Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13610 and BWI76_RS13615 are separated by 26 nucleotides BWI76_RS13615 and BWI76_RS13620 are separated by 203 nucleotides
BWI76_RS13610: BWI76_RS13610 - sugar transporter, at 2,835,858 to 2,837,240
_RS13610
BWI76_RS13615: BWI76_RS13615 - sugar hydrolase, at 2,837,267 to 2,838,838
_RS13615
BWI76_RS13620: BWI76_RS13620 - positive regulator for rhaBAD operon, at 2,839,042 to 2,839,863
_RS13620
Position (kb)
2837
2838
2839 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2836.351 kb on - strand, within BWI76_RS13610 at 2836.576 kb on - strand, within BWI76_RS13610 at 2836.731 kb on - strand, within BWI76_RS13610 at 2838.041 kb on + strand, within BWI76_RS13615 at 2838.049 kb on - strand, within BWI76_RS13615 at 2838.267 kb on - strand, within BWI76_RS13615 at 2838.267 kb on - strand, within BWI76_RS13615 at 2838.367 kb on + strand, within BWI76_RS13615 at 2838.375 kb on - strand, within BWI76_RS13615 at 2838.377 kb on + strand, within BWI76_RS13615 at 2838.477 kb on + strand, within BWI76_RS13615 at 2838.624 kb on + strand, within BWI76_RS13615 at 2838.728 kb on + strand at 2838.801 kb on + strand at 2838.840 kb on - strand at 2838.853 kb on + strand at 2838.859 kb on - strand at 2838.868 kb on + strand at 2838.868 kb on + strand at 2838.868 kb on + strand at 2838.868 kb on + strand at 2838.876 kb on - strand at 2838.876 kb on - strand at 2838.876 kb on - strand at 2838.979 kb on - strand at 2838.979 kb on - strand at 2838.979 kb on - strand at 2838.979 kb on - strand at 2839.006 kb on - strand at 2839.017 kb on + strand at 2839.017 kb on - strand at 2839.025 kb on - strand at 2839.044 kb on - strand at 2839.080 kb on + strand at 2839.080 kb on + strand at 2839.092 kb on + strand at 2839.093 kb on - strand at 2839.094 kb on - strand at 2839.101 kb on - strand at 2839.101 kb on - strand at 2839.101 kb on - strand at 2839.111 kb on + strand at 2839.115 kb on - strand at 2839.115 kb on - strand at 2839.157 kb on + strand, within BWI76_RS13620 at 2839.160 kb on - strand, within BWI76_RS13620 at 2839.160 kb on - strand, within BWI76_RS13620 at 2839.160 kb on - strand, within BWI76_RS13620 at 2839.183 kb on - strand, within BWI76_RS13620 at 2839.183 kb on - strand, within BWI76_RS13620 at 2839.190 kb on - strand, within BWI76_RS13620 at 2839.205 kb on + strand, within BWI76_RS13620 at 2839.261 kb on - strand, within BWI76_RS13620 at 2839.261 kb on - strand, within BWI76_RS13620 at 2839.319 kb on + strand, within BWI76_RS13620 at 2839.347 kb on + strand, within BWI76_RS13620 at 2839.350 kb on - strand, within BWI76_RS13620 at 2839.399 kb on + strand, within BWI76_RS13620 at 2839.399 kb on + strand, within BWI76_RS13620 at 2839.399 kb on + strand, within BWI76_RS13620 at 2839.406 kb on + strand, within BWI76_RS13620 at 2839.407 kb on - strand, within BWI76_RS13620 at 2839.409 kb on + strand, within BWI76_RS13620 at 2839.414 kb on - strand, within BWI76_RS13620 at 2839.442 kb on + strand, within BWI76_RS13620 at 2839.442 kb on + strand, within BWI76_RS13620 at 2839.478 kb on - strand, within BWI76_RS13620 at 2839.533 kb on + strand, within BWI76_RS13620 at 2839.544 kb on + strand, within BWI76_RS13620 at 2839.554 kb on + strand, within BWI76_RS13620 at 2839.566 kb on + strand, within BWI76_RS13620 at 2839.566 kb on + strand, within BWI76_RS13620 at 2839.566 kb on + strand, within BWI76_RS13620 at 2839.566 kb on + strand, within BWI76_RS13620 at 2839.568 kb on + strand, within BWI76_RS13620 at 2839.574 kb on - strand, within BWI76_RS13620 at 2839.574 kb on - strand, within BWI76_RS13620 at 2839.576 kb on + strand, within