Strain Fitness in Pantoea sp. MT58 around IAI47_05985

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,222,857	+		IAI47_05980	0.51	+2.8
1,222,857	+		IAI47_05980	0.51	+1.1
1,222,857	+		IAI47_05980	0.51	+1.2
1,222,857	+		IAI47_05980	0.51	+1.0
1,222,857	+		IAI47_05980	0.51	-1.8
1,222,857	+		IAI47_05980	0.51	+1.4
1,222,858	-		IAI47_05980	0.51	+2.5
1,222,869	+		IAI47_05980	0.52	+0.6
1,222,869	+		IAI47_05980	0.52	-0.4
1,222,870	-		IAI47_05980	0.52	+0.4
1,222,870	-		IAI47_05980	0.52	+0.8
1,222,881	+		IAI47_05980	0.53	+0.8
1,222,887	+		IAI47_05980	0.53	-0.7
1,222,887	+		IAI47_05980	0.53	-2.3
1,222,887	+		IAI47_05980	0.53	+1.7
1,222,888	-		IAI47_05980	0.53	-1.8
1,222,888	-		IAI47_05980	0.53	-2.2
1,222,938	+		IAI47_05980	0.55	-0.2
1,222,938	+		IAI47_05980	0.55	-0.2
1,222,938	+		IAI47_05980	0.55	-2.1
1,222,938	+		IAI47_05980	0.55	+0.6
1,222,938	+		IAI47_05980	0.55	-1.4
1,222,938	+		IAI47_05980	0.55	-2.1
1,222,938	+		IAI47_05980	0.55	+1.3
1,222,938	+		IAI47_05980	0.55	+1.3
1,222,938	+		IAI47_05980	0.55	+1.2
1,222,938	+		IAI47_05980	0.55	-1.2
1,222,938	+		IAI47_05980	0.55	+0.7
1,222,938	+		IAI47_05980	0.55	+0.8
1,222,938	+		IAI47_05980	0.55	-1.9
1,222,938	+		IAI47_05980	0.55	-1.2
1,222,939	-		IAI47_05980	0.55	-0.1
1,222,939	-		IAI47_05980	0.55	-2.1
1,222,939	-		IAI47_05980	0.55	+1.0
1,222,939	-		IAI47_05980	0.55	+2.9
1,222,939	-		IAI47_05980	0.55	+1.6
1,222,939	-		IAI47_05980	0.55	+1.2
1,222,939	-		IAI47_05980	0.55	+1.8
1,222,939	-		IAI47_05980	0.55	-1.6
1,222,939	-		IAI47_05980	0.55	+1.1
1,222,939	-		IAI47_05980	0.55	+1.5
1,222,939	-		IAI47_05980	0.55	+0.4
1,222,939	-		IAI47_05980	0.55	-2.5
1,222,939	-		IAI47_05980	0.55	-1.2
1,223,013	+		IAI47_05980	0.59	+1.4
1,223,013	+		IAI47_05980	0.59	-0.7
1,223,019	+		IAI47_05980	0.59	-1.5
1,223,019	+		IAI47_05980	0.59	+1.4
1,223,019	+				+2.4
1,223,022	+		IAI47_05980	0.59	+1.7
1,223,022	+		IAI47_05980	0.59	-1.3
1,223,022	+		IAI47_05980	0.59	+1.8
1,223,023	-		IAI47_05980	0.59	+0.4
1,223,047	+		IAI47_05980	0.61	+2.1
1,223,047	+		IAI47_05980	0.61	-2.5
1,223,048	-		IAI47_05980	0.61	-0.6
1,223,069	+		IAI47_05980	0.62	-1.2
1,223,069	+		IAI47_05980	0.62	+0.9
1,223,069	+		IAI47_05980	0.62	-1.0
1,223,069	+		IAI47_05980	0.62	+0.1
1,223,069	+		IAI47_05980	0.62	+1.1
1,223,085	+		IAI47_05980	0.62	-0.9
1,223,109	+		IAI47_05980	0.64	+0.1
1,223,137	+		IAI47_05980	0.65	+1.3
1,223,137	+		IAI47_05980	0.65	-1.0
1,223,137	+		IAI47_05980	0.65	+0.2
1,223,137	+		IAI47_05980	0.65	-2.1
1,223,138	-		IAI47_05980	0.65	-0.9
1,223,138	-		IAI47_05980	0.65	+1.9
1,223,139	+		IAI47_05980	0.65	+1.7
1,223,139	+		IAI47_05980	0.65	+1.5
1,223,139	+		IAI47_05980	0.65	+1.2
1,223,140	-		IAI47_05980	0.65	+0.5
1,223,140	-		IAI47_05980	0.65	+2.0
1,223,140	-		IAI47_05980	0.65	-0.9
