Experiment: H2 deepwell autotrophic conditions
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02750 and MMP_RS02755 are separated by 101 nucleotides MMP_RS02755 and MMP_RS02760 are separated by 12 nucleotides
MMP_RS02750: MMP_RS02750 - HAD-IC family P-type ATPase, at 523,959 to 526,463
_RS02750
MMP_RS02755: MMP_RS02755 - ABC transporter permease, at 526,565 to 527,812
_RS02755
MMP_RS02760: MMP_RS02760 - COG1361 S-layer family protein, at 527,825 to 529,141
_RS02760
Position (kb) 526
527
528 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 525.764 kb on + strand, within MMP_RS02750 at 526.322 kb on - strand at 526.433 kb on + strand at 526.452 kb on + strand at 526.493 kb on + strand at 526.497 kb on - strand at 526.518 kb on - strand at 526.519 kb on + strand at 526.519 kb on + strand at 526.519 kb on + strand at 526.520 kb on - strand at 526.521 kb on + strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.667 kb on - strand at 526.736 kb on - strand, within MMP_RS02755 at 526.750 kb on - strand, within MMP_RS02755 at 526.751 kb on + strand, within MMP_RS02755 at 526.857 kb on + strand, within MMP_RS02755 at 526.892 kb on + strand, within MMP_RS02755 at 526.915 kb on - strand, within MMP_RS02755 at 527.462 kb on + strand, within MMP_RS02755 at 527.525 kb on - strand, within MMP_RS02755 at 527.535 kb on + strand, within MMP_RS02755 at 527.642 kb on - strand, within MMP_RS02755 at 527.642 kb on - strand, within MMP_RS02755 at 527.643 kb on + strand, within MMP_RS02755 at 527.643 kb on + strand, within MMP_RS02755 at 527.665 kb on - strand, within MMP_RS02755 at 527.697 kb on + strand at 527.762 kb on + strand at 527.771 kb on - strand at 527.789 kb on + strand at 527.817 kb on + strand at 527.882 kb on - strand at 527.883 kb on + strand at 528.041 kb on + strand, within MMP_RS02760 at 528.084 kb on + strand, within MMP_RS02760 at 528.113 kb on - strand, within MMP_RS02760 at 528.114 kb on + strand, within MMP_RS02760 at 528.114 kb on + strand, within MMP_RS02760 at 528.146 kb on + strand, within MMP_RS02760 at 528.153 kb on + strand, within MMP_RS02760 at 528.173 kb on + strand, within MMP_RS02760 at 528.208 kb on - strand, within MMP_RS02760 at 528.295 kb on - strand, within MMP_RS02760 at 528.301 kb on - strand, within MMP_RS02760 at 528.302 kb on + strand, within MMP_RS02760 at 528.302 kb on + strand, within MMP_RS02760 at 528.359 kb on - strand, within MMP_RS02760 at 528.401 kb on - strand, within MMP_RS02760 at 528.419 kb on - strand, within MMP_RS02760 at 528.420 kb on + strand, within MMP_RS02760 at 528.478 kb on + strand, within MMP_RS02760 at 528.481 kb on - strand, within MMP_RS02760 at 528.493 kb on - strand, within MMP_RS02760 at 528.625 kb on - strand, within MMP_RS02760 at 528.718 kb on - strand, within MMP_RS02760 at 528.759 kb on + strand, within MMP_RS02760
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell autotrophic conditions remove 525,764 + MMP_RS02750 0.72 -1.9 526,322 - -2.2 526,433 + +0.6 526,452 + -0.1 526,493 + +1.4 526,497 - -0.4 526,518 - -1.6 526,519 + +1.0 526,519 + -1.5 526,519 + +0.1 526,520 - -0.0 526,521 + +0.0 526,522 - -0.9 526,522 - +0.2 526,522 - +2.0 526,522 - +0.8 526,522 - -1.0 526,522 - +0.3 526,522 - -0.1 526,667 - +1.1 526,736 - MMP_RS02755 0.14 -0.9 526,750 - MMP_RS02755 0.15 +0.6 526,751 + MMP_RS02755 0.15 -1.2 526,857 + MMP_RS02755 0.23 +0.3 526,892 + MMP_RS02755 0.26 +0.9 526,915 - MMP_RS02755 0.28 +0.0 527,462 + MMP_RS02755 0.72 +0.4 527,525 - MMP_RS02755 0.77 -2.1 527,535 + MMP_RS02755 0.78 -1.0 527,642 - MMP_RS02755 0.86 -0.8 527,642 - MMP_RS02755 0.86 -0.3 527,643 + MMP_RS02755 0.86 -0.3 527,643 + MMP_RS02755 0.86 -0.8 527,665 - MMP_RS02755 0.88 +0.6 527,697 + -0.0 527,762 + -0.5 527,771 - +1.1 527,789 + -0.1 527,817 + +0.7 527,882 - +0.9 527,883 + +0.0 528,041 + MMP_RS02760 0.16 +0.4 528,084 + MMP_RS02760 0.20 +1.1 528,113 - MMP_RS02760 0.22 +0.1 528,114 + MMP_RS02760 0.22 +1.6 528,114 + MMP_RS02760 0.22 -0.8 528,146 + MMP_RS02760 0.24 -0.6 528,153 + MMP_RS02760 0.25 +0.5 528,173 + MMP_RS02760 0.26 -1.5 528,208 - MMP_RS02760 0.29 +0.9 528,295 - MMP_RS02760 0.36 +0.0 528,301 - MMP_RS02760 0.36 -0.1 528,302 + MMP_RS02760 0.36 -0.2 528,302 + MMP_RS02760 0.36 -0.2 528,359 - MMP_RS02760 0.41 +0.2 528,401 - MMP_RS02760 0.44 +0.4 528,419 - MMP_RS02760 0.45 +3.0 528,420 + MMP_RS02760 0.45 +0.4 528,478 + MMP_RS02760 0.50 +0.7 528,481 - MMP_RS02760 0.50 +0.8 528,493 - MMP_RS02760 0.51 +0.8 528,625 - MMP_RS02760 0.61 -0.0 528,718 - MMP_RS02760 0.68 -0.8 528,759 + MMP_RS02760 0.71 +1.2
Or see this region's nucleotide sequence