
2,334,550	+				-0.1
2,334,569	+		IAI47_11080	0.11	-1.0
2,334,569	+		IAI47_11080	0.11	+1.9
2,334,569	+		IAI47_11080	0.11	+0.0
2,334,569	+		IAI47_11080	0.11	+1.8
2,334,569	+		IAI47_11080	0.11	-1.5
2,334,570	-		IAI47_11080	0.11	+0.6
2,334,570	-				+1.2
2,334,570	-		IAI47_11080	0.11	-0.1
2,334,570	-		IAI47_11080	0.11	+0.0
2,334,681	-		IAI47_11080	0.19	-2.1
2,334,682	+		IAI47_11080	0.19	-0.2
2,334,682	+		IAI47_11080	0.19	+1.0
2,334,682	+		IAI47_11080	0.19	-1.2
2,334,682	+		IAI47_11080	0.19	-2.2
2,334,682	+		IAI47_11080	0.19	+1.2
2,334,683	-		IAI47_11080	0.19	+0.3
2,334,683	-		IAI47_11080	0.19	-3.6
2,334,683	-		IAI47_11080	0.19	-2.6
2,334,683	-		IAI47_11080	0.19	+0.3
2,334,729	-		IAI47_11080	0.23	-0.1
2,334,755	-		IAI47_11080	0.25	+0.6
2,334,839	+		IAI47_11080	0.31	-1.9
2,334,839	+		IAI47_11080	0.31	+1.8
2,334,847	+		IAI47_11080	0.31	+0.6
2,334,847	+		IAI47_11080	0.31	+0.6
2,334,847	+		IAI47_11080	0.31	-0.4
2,334,847	+		IAI47_11080	0.31	+1.0
2,334,847	+		IAI47_11080	0.31	+0.4
2,334,847	+		IAI47_11080	0.31	-3.6
2,334,847	+		IAI47_11080	0.31	-1.8
2,334,847	+		IAI47_11080	0.31	+0.0
2,334,847	+		IAI47_11080	0.31	+0.6
2,334,848	-		IAI47_11080	0.32	-0.2
2,334,848	-		IAI47_11080	0.32	-2.2
2,334,848	-		IAI47_11080	0.32	-1.1
2,334,848	-		IAI47_11080	0.32	-1.8
2,334,848	-		IAI47_11080	0.32	+0.8
2,334,848	-		IAI47_11080	0.32	-0.9
2,334,848	-		IAI47_11080	0.32	+0.1
2,334,848	-		IAI47_11080	0.32	-1.3
2,334,848	-		IAI47_11080	0.32	+0.6
2,334,848	-		IAI47_11080	0.32	-0.5
2,334,848	-		IAI47_11080	0.32	-0.1
2,334,848	-		IAI47_11080	0.32	+0.3
2,334,990	-		IAI47_11080	0.42	+1.9
2,335,011	-		IAI47_11080	0.44	-0.8
2,335,011	-		IAI47_11080	0.44	-2.1
2,335,011	-		IAI47_11080	0.44	+1.7
2,335,011	-		IAI47_11080	0.44	-1.2
2,335,011	-		IAI47_11080	0.44	+1.9
2,335,017	+		IAI47_11080	0.44	+0.4
2,335,017	+		IAI47_11080	0.44	+0.1
2,335,017	+		IAI47_11080	0.44	+0.3
2,335,017	+		IAI47_11080	0.44	+1.2
2,335,018	-		IAI47_11080	0.44	+0.5
2,335,059	+		IAI47_11080	0.47	-0.1
2,335,059	+		IAI47_11080	0.47	-1.8
2,335,171	+		IAI47_11080	0.56	-0.8
2,335,171	+		IAI47_11080	0.56	-1.8
2,335,171	+		IAI47_11080	0.56	-2.2
2,335,202	-		IAI47_11080	0.58	-1.9
2,335,338	+		IAI47_11080	0.68	-0.2
2,335,339	-		IAI47_11080	0.68	-1.4
2,335,422	-		IAI47_11080	0.75	-1.4
2,335,470	+		IAI47_11080	0.78	+1.9
2,335,470	+		IAI47_11080	0.78	+1.3
2,335,471	-		IAI47_11080	0.78	+2.4
2,335,471	-		IAI47_11080	0.78	-0.6