1,223,140	-		IAI47_05980	0.65	+0.4
1,223,261	+		IAI47_05980	0.71	-0.3
1,223,281	+		IAI47_05980	0.72	-0.2
1,223,281	+		IAI47_05980	0.72	+0.6
1,223,281	+		IAI47_05980	0.72	-0.6
1,223,281	+		IAI47_05980	0.72	+1.0
1,223,282	-		IAI47_05980	0.72	+1.1
1,223,282	-		IAI47_05980	0.72	+0.6
1,223,282	-		IAI47_05980	0.72	-1.7
1,223,282	-		IAI47_05980	0.72	-0.8
1,223,282	-		IAI47_05980	0.72	+2.4
1,223,294	+		IAI47_05980	0.73	+2.0
1,223,409	+		IAI47_05980	0.78	+1.4
1,223,409	+		IAI47_05980	0.78	+1.5
1,223,409	+		IAI47_05980	0.78	+0.5
1,223,409	+		IAI47_05980	0.78	+0.4
1,223,409	+		IAI47_05980	0.78	+0.2
1,223,409	+		IAI47_05980	0.78	-2.1
1,223,409	+		IAI47_05980	0.78	-0.7
1,223,409	+		IAI47_05980	0.78	+0.7
1,223,410	-		IAI47_05980	0.78	-3.0
1,223,410	-		IAI47_05980	0.78	-1.9
1,223,410	-		IAI47_05980	0.78	-2.8
1,223,441	+		IAI47_05980	0.80	-0.2
1,223,441	+		IAI47_05980	0.80	+0.5
1,223,441	+				+1.4
1,223,442	-		IAI47_05980	0.80	+2.9
1,223,442	-		IAI47_05980	0.80	+0.4
1,223,442	-		IAI47_05980	0.80	-0.6
1,223,442	-		IAI47_05980	0.80	+0.6
1,223,442	-		IAI47_05980	0.80	-1.4
1,223,474	+		IAI47_05980	0.81	+0.5
1,223,474	+		IAI47_05980	0.81	-0.8
1,223,475	-		IAI47_05980	0.82	-0.3
1,223,558	-		IAI47_05980	0.86	-2.0
1,223,558	-		IAI47_05980	0.86	+2.1
1,223,574	+		IAI47_05980	0.86	-0.2
1,223,574	+		IAI47_05980	0.86	+1.4
1,223,574	+		IAI47_05980	0.86	+1.9
1,223,575	-		IAI47_05980	0.86	+0.7
1,223,575	-		IAI47_05980	0.86	+0.6
1,223,575	-		IAI47_05980	0.86	-1.1
1,223,595	-		IAI47_05980	0.87	+1.3
1,223,614	+		IAI47_05980	0.88	-2.4
1,223,614	+		IAI47_05980	0.88	+1.4
1,223,614	+		IAI47_05980	0.88	+0.9
1,223,614	+		IAI47_05980	0.88	+2.2
1,223,615	-		IAI47_05980	0.88	-0.5
1,223,615	-		IAI47_05980	0.88	-0.9
1,223,615	-		IAI47_05980	0.88	-0.2
1,223,649	+				+1.5
1,223,650	-				-0.7
1,223,650	-				-1.6
1,223,680	+				+2.6
1,223,680	+				-2.7
1,223,681	-				-2.7
1,223,681	-				+0.4
1,223,681	-				-2.5
1,223,681	-				-1.2
1,223,697	+				+2.6
1,223,697	+				+0.6
1,223,698	-				+3.9
1,223,698	-				+1.8
1,223,703	+				-0.3
1,223,703	+				-1.3
1,223,703	+				-2.2
1,223,703	+				-2.3
1,223,703	+				-0.2
1,223,703	+				+1.2
1,223,703	+				-1.2
1,223,704	-				+0.6
1,223,704	-				-1.0
1,223,704	-				+1.5
1,223,704	-				+2.9
1,223,704	-				-0.2
1,223,709	+				-1.1
1,223,709	+				+0.5
1,223,709	+				-0.7
1,223,710	-				-0.1
1,223,724	+				+0.9
1,223,851	+				-0.6
1,223,851	+				-2.2
1,223,851	+				-1.2
1,223,851	+				-2.5
1,223,852	-				+0.7
1,223,852	-				+1.9
1,223,852	-				-0.4
1,223,858	+				-0.6
1,223,858	+				+0.0
1,223,858	+				-2.1
1,223,858	+				+1.8
1,223,859	-				+1.5
1,223,859	-				+1.8
1,223,867	+				+0.7
1,223,867	+				+3.9
1,223,895	+				-0.9
1,223,896	+				+3.2
