Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13615

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13610 and BWI76_RS13615 are separated by 26 nucleotidesBWI76_RS13615 and BWI76_RS13620 are separated by 203 nucleotides BWI76_RS13610: BWI76_RS13610 - sugar transporter, at 2,835,858 to 2,837,240 _RS13610 BWI76_RS13615: BWI76_RS13615 - sugar hydrolase, at 2,837,267 to 2,838,838 _RS13615 BWI76_RS13620: BWI76_RS13620 - positive regulator for rhaBAD operon, at 2,839,042 to 2,839,863 _RS13620 Position (kb) 2837 2838 2839Strain fitness (log2 ratio) -2 -1 0 1 2at 2836.351 kb on - strand, within BWI76_RS13610at 2836.576 kb on - strand, within BWI76_RS13610at 2836.731 kb on - strand, within BWI76_RS13610at 2838.041 kb on + strand, within BWI76_RS13615at 2838.049 kb on - strand, within BWI76_RS13615at 2838.267 kb on - strand, within BWI76_RS13615at 2838.267 kb on - strand, within BWI76_RS13615at 2838.367 kb on + strand, within BWI76_RS13615at 2838.375 kb on - strand, within BWI76_RS13615at 2838.377 kb on + strand, within BWI76_RS13615at 2838.477 kb on + strand, within BWI76_RS13615at 2838.624 kb on + strand, within BWI76_RS13615at 2838.728 kb on + strandat 2838.801 kb on + strandat 2838.840 kb on - strandat 2838.853 kb on + strandat 2838.859 kb on - strandat 2838.868 kb on + strandat 2838.868 kb on + strandat 2838.868 kb on + strandat 2838.868 kb on + strandat 2838.876 kb on - strandat 2838.876 kb on - strandat 2838.876 kb on - strandat 2838.979 kb on - strandat 2838.979 kb on - strandat 2838.979 kb on - strandat 2838.979 kb on - strandat 2839.006 kb on - strandat 2839.017 kb on + strandat 2839.017 kb on - strandat 2839.025 kb on - strandat 2839.044 kb on - strandat 2839.080 kb on + strandat 2839.080 kb on + strandat 2839.092 kb on + strandat 2839.093 kb on - strandat 2839.094 kb on - strandat 2839.101 kb on - strandat 2839.101 kb on - strandat 2839.101 kb on - strandat 2839.111 kb on + strandat 2839.115 kb on - strandat 2839.115 kb on - strandat 2839.157 kb on + strand, within BWI76_RS13620at 2839.160 kb on - strand, within BWI76_RS13620at 2839.160 kb on - strand, within BWI76_RS13620at 2839.160 kb on - strand, within BWI76_RS13620at 2839.183 kb on - strand, within BWI76_RS13620at 2839.183 kb on - strand, within BWI76_RS13620at 2839.190 kb on - strand, within BWI76_RS13620at 2839.205 kb on + strand, within BWI76_RS13620at 2839.261 kb on - strand, within BWI76_RS13620at 2839.261 kb on - strand, within BWI76_RS13620at 2839.319 kb on + strand, within BWI76_RS13620at 2839.347 kb on + strand, within BWI76_RS13620at 2839.350 kb on - strand, within BWI76_RS13620at 2839.399 kb on + strand, within BWI76_RS13620at 2839.399 kb on + strand, within BWI76_RS13620at 2839.399 kb on + strand, within BWI76_RS13620at 2839.406 kb on + strand, within BWI76_RS13620at 2839.407 kb on - strand, within BWI76_RS13620at 2839.409 kb on + strand, within BWI76_RS13620at 2839.414 kb on - strand, within BWI76_RS13620at 2839.442 kb on + strand, within BWI76_RS13620at 2839.442 kb on + strand, within BWI76_RS13620at 2839.478 kb on - strand, within BWI76_RS13620at 2839.533 kb on + strand, within BWI76_RS13620at 2839.544 kb on + strand, within BWI76_RS13620at 2839.554 kb on + strand, within BWI76_RS13620at 2839.566 kb on + strand, within BWI76_RS13620at 2839.566 kb on + strand, within BWI76_RS13620at 2839.566 kb on + strand, within BWI76_RS13620at 2839.566 kb on + strand, within BWI76_RS13620at 2839.568 kb on + strand, within BWI76_RS13620at 2839.574 kb on - strand, within BWI76_RS13620at 2839.574 kb on - strand, within BWI76_RS13620at 2839.576 kb on + strand, within BWI76_RS13620at 2839.579 kb on - strand, within BWI76_RS13620at 2839.579 kb on - strand, within BWI76_RS13620at 2839.579 kb on - strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.594 kb on - strand, within BWI76_RS13620at 2839.594 kb on - strand, within BWI76_RS13620at 2839.594 kb on - strand, within BWI76_RS13620at 2839.601 kb on + strand, within BWI76_RS13620at 2839.609 kb on - strand, within BWI76_RS13620at 2839.609 kb on - strand, within BWI76_RS13620at 2839.681 kb on - strand, within BWI76_RS13620at 2839.736 kb on + strand, within BWI76_RS13620at 2839.751 kb on + strand, within BWI76_RS13620at 2839.754 kb on - strand, within BWI76_RS13620at 2839.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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2,836,351 - BWI76_RS13610 0.36 +0.3
2,836,576 - BWI76_RS13610 0.52 +0.1
2,836,731 - BWI76_RS13610 0.63 +0.2
2,838,041 + BWI76_RS13615 0.49 +0.4
2,838,049 - BWI76_RS13615 0.50 +0.1
2,838,267 - BWI76_RS13615 0.64 -0.7
2,838,267 - BWI76_RS13615 0.64 +0.2
2,838,367 + BWI76_RS13615 0.70 -0.2
2,838,375 - BWI76_RS13615 0.70 +0.2
2,838,377 + BWI76_RS13615 0.71 -0.5
2,838,477 + BWI76_RS13615 0.77 -0.1
2,838,624 + BWI76_RS13615 0.86 +1.1
2,838,728 + -2.4
2,838,801 + +0.2
2,838,840 - -0.9
2,838,853 + +0.5
2,838,859 - -0.1
2,838,868 + +0.4
2,838,868 + -0.8
2,838,868 + +0.9
2,838,868 + +0.5
2,838,876 - +0.3
2,838,876 - +1.6
2,838,876 - -0.1
2,838,979 - +0.9
2,838,979 - +0.4
2,838,979 - +0.3
2,838,979 - +0.3
2,839,006 - -0.4
2,839,017 + +0.2
2,839,017 - -1.5
2,839,025 - +0.6
2,839,044 - -0.8
2,839,080 + +0.7
2,839,080 + +0.1
2,839,092 + +0.4
2,839,093 - +0.2
2,839,094 - +0.4
2,839,101 - +1.0
2,839,101 - -0.6
2,839,101 - -0.3
2,839,111 + +1.3
2,839,115 - -0.2
2,839,115 - -0.7
2,839,157 + BWI76_RS13620 0.14 -0.4
2,839,160 - BWI76_RS13620 0.14 -1.2
2,839,160 - BWI76_RS13620 0.14 -0.2
2,839,160 - BWI76_RS13620 0.14 +0.8
2,839,183 - BWI76_RS13620 0.17 +0.4
2,839,183 - BWI76_RS13620 0.17 -0.4
2,839,190 - BWI76_RS13620 0.18 -1.0
2,839,205 + BWI76_RS13620 0.20 -0.2
2,839,261 - BWI76_RS13620 0.27 +0.4
2,839,261 - BWI76_RS13620 0.27 +1.3
2,839,319 + BWI76_RS13620 0.34 -0.6
2,839,347 + BWI76_RS13620 0.37 +0.1
2,839,350 - BWI76_RS13620 0.37 -0.2
2,839,399 + BWI76_RS13620 0.43 +2.2
2,839,399 + BWI76_RS13620 0.43 +0.5
2,839,399 + BWI76_RS13620 0.43 -0.7
2,839,406 + BWI76_RS13620 0.44 +0.4
2,839,407 - BWI76_RS13620 0.44 -0.7
2,839,409 + BWI76_RS13620 0.45 -0.9
2,839,414 - BWI76_RS13620 0.45 +0.4
2,839,442 + BWI76_RS13620 0.49 +0.7
2,839,442 + BWI76_RS13620 0.49 -0.9
2,839,478 - BWI76_RS13620 0.53 +0.8
2,839,533 + BWI76_RS13620 0.60 -0.2
2,839,544 + BWI76_RS13620 0.61 -0.6
2,839,554 + BWI76_RS13620 0.62 -0.2
2,839,566 + BWI76_RS13620 0.64 +0.0
2,839,566 + BWI76_RS13620 0.64 +1.1
2,839,566 + BWI76_RS13620 0.64 -0.4
2,839,566 + BWI76_RS13620 0.64 +0.3
2,839,568 + BWI76_RS13620 0.64 -0.3
2,839,574 - BWI76_RS13620 0.65 +0.2
2,839,574 - BWI76_RS13620 0.65 -0.3
2,839,576 + BWI76_RS13620 0.65 +0.8
2,839,579 - BWI76_RS13620 0.65 -2.4
2,839,579 - BWI76_RS13620 0.65 -0.2
2,839,579 - BWI76_RS13620 0.65 -0.6
2,839,586 + BWI76_RS13620 0.66 -0.1
2,839,586 + BWI76_RS13620 0.66 -0.1
2,839,586 + BWI76_RS13620 0.66 +0.5
2,839,586 + BWI76_RS13620 0.66 +0.3
2,839,586 + BWI76_RS13620 0.66 +0.2
2,839,594 - BWI76_RS13620 0.67 -0.3
2,839,594 - BWI76_RS13620 0.67 -1.1
2,839,594 - BWI76_RS13620 0.67 +0.2
2,839,601 + BWI76_RS13620 0.68 +1.4
2,839,609 - BWI76_RS13620 0.69 +0.6
2,839,609 - BWI76_RS13620 0.69 -0.3
2,839,681 - BWI76_RS13620 0.78 +0.0
2,839,736 + BWI76_RS13620 0.84 -0.3
2,839,751 + BWI76_RS13620 0.86 +0.1
2,839,754 - BWI76_RS13620 0.87 +0.0
2,839,827 + -0.4

Or see this region's nucleotide sequence