2,335,488	-		IAI47_11080	0.80	-1.8
2,335,524	-		IAI47_11080	0.82	+1.4
2,335,588	+		IAI47_11080	0.87	-0.8
2,335,588	+		IAI47_11080	0.87	+3.2
2,335,588	+		IAI47_11080	0.87	+0.5
2,335,589	-		IAI47_11080	0.87	-0.6
2,335,596	-		IAI47_11080	0.88	+0.5
2,335,596	-		IAI47_11080	0.88	-2.6
2,335,705	+				-2.5
2,335,705	+				-0.4
2,335,706	-				+1.1
2,335,706	-				-2.4
2,335,716	+				+1.2
2,335,717	-				-0.6
2,335,722	+				-1.6
2,335,722	+				-2.4
2,335,723	-				+0.6
2,335,723	-				+0.4
2,335,854	+				-1.1
2,335,854	+				+1.2
2,335,854	+				+0.0
2,335,855	-				-2.1
2,335,855	-				+0.2
2,335,866	+				+0.6
2,335,866	+				-1.2
2,335,867	-				-3.0
2,336,142	-		IAI47_11085	0.26	+0.1
2,336,161	+		IAI47_11085	0.28	+1.9
2,336,161	+		IAI47_11085	0.28	+0.5
2,336,161	+		IAI47_11085	0.28	-0.4
2,336,161	+		IAI47_11085	0.28	+0.0
2,336,162	-		IAI47_11085	0.28	-1.1
2,336,243	+		IAI47_11085	0.33	+3.1
2,336,243	+		IAI47_11085	0.33	-0.4
2,336,243	+		IAI47_11085	0.33	+1.8
2,336,243	+		IAI47_11085	0.33	+1.0
2,336,243	+		IAI47_11085	0.33	-0.9
2,336,244	-		IAI47_11085	0.33	-1.6
2,336,244	-		IAI47_11085	0.33	+0.5
2,336,244	-		IAI47_11085	0.33	-1.1
2,336,244	-		IAI47_11085	0.33	-2.5
2,336,244	-		IAI47_11085	0.33	-3.3
2,336,244	-		IAI47_11085	0.33	-0.2
2,336,245	+		IAI47_11085	0.33	-1.4
2,336,245	+		IAI47_11085	0.33	+1.9
2,336,246	-		IAI47_11085	0.33	+0.4
2,336,246	-		IAI47_11085	0.33	-0.8
2,336,267	-		IAI47_11085	0.35	-0.8
2,336,381	-		IAI47_11085	0.43	-2.4
2,336,423	-		IAI47_11085	0.46	-1.6
2,336,423	-		IAI47_11085	0.46	-1.1
2,336,423	-		IAI47_11085	0.46	-0.2
2,336,425	+		IAI47_11085	0.46	-2.4
2,336,425	+		IAI47_11085	0.46	+1.2
2,336,425	+		IAI47_11085	0.46	-0.4
2,336,426	-		IAI47_11085	0.46	-0.3
2,336,426	-		IAI47_11085	0.46	-1.0
2,336,426	-		IAI47_11085	0.46	-0.4
2,336,443	+		IAI47_11085	0.47	+0.2
2,336,443	+		IAI47_11085	0.47	-1.1
2,336,444	-		IAI47_11085	0.47	+0.7
2,336,444	-		IAI47_11085	0.47	-1.6
2,336,444	-		IAI47_11085	0.47	-1.8
2,336,446	+		IAI47_11085	0.47	-1.1
2,336,447	-		IAI47_11085	0.47	-0.2
2,336,484	-		IAI47_11085	0.50	-2.5
2,336,484	-		IAI47_11085	0.50	+0.6
2,336,560	-		IAI47_11085	0.55	+0.6
2,336,657	+		IAI47_11085	0.61	+0.5
2,336,658	-		IAI47_11085	0.61	+0.5
2,336,658	-		IAI47_11085	0.61	+2.3
2,336,734	+		IAI47_11085	0.67	+0.4
2,336,734	+		IAI47_11085	0.67	-1.2
2,336,735	-		IAI47_11085	0.67	+0.6
2,336,735	-		IAI47_11085	0.67	+0.9