Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03570 and AO353_03575 overlap by 11 nucleotides AO353_03575 and AO353_03580 are separated by 139 nucleotides AO353_03580 and AO353_03585 are separated by 0 nucleotides AO353_03585 and AO353_03590 are separated by 118 nucleotides
AO353_03570: AO353_03570 - protein TolQ, at 763,580 to 764,275
_03570
AO353_03575: AO353_03575 - 4-hydroxybenzoyl-CoA thioesterase, at 764,265 to 764,732
_03575
AO353_03580: AO353_03580 - ATP-dependent DNA helicase RuvB, at 764,872 to 765,933
_03580
AO353_03585: AO353_03585 - ATP-dependent DNA helicase RuvA, at 765,934 to 766,542
_03585
AO353_03590: AO353_03590 - crossover junction endodeoxyribonuclease RuvC, at 766,661 to 767,185
_03590
Position (kb) 764
765
766 Strain fitness (log2 ratio) -2
-1
0
1 at 764.334 kb on + strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.445 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.488 kb on - strand, within AO353_03575 at 764.488 kb on - strand, within AO353_03575 at 764.525 kb on - strand, within AO353_03575 at 764.628 kb on - strand, within AO353_03575 at 764.634 kb on - strand, within AO353_03575 at 764.634 kb on - strand, within AO353_03575 at 764.639 kb on - strand, within AO353_03575 at 764.639 kb on - strand, within AO353_03575 at 764.639 kb on - strand, within AO353_03575 at 764.639 kb on - strand, within AO353_03575 at 764.643 kb on - strand, within AO353_03575 at 764.643 kb on - strand, within AO353_03575 at 764.648 kb on - strand, within AO353_03575 at 764.648 kb on - strand, within AO353_03575 at 764.651 kb on - strand, within AO353_03575 at 764.651 kb on - strand, within AO353_03575 at 764.651 kb on - strand, within AO353_03575 at 764.651 kb on - strand, within AO353_03575 at 764.681 kb on - strand, within AO353_03575 at 764.681 kb on - strand, within AO353_03575 at 764.684 kb on - strand, within AO353_03575 at 764.684 kb on - strand, within AO353_03575 at 764.684 kb on - strand, within AO353_03575 at 764.733 kb on - strand at 764.733 kb on - strand at 764.733 kb on - strand at 764.733 kb on - strand at 764.733 kb on - strand at 764.733 kb on - strand at 764.738 kb on - strand at 764.738 kb on - strand at 764.745 kb on - strand at 764.831 kb on - strand at 764.851 kb on + strand at 764.852 kb on - strand at 764.852 kb on - strand at 764.882 kb on - strand at 764.921 kb on - strand at 764.954 kb on + strand at 764.954 kb on + strand at 764.955 kb on - strand at 764.955 kb on - strand at 764.997 kb on + strand, within AO353_03580 at 764.999 kb on + strand, within AO353_03580 at 764.999 kb on + strand, within AO353_03580 at 765.198 kb on + strand, within AO353_03580 at 765.198 kb on + strand, within AO353_03580 at 765.199 kb on - strand, within AO353_03580 at 765.205 kb on - strand, within AO353_03580 at 765.205 kb on - strand, within AO353_03580 at 765.274 kb on - strand, within AO353_03580 at 765.376 kb on - strand, within AO353_03580 at 765.548 kb on + strand, within AO353_03580 at 765.836 kb on + strand at 765.837 kb on - strand at 765.935 kb on + strand at 765.936 kb on - strand at 765.936 kb on - strand at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.583 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.655 kb on - strand at 766.831 kb on + strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 764,334 + AO353_03575 0.15 -1.4 764,335 - AO353_03575 0.15 -1.4 764,335 - AO353_03575 0.15 +0.5 764,335 - AO353_03575 0.15 -1.1 764,335 - AO353_03575 0.15 -0.9 764,367 - AO353_03575 0.22 -0.4 764,367 - AO353_03575 0.22 -0.4 764,367 - AO353_03575 0.22 +0.7 764,367 - AO353_03575 0.22 -0.6 764,367 - AO353_03575 0.22 -0.7 764,367 - AO353_03575 0.22 -0.9 764,445 - AO353_03575 0.38 -0.2 764,476 - AO353_03575 0.45 +0.9 764,476 - AO353_03575 0.45 -0.4 764,476 - AO353_03575 0.45 +0.6 764,476 - AO353_03575 0.45 -0.2 764,488 - AO353_03575 0.48 -1.1 764,488 - AO353_03575 0.48 +1.1 764,525 - AO353_03575 0.56 -0.3 764,628 - AO353_03575 0.78 -0.3 764,634 - AO353_03575 0.79 +0.1 764,634 - AO353_03575 0.79 +0.8 764,639 - AO353_03575 0.80 -0.7 764,639 - AO353_03575 0.80 -0.5 764,639 - AO353_03575 0.80 -2.0 764,639 - AO353_03575 0.80 -2.2 764,643 - AO353_03575 0.81 -0.0 764,643 - AO353_03575 0.81 +0.9 764,648 - AO353_03575 0.82 -0.1 764,648 - AO353_03575 0.82 -1.2 764,651 - AO353_03575 0.82 +0.1 764,651 - AO353_03575 0.82 -0.0 764,651 - AO353_03575 0.82 -0.0 764,651 - AO353_03575 0.82 +1.0 764,681 - AO353_03575 0.89 -0.5 764,681 - AO353_03575 0.89 -0.7 764,684 - AO353_03575 0.90 -0.9 764,684 - AO353_03575 0.90 +0.7 764,684 - AO353_03575 0.90 -1.0 764,733 - -0.3 764,733 - +0.1 764,733 - -0.1 764,733 - -1.5 764,733 - -0.7 764,733 - +1.5 764,738 - +1.0 764,738 - -0.3 764,745 - -1.0 764,831 - -0.3 764,851 + -0.6 764,852 - +0.5 764,852 - -0.5 764,882 - -0.7 764,921 - +0.9 764,954 + -2.4 764,954 + -1.6 764,955 - -0.9 764,955 - -1.4 764,997 + AO353_03580 0.12 -2.6 764,999 + AO353_03580 0.12 -1.5 764,999 + AO353_03580 0.12 +0.5 765,198 + AO353_03580 0.31 -1.0 765,198 + AO353_03580 0.31 -0.5 765,199 - AO353_03580 0.31 -1.4 765,205 - AO353_03580 0.31 -1.5 765,205 - AO353_03580 0.31 -1.7 765,274 - AO353_03580 0.38 -2.4 765,376 - AO353_03580 0.47 -1.2 765,548 + AO353_03580 0.64 -1.7 765,836 + -0.9 765,837 - +0.1 765,935 + -0.2 765,936 - -1.6 765,936 - -1.6 766,480 + AO353_03585 0.90 -2.0 766,480 + AO353_03585 0.90 +0.1 766,480 + AO353_03585 0.90 -1.2 766,480 + AO353_03585 0.90 -1.9 766,481 - AO353_03585 0.90 -0.8 766,481 - AO353_03585 0.90 -0.5 766,481 - AO353_03585 0.90 -1.4 766,583 + -1.7 766,654 + -0.1 766,654 + -1.9 766,654 + -1.2 766,655 - +0.3 766,831 + AO353_03590 0.32 -0.1 766,882 - AO353_03590 0.42 -1.4 766,882 - AO353_03590 0.42 -1.8
Or see this region's nucleotide sequence