Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03390 and AO353_03395 are separated by 122 nucleotides AO353_03395 and AO353_03400 are separated by 117 nucleotides
AO353_03390: AO353_03390 - sugar ABC transporter permease, at 721,617 to 722,525
_03390
AO353_03395: AO353_03395 - sugar ABC transporter substrate-binding protein, at 722,648 to 723,955
_03395
AO353_03400: AO353_03400 - D-mannose isomerase (EC 5.3.1.7) <small>(from data)</small>, at 724,073 to 725,332
_03400
Position (kb) 722
723
724 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 721.648 kb on + strand at 721.649 kb on - strand at 721.649 kb on - strand at 721.655 kb on - strand at 721.655 kb on - strand at 721.655 kb on - strand at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.774 kb on + strand, within AO353_03390 at 721.775 kb on - strand, within AO353_03390 at 721.775 kb on - strand, within AO353_03390 at 721.894 kb on + strand, within AO353_03390 at 721.894 kb on + strand, within AO353_03390 at 721.894 kb on + strand, within AO353_03390 at 721.894 kb on + strand, within AO353_03390 at 721.894 kb on + strand, within AO353_03390 at 721.894 kb on + strand, within AO353_03390 at 721.894 kb on + strand, within AO353_03390 at 721.894 kb on + strand, within AO353_03390 at 722.026 kb on + strand, within AO353_03390 at 722.026 kb on + strand, within AO353_03390 at 722.027 kb on - strand, within AO353_03390 at 722.027 kb on - strand, within AO353_03390 at 722.176 kb on + strand, within AO353_03390 at 722.176 kb on + strand, within AO353_03390 at 722.176 kb on + strand, within AO353_03390 at 722.176 kb on + strand, within AO353_03390 at 722.176 kb on + strand, within AO353_03390 at 722.176 kb on + strand, within AO353_03390 at 722.176 kb on + strand, within AO353_03390 at 722.176 kb on + strand, within AO353_03390 at 722.176 kb on + strand, within AO353_03390 at 722.177 kb on - strand, within AO353_03390 at 722.177 kb on - strand, within AO353_03390 at 722.177 kb on - strand, within AO353_03390 at 722.177 kb on - strand, within AO353_03390 at 722.177 kb on - strand, within AO353_03390 at 722.177 kb on - strand, within AO353_03390 at 722.177 kb on - strand, within AO353_03390 at 722.177 kb on - strand, within AO353_03390 at 722.332 kb on + strand, within AO353_03390 at 722.332 kb on + strand, within AO353_03390 at 722.332 kb on + strand, within AO353_03390 at 722.332 kb on + strand, within AO353_03390 at 722.332 kb on + strand, within AO353_03390 at 722.333 kb on - strand, within AO353_03390 at 722.333 kb on - strand, within AO353_03390 at 722.333 kb on - strand, within AO353_03390 at 722.333 kb on - strand, within AO353_03390 at 722.333 kb on - strand, within AO353_03390 at 722.333 kb on - strand, within AO353_03390 at 722.333 kb on - strand, within AO353_03390 at 722.333 kb on - strand, within AO353_03390 at 722.356 kb on + strand, within AO353_03390 at 722.356 kb on + strand, within AO353_03390 at 722.356 kb on + strand, within AO353_03390 at 722.357 kb on - strand, within AO353_03390 at 722.357 kb on - strand, within AO353_03390 at 722.357 kb on - strand, within AO353_03390 at 722.357 kb on - strand, within AO353_03390 at 722.357 kb on - strand, within AO353_03390 at 722.357 kb on - strand, within AO353_03390 at 722.357 kb on - strand, within AO353_03390 at 722.410 kb on + strand, within AO353_03390 at 722.410 kb on + strand, within AO353_03390 at 722.410 kb on + strand, within AO353_03390 at 722.410 kb on + strand, within AO353_03390 at 722.410 kb on + strand, within AO353_03390 at 722.411 kb on - strand, within AO353_03390 at 722.411 kb on - strand, within AO353_03390 at 722.411 kb on - strand, within AO353_03390 at 722.416 kb on + strand, within AO353_03390 at 722.417 kb on - strand, within AO353_03390 at 722.417 kb on - strand, within AO353_03390 at 722.417 kb on - strand, within AO353_03390 at 722.574 kb on - strand at 722.574 kb on - strand at 722.574 kb on - strand at 722.649 kb on + strand at 723.033 kb on + strand, within AO353_03395 at 723.033 kb on + strand, within AO353_03395 at 723.033 kb on + strand, within AO353_03395 at 723.034 kb on - strand, within AO353_03395 at 723.075 kb on + strand, within AO353_03395 at 723.076 kb on - strand, within AO353_03395 at 723.076 kb on - strand, within AO353_03395 at 723.076 kb on - strand, within AO353_03395 at 723.213 kb on + strand, within AO353_03395 at 723.213 kb on + strand, within AO353_03395 at 723.213 kb on + strand, within AO353_03395 at 723.304 kb on - strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.543 kb on + strand, within AO353_03395 at 723.544 kb on - strand, within AO353_03395 at 723.716 kb on + strand, within AO353_03395 at 723.716 kb on + strand, within AO353_03395 at 723.717 kb on - strand, within AO353_03395 at 723.717 kb on - strand, within AO353_03395 at 723.717 kb on - strand, within AO353_03395 at 723.957 kb on + strand at 723.957 kb on + strand at 723.957 kb on + strand at 723.957 kb on + strand at 723.957 kb on + strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.963 kb on + strand at 723.963 kb on + strand at 723.963 kb on + strand at 723.963 kb on + strand at 723.964 kb on - strand at 723.964 kb on - strand at 723.978 kb on + strand at 723.978 kb on + strand at 723.978 kb on + strand at 723.978 kb on + strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 724.017 kb on - strand at 724.025 kb on + strand at 724.025 kb on + strand at 724.025 kb on + strand at 724.025 kb on + strand at 724.026 kb on - strand at 724.026 kb on - strand at 724.026 kb on - strand at 724.074 kb on + strand at 724.074 kb on + strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.082 kb on + strand at 724.082 kb on + strand at 724.083 kb on - strand at 724.083 kb on - strand at 724.302 kb on + strand, within AO353_03400 at 724.303 kb on - strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.587 kb on + strand, within AO353_03400 at 724.587 kb on + strand, within AO353_03400 at 724.588 kb on - strand, within AO353_03400 at 724.588 kb on - strand, within AO353_03400 at 724.623 kb on + strand, within AO353_03400 at 724.624 kb on - strand, within AO353_03400 at 724.837 kb on + strand, within AO353_03400 at 724.838 kb on - strand, within AO353_03400
