Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01145 and BWI76_RS01150 are separated by 55 nucleotides BWI76_RS01150 and BWI76_RS01155 are separated by 22 nucleotides BWI76_RS01155 and BWI76_RS01160 are separated by 45 nucleotides BWI76_RS01160 and BWI76_RS01165 are separated by 461 nucleotides BWI76_RS01165 and BWI76_RS01170 are separated by 3 nucleotides
BWI76_RS01145: BWI76_RS01145 - tRNA-Arg, at 236,726 to 236,802
_RS01145
BWI76_RS01150: BWI76_RS01150 - tRNA-His, at 236,858 to 236,933
_RS01150
BWI76_RS01155: BWI76_RS01155 - tRNA-Leu, at 236,956 to 237,042
_RS01155
BWI76_RS01160: BWI76_RS01160 - tRNA-Pro, at 237,088 to 237,164
_RS01160
BWI76_RS01165: BWI76_RS01165 - protoheme IX biogenesis protein HemY, at 237,626 to 238,822
_RS01165
BWI76_RS01170: BWI76_RS01170 - uroporphyrinogen-III C-methyltransferase, at 238,826 to 239,995
_RS01170
Position (kb) 237
238
239 Strain fitness (log2 ratio) -1
0
1 at 237.382 kb on - strand at 237.411 kb on + strand at 237.651 kb on + strand at 237.742 kb on - strand at 237.830 kb on + strand, within BWI76_RS01165 at 237.855 kb on + strand, within BWI76_RS01165 at 237.889 kb on - strand, within BWI76_RS01165 at 238.154 kb on + strand, within BWI76_RS01165 at 238.162 kb on - strand, within BWI76_RS01165 at 238.230 kb on + strand, within BWI76_RS01165 at 238.564 kb on + strand, within BWI76_RS01165 at 238.944 kb on - strand, within BWI76_RS01170 at 239.119 kb on - strand, within BWI76_RS01170 at 239.155 kb on + strand, within BWI76_RS01170 at 239.528 kb on + strand, within BWI76_RS01170 at 239.545 kb on + strand, within BWI76_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 237,382 - -0.2 237,411 + -0.3 237,651 + -0.2 237,742 - -0.2 237,830 + BWI76_RS01165 0.17 +0.1 237,855 + BWI76_RS01165 0.19 +0.6 237,889 - BWI76_RS01165 0.22 +0.3 238,154 + BWI76_RS01165 0.44 -0.0 238,162 - BWI76_RS01165 0.45 -0.5 238,230 + BWI76_RS01165 0.50 +1.0 238,564 + BWI76_RS01165 0.78 -0.8 238,944 - BWI76_RS01170 0.10 -0.3 239,119 - BWI76_RS01170 0.25 -0.2 239,155 + BWI76_RS01170 0.28 -1.3 239,528 + BWI76_RS01170 0.60 +0.1 239,545 + BWI76_RS01170 0.61 -0.4
Or see this region's nucleotide sequence