Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00680

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00675 and BWI76_RS00680 overlap by 4 nucleotidesBWI76_RS00680 and BWI76_RS00685 are separated by 159 nucleotidesBWI76_RS00685 and BWI76_RS00690 are separated by 50 nucleotides BWI76_RS00675: BWI76_RS00675 - L-rhamnose isomerase (EC 5.3.1.14) (from data), at 137,946 to 139,205 _RS00675 BWI76_RS00680: BWI76_RS00680 - Rhamnulokinase (EC 2.7.1.5) (from data), at 139,202 to 140,668 _RS00680 BWI76_RS00685: BWI76_RS00685 - ABC transporter ATP-binding protein, at 140,828 to 140,929 _RS00685 BWI76_RS00690: BWI76_RS00690 - transcriptional activator RhaS, at 140,980 to 141,816 _RS00690 Position (kb) 139 140 141Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 138.211 kb on + strand, within BWI76_RS00675at 138.225 kb on - strand, within BWI76_RS00675at 138.375 kb on - strand, within BWI76_RS00675at 138.501 kb on - strand, within BWI76_RS00675at 138.501 kb on - strand, within BWI76_RS00675at 138.530 kb on + strand, within BWI76_RS00675at 138.543 kb on - strand, within BWI76_RS00675at 138.543 kb on - strand, within BWI76_RS00675at 138.563 kb on - strand, within BWI76_RS00675at 138.715 kb on + strand, within BWI76_RS00675at 138.723 kb on - strand, within BWI76_RS00675at 138.738 kb on - strand, within BWI76_RS00675at 138.757 kb on + strand, within BWI76_RS00675at 138.767 kb on + strand, within BWI76_RS00675at 138.767 kb on + strandat 138.775 kb on - strand, within BWI76_RS00675at 138.775 kb on - strand, within BWI76_RS00675at 138.775 kb on - strand, within BWI76_RS00675at 138.821 kb on + strand, within BWI76_RS00675at 138.973 kb on - strand, within BWI76_RS00675at 138.973 kb on - strand, within BWI76_RS00675at 138.998 kb on - strand, within BWI76_RS00675at 139.031 kb on - strand, within BWI76_RS00675at 139.130 kb on - strandat 139.186 kb on + strandat 139.228 kb on - strandat 139.238 kb on - strandat 139.276 kb on + strandat 139.385 kb on + strand, within BWI76_RS00680at 139.436 kb on - strand, within BWI76_RS00680at 139.438 kb on + strand, within BWI76_RS00680at 139.530 kb on + strand, within BWI76_RS00680at 139.540 kb on + strand, within BWI76_RS00680at 139.565 kb on + strand, within BWI76_RS00680at 139.836 kb on - strand, within BWI76_RS00680at 140.084 kb on + strand, within BWI76_RS00680at 140.181 kb on - strand, within BWI76_RS00680at 140.190 kb on - strand, within BWI76_RS00680at 140.233 kb on + strand, within BWI76_RS00680at 140.315 kb on + strand, within BWI76_RS00680at 140.575 kb on + strandat 140.575 kb on + strandat 140.582 kb on + strandat 140.583 kb on - strandat 140.708 kb on - strandat 140.777 kb on + strandat 140.785 kb on - strandat 140.985 kb on - strandat 140.985 kb on - strandat 140.986 kb on + strandat 140.986 kb on + strandat 140.986 kb on + strandat 140.986 kb on + strandat 141.138 kb on + strand, within BWI76_RS00690at 141.138 kb on + strand, within BWI76_RS00690at 141.138 kb on + strand, within BWI76_RS00690at 141.226 kb on + strand, within BWI76_RS00690at 141.328 kb on + strand, within BWI76_RS00690at 141.368 kb on + strand, within BWI76_RS00690at 141.369 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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138,211 + BWI76_RS00675 0.21 -2.5
138,225 - BWI76_RS00675 0.22 -3.4
138,375 - BWI76_RS00675 0.34 -2.7
138,501 - BWI76_RS00675 0.44 -1.8
138,501 - BWI76_RS00675 0.44 -3.1
138,530 + BWI76_RS00675 0.46 -2.9
138,543 - BWI76_RS00675 0.47 -3.5
138,543 - BWI76_RS00675 0.47 -3.4
138,563 - BWI76_RS00675 0.49 +0.6
138,715 + BWI76_RS00675 0.61 -4.4
138,723 - BWI76_RS00675 0.62 +0.3
138,738 - BWI76_RS00675 0.63 -2.7
138,757 + BWI76_RS00675 0.64 -2.4
138,767 + BWI76_RS00675 0.65 -3.1
138,767 + +1.6
138,775 - BWI76_RS00675 0.66 -2.6
138,775 - BWI76_RS00675 0.66 -2.7
138,775 - BWI76_RS00675 0.66 -2.7
138,821 + BWI76_RS00675 0.69 -3.7
138,973 - BWI76_RS00675 0.82 -0.4
138,973 - BWI76_RS00675 0.82 -1.8
138,998 - BWI76_RS00675 0.83 -1.3
139,031 - BWI76_RS00675 0.86 -3.5
139,130 - -2.5
139,186 + -1.3
139,228 - -2.0
139,238 - -0.6
139,276 + -2.0
139,385 + BWI76_RS00680 0.12 +2.6
139,436 - BWI76_RS00680 0.16 -1.6
139,438 + BWI76_RS00680 0.16 -1.3
139,530 + BWI76_RS00680 0.22 -2.1
139,540 + BWI76_RS00680 0.23 -3.2
139,565 + BWI76_RS00680 0.25 -1.4
139,836 - BWI76_RS00680 0.43 -2.9
140,084 + BWI76_RS00680 0.60 -2.9
140,181 - BWI76_RS00680 0.67 -3.7
140,190 - BWI76_RS00680 0.67 -4.1
140,233 + BWI76_RS00680 0.70 -2.9
140,315 + BWI76_RS00680 0.76 -0.7
140,575 + -2.9
140,575 + -1.6
140,582 + -1.7
140,583 - -2.6
140,708 - -2.5
140,777 + -1.7
140,785 - -1.1
140,985 - -0.7
140,985 - -0.8
140,986 + -1.8
140,986 + -2.3
140,986 + -2.1
140,986 + -0.4
141,138 + BWI76_RS00690 0.19 -2.1
141,138 + BWI76_RS00690 0.19 -1.6
141,138 + BWI76_RS00690 0.19 -0.2
141,226 + BWI76_RS00690 0.29 -2.1
141,328 + BWI76_RS00690 0.42 -1.9
141,368 + BWI76_RS00690 0.46 -2.6
141,369 + +0.0

Or see this region's nucleotide sequence