1,223,896	+				+0.2
1,223,896	+				+0.0
1,223,897	-				-0.3
1,223,897	-				-0.0
1,224,000	+		IAI47_05985	0.26	-1.1
1,224,000	+		IAI47_05985	0.26	+0.1
1,224,001	-		IAI47_05985	0.26	+0.6
1,224,001	-		IAI47_05985	0.26	+0.4
1,224,001	-		IAI47_05985	0.26	+1.8
1,224,001	-		IAI47_05985	0.26	+2.2
1,224,001	-		IAI47_05985	0.26	+2.0
1,224,001	-		IAI47_05985	0.26	+0.9
1,224,001	-		IAI47_05985	0.26	-2.1
1,224,100	+		IAI47_05985	0.43	-0.9
1,224,117	+		IAI47_05985	0.46	-0.5
1,224,118	-		IAI47_05985	0.46	+0.5
1,224,118	-		IAI47_05985	0.46	-1.2
1,224,118	-		IAI47_05985	0.46	-1.4
1,224,183	+		IAI47_05985	0.58	+2.1
1,224,183	+		IAI47_05985	0.58	-0.0
1,224,183	+		IAI47_05985	0.58	-0.6
1,224,183	+		IAI47_05985	0.58	+2.1
1,224,184	-		IAI47_05985	0.58	-0.9
1,224,184	-		IAI47_05985	0.58	-2.6
1,224,184	-		IAI47_05985	0.58	+1.1
1,224,184	-		IAI47_05985	0.58	-3.0
1,224,200	-		IAI47_05985	0.61	+1.4
1,224,241	+		IAI47_05985	0.68	-1.1
1,224,241	+		IAI47_05985	0.68	-0.0
1,224,241	+		IAI47_05985	0.68	-1.4
1,224,242	-		IAI47_05985	0.68	+2.8
1,224,293	+		IAI47_05985	0.77	+2.4
1,224,293	+		IAI47_05985	0.77	+1.7
1,224,294	-		IAI47_05985	0.77	+1.4
1,224,294	-		IAI47_05985	0.77	+0.4
1,224,294	-		IAI47_05985	0.77	+1.2
1,224,294	-		IAI47_05985	0.77	+0.9
1,224,296	+		IAI47_05985	0.77	+0.7
1,224,398	+				+0.2
1,224,398	+				-0.6
1,224,398	+				+1.7
1,224,399	-				+1.7
1,224,399	-				-1.4
1,224,399	-				-2.9
1,224,399	-				+0.7
1,224,399	-				+0.3
1,224,399	-				-0.0
1,224,411	+				+1.1
1,224,412	-				+1.5
1,224,412	-				+1.9
1,224,423	+				+1.0
1,224,423	+				+3.5
1,224,423	+				+0.9
1,224,423	+				+1.6
1,224,427	+				-0.2
1,224,427	+				+0.8
1,224,427	+				+1.0
1,224,427	+				+0.1
1,224,427	+				-0.5
1,224,427	+				+0.6
1,224,427	+				+0.1
1,224,427	+				-2.2
1,224,427	+				-0.6
1,224,427	+				+0.1
1,224,428	-				+1.5
1,224,428	-				+3.2
1,224,428	-				+0.9
1,224,428	-				+1.0
1,224,428	-				-2.9
1,224,428	-				+2.0
1,224,428	-				+1.8
1,224,428	-				+0.1
1,224,428	-				+0.2
1,224,428	-				+0.6
1,224,428	-				-1.0
1,224,437	+				+0.6
1,224,437	+				-0.0
1,224,438	-				+1.1
1,224,450	+				-1.2
1,224,450	+				-0.5
1,224,461	-		IAI47_05990	0.11	+2.4
1,224,475	+		IAI47_05990	0.16	+1.0
1,224,487	+		IAI47_05990	0.19	-1.4
1,224,488	-		IAI47_05990	0.20	-1.6
1,224,497	+		IAI47_05990	0.23	-0.4
1,224,497	+		IAI47_05990	0.23	-1.2
1,224,497	+		IAI47_05990	0.23	-3.4
1,224,497	+		IAI47_05990	0.23	+0.3
1,224,497	+		IAI47_05990	0.23	+2.4
1,224,497	+		IAI47_05990	0.23	+2.3
1,224,497	+		IAI47_05990	0.23	-1.4
1,224,497	+		IAI47_05990	0.23	+2.6
1,224,497	+		IAI47_05990	0.23	-0.2
1,224,497	+		IAI47_05990	0.23	-0.1
1,224,498	-		IAI47_05990	0.23	+1.9
1,224,498	-		IAI47_05990	0.23	-2.3
1,224,498	-		IAI47_05990	0.23	+1.4