BWI76_RS13620 at 2839.579 kb on - strand, within BWI76_RS13620 at 2839.579 kb on - strand, within BWI76_RS13620 at 2839.579 kb on - strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.594 kb on - strand, within BWI76_RS13620 at 2839.594 kb on - strand, within BWI76_RS13620 at 2839.594 kb on - strand, within BWI76_RS13620 at 2839.601 kb on + strand, within BWI76_RS13620 at 2839.609 kb on - strand, within BWI76_RS13620 at 2839.609 kb on - strand, within BWI76_RS13620 at 2839.681 kb on - strand, within BWI76_RS13620 at 2839.736 kb on + strand, within BWI76_RS13620 at 2839.751 kb on + strand, within BWI76_RS13620 at 2839.754 kb on - strand, within BWI76_RS13620 at 2839.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 2,836,351 - BWI76_RS13610 0.36 +0.3 2,836,576 - BWI76_RS13610 0.52 +0.1 2,836,731 - BWI76_RS13610 0.63 +0.2 2,838,041 + BWI76_RS13615 0.49 +0.4 2,838,049 - BWI76_RS13615 0.50 +0.1 2,838,267 - BWI76_RS13615 0.64 -0.7 2,838,267 - BWI76_RS13615 0.64 +0.2 2,838,367 + BWI76_RS13615 0.70 -0.2 2,838,375 - BWI76_RS13615 0.70 +0.2 2,838,377 + BWI76_RS13615 0.71 -0.5 2,838,477 + BWI76_RS13615 0.77 -0.1 2,838,624 + BWI76_RS13615 0.86 +1.1 2,838,728 + -2.4 2,838,801 + +0.2 2,838,840 - -0.9 2,838,853 + +0.5 2,838,859 - -0.1 2,838,868 + +0.4 2,838,868 + -0.8 2,838,868 + +0.9 2,838,868 + +0.5 2,838,876 - +0.3 2,838,876 - +1.6 2,838,876 - -0.1 2,838,979 - +0.9 2,838,979 - +0.4 2,838,979 - +0.3 2,838,979 - +0.3 2,839,006 - -0.4 2,839,017 + +0.2 2,839,017 - -1.5 2,839,025 - +0.6 2,839,044 - -0.8 2,839,080 + +0.7 2,839,080 + +0.1 2,839,092 + +0.4 2,839,093 - +0.2 2,839,094 - +0.4 2,839,101 - +1.0 2,839,101 - -0.6 2,839,101 - -0.3 2,839,111 + +1.3 2,839,115 - -0.2 2,839,115 - -0.7 2,839,157 + BWI76_RS13620 0.14 -0.4 2,839,160 - BWI76_RS13620 0.14 -1.2 2,839,160 - BWI76_RS13620 0.14 -0.2 2,839,160 - BWI76_RS13620 0.14 +0.8 2,839,183 - BWI76_RS13620 0.17 +0.4 2,839,183 - BWI76_RS13620 0.17 -0.4 2,839,190 - BWI76_RS13620 0.18 -1.0 2,839,205 + BWI76_RS13620 0.20 -0.2 2,839,261 - BWI76_RS13620 0.27 +0.4 2,839,261 - BWI76_RS13620 0.27 +1.3 2,839,319 + BWI76_RS13620 0.34 -0.6 2,839,347 + BWI76_RS13620 0.37 +0.1 2,839,350 - BWI76_RS13620 0.37 -0.2 2,839,399 + BWI76_RS13620 0.43 +2.2 2,839,399 + BWI76_RS13620 0.43 +0.5 2,839,399 + BWI76_RS13620 0.43 -0.7 2,839,406 + BWI76_RS13620 0.44 +0.4 2,839,407 - BWI76_RS13620 0.44 -0.7 2,839,409 + BWI76_RS13620 0.45 -0.9 2,839,414 - BWI76_RS13620 0.45 +0.4 2,839,442 + BWI76_RS13620 0.49 +0.7 2,839,442 + BWI76_RS13620 0.49 -0.9 2,839,478 - BWI76_RS13620 0.53 +0.8 2,839,533 + BWI76_RS13620 0.60 -0.2 2,839,544 + BWI76_RS13620 0.61 -0.6 2,839,554 + BWI76_RS13620 0.62 -0.2 2,839,566 + BWI76_RS13620 0.64 +0.0 2,839,566 + BWI76_RS13620 0.64 +1.1 2,839,566 + BWI76_RS13620 0.64 -0.4 2,839,566 + BWI76_RS13620 0.64 +0.3 2,839,568 + BWI76_RS13620 0.64 -0.3 2,839,574 - BWI76_RS13620 0.65 +0.2 2,839,574 - BWI76_RS13620 0.65 -0.3 2,839,576 + BWI76_RS13620 0.65 +0.8 2,839,579 - BWI76_RS13620 0.65 -2.4 2,839,579 - BWI76_RS13620 0.65 -0.2 2,839,579 - BWI76_RS13620 0.65 -0.6 2,839,586 + BWI76_RS13620 0.66 -0.1 2,839,586 + BWI76_RS13620 0.66 -0.1 2,839,586 + BWI76_RS13620 0.66 +0.5 2,839,586 + BWI76_RS13620 0.66 +0.3 2,839,586 + BWI76_RS13620 0.66 +0.2 2,839,594 - BWI76_RS13620 0.67 -0.3 2,839,594 - BWI76_RS13620 0.67 -1.1 2,839,594 - BWI76_RS13620 0.67 +0.2 2,839,601 + BWI76_RS13620 0.68 +1.4 2,839,609 - BWI76_RS13620 0.69 +0.6 2,839,609 - BWI76_RS13620 0.69 -0.3 2,839,681 - BWI76_RS13620 0.78 +0.0 2,839,736 + BWI76_RS13620 0.84 -0.3 2,839,751 + BWI76_RS13620 0.86 +0.1 2,839,754 - BWI76_RS13620 0.87 +0.0 2,839,827 + -0.4
Or see this region's nucleotide sequence