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 721,648 + -0.3 721,649 - -2.3 721,649 - -0.0 721,655 - -0.4 721,655 - -0.0 721,655 - -0.2 721,744 + AO353_03390 0.14 -1.3 721,744 + AO353_03390 0.14 -1.2 721,744 + AO353_03390 0.14 -1.1 721,744 + AO353_03390 0.14 -2.0 721,744 + AO353_03390 0.14 +0.4 721,744 + AO353_03390 0.14 -1.9 721,744 + AO353_03390 0.14 -1.3 721,744 + AO353_03390 0.14 -2.9 721,744 + AO353_03390 0.14 -2.2 721,745 - AO353_03390 0.14 -1.9 721,745 - AO353_03390 0.14 -0.6 721,745 - AO353_03390 0.14 +0.8 721,745 - AO353_03390 0.14 -2.6 721,745 - AO353_03390 0.14 -1.1 721,745 - AO353_03390 0.14 -2.4 721,745 - AO353_03390 0.14 -1.5 721,745 - AO353_03390 0.14 -1.4 721,774 + AO353_03390 0.17 -0.8 721,775 - AO353_03390 0.17 -1.1 721,775 - AO353_03390 0.17 -1.0 721,894 + AO353_03390 0.30 -1.5 721,894 + AO353_03390 0.30 -0.7 721,894 + AO353_03390 0.30 -0.1 721,894 + AO353_03390 0.30 -2.5 721,894 + AO353_03390 0.30 -1.9 721,894 + AO353_03390 0.30 -0.9 721,894 + AO353_03390 0.30 +0.1 721,894 + AO353_03390 0.30 -0.1 722,026 + AO353_03390 0.45 -0.1 722,026 + AO353_03390 0.45 -0.1 722,027 - AO353_03390 0.45 -1.9 722,027 - AO353_03390 0.45 +0.2 722,176 + AO353_03390 0.61 -1.7 722,176 + AO353_03390 0.61 -1.8 722,176 + AO353_03390 0.61 -1.3 722,176 + AO353_03390 0.61 -0.6 722,176 + AO353_03390 0.61 -1.5 722,176 + AO353_03390 0.61 -0.9 722,176 + AO353_03390 0.61 -0.7 722,176 + AO353_03390 0.61 -0.7 722,176 + AO353_03390 0.61 -0.8 722,177 - AO353_03390 0.62 -0.8 722,177 - AO353_03390 0.62 -1.5 722,177 - AO353_03390 0.62 -1.2 722,177 - AO353_03390 0.62 -1.8 722,177 - AO353_03390 0.62 -2.0 722,177 - AO353_03390 0.62 -0.9 722,177 - AO353_03390 0.62 -2.2 722,177 - AO353_03390 0.62 -1.6 722,332 + AO353_03390 0.79 -0.1 722,332 + AO353_03390 0.79 -1.1 722,332 + AO353_03390 0.79 -1.3 722,332 + AO353_03390 0.79 -1.3 722,332 + AO353_03390 0.79 -0.4 722,333 - AO353_03390 0.79 +0.5 722,333 - AO353_03390 0.79 -0.6 722,333 - AO353_03390 0.79 -0.4 722,333 - AO353_03390 0.79 -0.5 722,333 - AO353_03390 0.79 -1.0 722,333 - AO353_03390 0.79 -3.1 722,333 - AO353_03390 0.79 -1.5 722,333 - AO353_03390 0.79 -1.1 722,356 + AO353_03390 0.81 -1.7 722,356 + AO353_03390 0.81 -1.8 722,356 + AO353_03390 0.81 -0.8 722,357 - AO353_03390 0.81 -0.6 722,357 - AO353_03390 0.81 -0.8 722,357 - AO353_03390 0.81 -0.9 722,357 - AO353_03390 0.81 -0.3 722,357 - AO353_03390 0.81 -1.1 722,357 - AO353_03390 0.81 -1.1 722,357 - AO353_03390 0.81 -0.3 722,410 + AO353_03390 0.87 -0.8 722,410 + AO353_03390 0.87 +0.2 722,410 + AO353_03390 0.87 -0.2 722,410 + AO353_03390 0.87 -2.4 722,410 + AO353_03390 0.87 -1.3 722,411 - AO353_03390 0.87 -0.2 722,411 - AO353_03390 0.87 -0.5 722,411 - AO353_03390 0.87 -1.6 722,416 + AO353_03390 0.88 -1.5 722,417 - AO353_03390 0.88 -1.4 722,417 - AO353_03390 0.88 -1.2 722,417 - AO353_03390 0.88 -1.0 722,574 - -1.1 722,574 - +0.4 722,574 - -1.1 722,649 + +1.1 723,033 + AO353_03395 0.29 -1.0 723,033 + AO353_03395 0.29 +0.1 723,033 + AO353_03395 0.29 -2.3 723,034 - AO353_03395 0.30 -0.4 723,075 + AO353_03395 0.33 -1.3 723,076 - AO353_03395 0.33 -1.4 723,076 - AO353_03395 0.33 +0.2 723,076 - AO353_03395 0.33 -0.4 723,213 + AO353_03395 0.43 -0.2 723,213 + AO353_03395 0.43 +0.2 723,213 + AO353_03395 0.43 -0.8 723,304 - AO353_03395 0.50 -1.2 723,423 + AO353_03395 0.59 -1.8 723,423 + AO353_03395 0.59 -0.9 723,423 + AO353_03395 0.59 -0.8 723,423 + AO353_03395 0.59 +0.2 723,423 + AO353_03395 0.59 -0.8 723,424 - AO353_03395 0.59 +0.6 723,424 - AO353_03395 0.59 -2.5 723,424 - AO353_03395 0.59 -1.5 723,424 - AO353_03395 0.59 -0.6 723,424 - AO353_03395 0.59 -1.3 723,424 - AO353_03395 0.59 -0.4 723,531 + AO353_03395 0.68 -1.4 723,531 + AO353_03395 0.68 +1.6 723,531 + AO353_03395 0.68 -1.9 723,531 + AO353_03395 0.68 -2.2 723,531 + AO353_03395 0.68 +1.6 723,532 - AO353_03395 0.68 +0.5 723,532 - AO353_03395 0.68 -0.9 723,532 - AO353_03395 0.68 -0.6 723,532 - AO353_03395 0.68 -1.9 723,532 - AO353_03395 0.68 -1.9 723,532 - AO353_03395 0.68 +1.1 723,543 + AO353_03395 0.68 -1.4 723,544 - AO353_03395 0.69 +0.6 723,716 + AO353_03395 0.82 -0.0 723,716 + AO353_03395 0.82 -1.4 723,717 - AO353_03395 0.82 -0.5 723,717 - AO353_03395 0.82 -1.3 723,717 - AO353_03395 0.82 +0.4 723,957 + +0.6 723,957 + +0.2 723,957 + -0.4 723,957 + -1.8 723,957 + -1.1 723,958 - -0.7 723,958 - -0.1 723,958 - -2.3 723,958 - -0.7 723,958 - -1.3 723,958 - +0.6 723,963 + -1.7 723,963 + -1.5 723,963 + -1.3 723,963 + -0.3 723,964 - +0.5 723,964 - +1.1 723,978 + -1.4 723,978 + -0.8 723,978 + -1.1 723,978 + -2.5 723,979 - -1.8 723,979 - -0.9 723,979 - -1.5 723,979 - +1.5 723,979 - -1.7 723,979 - +0.9 723,979 - -0.9 724,017 - -1.6 724,025 + +0.4 724,025 + +0.6 724,025 + -0.9 724,025 + -1.3 724,026 - +0.6 724,026 - -0.5 724,026 - -0.2 724,074 + -0.2 724,074 + -0.9 724,075 - +0.5 724,075 - -0.7 724,075 - -0.3 724,075 - -2.2 724,075 - +0.5 724,078 + -0.7 724,078 + -1.5 724,078 + +0.9 724,078 + -1.8 724,078 + -1.3 724,078 + -0.7 724,078 + +1.1 724,078 + -2.3 724,078 + -1.9 724,078 + -1.3 724,078 + +0.7 724,078 + +0.2 724,078 + +0.2 724,078 + -1.3 724,078 + -0.3 724,078 + -0.3 724,078 + -0.4 724,078 + -0.3 724,078 + -0.5 724,078 + -1.0 724,078 + -1.4 724,078 + -0.1 724,078 + +0.2 724,078 + +0.5 724,078 + -0.0 724,078 + -1.0 724,078 + +1.1 724,078 + -0.8 724,078 + -0.3 724,078 + -0.6 724,078 + -0.4 724,079 - +0.6 724,079 - -0.1 724,079 - +0.3 724,079 - -0.3 724,079 - -0.3 724,079 - -1.7 724,079 - +0.7 724,079 - -0.5 724,079 - -1.7 724,079 - +0.5 724,079 - +0.9 724,079 - -0.8 724,079 - -0.9 724,079 - +0.3 724,079 - +1.3 724,079 - +0.9 724,079 - +0.6 724,079 - -0.3 724,079 - +0.7 724,079 - +0.6 724,079 - -0.1 724,079 - +1.6 724,079 - -0.6 724,079 - -0.3 724,082 + -0.7 724,082 + -2.0 724,083 - +1.2 724,083 - +0.6 724,302 + AO353_03400 0.18 -2.2 724,303 - AO353_03400 0.18 -2.6 724,413 + AO353_03400 0.27 +0.5 724,413 + AO353_03400 0.27 -0.6 724,413 + AO353_03400 0.27 +0.2 724,413 + AO353_03400 0.27 -0.5 724,413 + AO353_03400 0.27 -0.1 724,414 - AO353_03400 0.27 -1.8 724,414 - AO353_03400 0.27 -0.1 724,414 - AO353_03400 0.27 +0.4 724,414 - AO353_03400 0.27 -0.3 724,414 - AO353_03400 0.27 -0.3 724,414 - AO353_03400 0.27 +0.4 724,414 - AO353_03400 0.27 -0.2 724,587 + AO353_03400 0.41 +1.1 724,587 + AO353_03400 0.41 -0.6 724,588 - AO353_03400 0.41 -0.1 724,588 - AO353_03400 0.41 +1.3 724,623 + AO353_03400 0.44 -1.6 724,624 - AO353_03400 0.44 +0.2 724,837 + AO353_03400 0.61 +0.4 724,838 - AO353_03400 0.61 -0.4
Or see this region's nucleotide sequence