1,224,498	-		IAI47_05990	0.23	-0.2
1,224,498	-		IAI47_05990	0.23	+2.1
1,224,498	-		IAI47_05990	0.23	+0.3
1,224,498	-		IAI47_05990	0.23	+0.2
1,224,498	-		IAI47_05990	0.23	+3.6
1,224,498	-		IAI47_05990	0.23	+1.3
1,224,498	-		IAI47_05990	0.23	-1.9
1,224,498	-		IAI47_05990	0.23	+1.6
1,224,498	-		IAI47_05990	0.23	+3.6
1,224,498	-		IAI47_05990	0.23	+2.7
1,224,504	+		IAI47_05990	0.25	-2.3
1,224,504	+		IAI47_05990	0.25	-0.8
1,224,504	+		IAI47_05990	0.25	+0.8
1,224,504	+		IAI47_05990	0.25	+0.6
1,224,505	-		IAI47_05990	0.25	-0.1
1,224,505	-		IAI47_05990	0.25	-2.3
1,224,505	-		IAI47_05990	0.25	-1.2
1,224,505	-		IAI47_05990	0.25	+2.3
1,224,505	-		IAI47_05990	0.25	-3.5
1,224,510	+		IAI47_05990	0.27	-0.2
1,224,511	-		IAI47_05990	0.27	-2.9
1,224,511	-		IAI47_05990	0.27	+1.1
1,224,511	-		IAI47_05990	0.27	+2.6
1,224,511	-		IAI47_05990	0.27	-1.1
1,224,560	-		IAI47_05990	0.44	+2.8
1,224,560	-		IAI47_05990	0.44	-0.2
1,224,570	+		IAI47_05990	0.47	+1.3
1,224,570	+		IAI47_05990	0.47	-2.5
1,224,589	+		IAI47_05990	0.53	+3.1
1,224,606	+		IAI47_05990	0.59	+2.2
1,224,620	+		IAI47_05990	0.63	+1.5
1,224,620	+		IAI47_05990	0.63	-0.6
1,224,620	+		IAI47_05990	0.63	+1.4
1,224,620	+		IAI47_05990	0.63	+1.5
1,224,620	+		IAI47_05990	0.63	-0.8
1,224,620	+		IAI47_05990	0.63	+1.7
1,224,620	+		IAI47_05990	0.63	-0.5
1,224,621	-		IAI47_05990	0.64	-0.6
1,224,625	+		IAI47_05990	0.65	-1.3
1,224,625	+		IAI47_05990	0.65	-0.3
1,224,625	+		IAI47_05990	0.65	-0.4
1,224,625	+		IAI47_05990	0.65	+1.0
1,224,626	-		IAI47_05990	0.65	-1.8
1,224,626	-		IAI47_05990	0.65	+0.0
1,224,713	+				-1.9
1,224,713	+				+1.6
1,224,713	+				+2.6
1,224,713	+				+0.6
1,224,714	-				+0.3
1,224,714	-				-0.7
1,224,714	-				-0.9
1,224,714	-				+1.3
1,224,720	+				-0.0
1,224,720	+				+0.1
1,224,721	-				-0.5
1,224,819	-				+0.9
1,224,822	+				-1.6
1,224,822	+				+2.4
1,224,823	-				+3.2
1,224,823	-				+3.6
1,224,823	-				-0.4
1,224,867	+		IAI47_05995	0.13	-0.9
1,224,874	+		IAI47_05995	0.13	+1.2
1,224,876	+		IAI47_05995	0.13	-1.2
1,224,876	+		IAI47_05995	0.13	-0.1
1,224,876	+		IAI47_05995	0.13	-0.6
1,224,891	+		IAI47_05995	0.15	-0.9
1,224,891	+		IAI47_05995	0.15	-1.6
1,224,891	+		IAI47_05995	0.15	+0.5
1,224,987	+		IAI47_05995	0.24	-0.6
1,224,987	+		IAI47_05995	0.24	+1.6
1,224,987	+		IAI47_05995	0.24	+0.4
1,224,996	+		IAI47_05995	0.25	-3.7
1,224,996	+		IAI47_05995	0.25	+1.4
1,224,996	+		IAI47_05995	0.25	+2.3
1,224,996	+		IAI47_05995	0.25	-0.3
1,224,996	+		IAI47_05995	0.25	+0.7
1,224,996	+		IAI47_05995	0.25	-0.2
1,224,996	+		IAI47_05995	0.25	-2.2
1,224,997	-		IAI47_05995	0.25	+1.2
1,224,997	-		IAI47_05995	0.25	+0.1
1,224,997	-		IAI47_05995	0.25	+0.3
1,225,008	+		IAI47_05995	0.26	-1.4
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