Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06235

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06230 and AO353_06235 are separated by 0 nucleotidesAO353_06235 and AO353_06240 are separated by 148 nucleotidesAO353_06240 and AO353_06245 overlap by 4 nucleotides AO353_06230: AO353_06230 - metallopeptidase, at 1,390,319 to 1,391,227 _06230 AO353_06235: AO353_06235 - hypothetical protein, at 1,391,228 to 1,392,193 _06235 AO353_06240: AO353_06240 - HAD family hydrolase, at 1,392,342 to 1,392,935 _06240 AO353_06245: AO353_06245 - palmitoyl-CoA hydrolase, at 1,392,932 to 1,393,801 _06245 Position (kb) 1391 1392 1393Strain fitness (log2 ratio) -2 -1 0 1 2at 1390.234 kb on + strandat 1390.243 kb on + strandat 1390.243 kb on + strandat 1390.243 kb on + strandat 1390.244 kb on - strandat 1390.301 kb on + strandat 1390.302 kb on - strandat 1390.323 kb on + strandat 1390.324 kb on - strandat 1390.324 kb on - strandat 1390.324 kb on - strandat 1390.324 kb on - strandat 1390.667 kb on + strand, within AO353_06230at 1390.667 kb on + strand, within AO353_06230at 1390.668 kb on - strand, within AO353_06230at 1390.668 kb on - strand, within AO353_06230at 1390.668 kb on - strand, within AO353_06230at 1390.748 kb on + strand, within AO353_06230at 1390.748 kb on + strand, within AO353_06230at 1390.748 kb on + strand, within AO353_06230at 1390.749 kb on - strand, within AO353_06230at 1390.749 kb on - strand, within AO353_06230at 1390.772 kb on + strand, within AO353_06230at 1390.772 kb on + strand, within AO353_06230at 1390.772 kb on + strand, within AO353_06230at 1390.773 kb on - strand, within AO353_06230at 1390.773 kb on - strand, within AO353_06230at 1390.773 kb on - strand, within AO353_06230at 1390.773 kb on - strand, within AO353_06230at 1390.773 kb on - strand, within AO353_06230at 1390.773 kb on - strand, within AO353_06230at 1390.773 kb on - strand, within AO353_06230at 1390.841 kb on + strand, within AO353_06230at 1390.841 kb on + strand, within AO353_06230at 1390.841 kb on + strand, within AO353_06230at 1390.841 kb on + strand, within AO353_06230at 1390.841 kb on + strand, within AO353_06230at 1390.842 kb on - strand, within AO353_06230at 1390.842 kb on - strand, within AO353_06230at 1390.842 kb on - strand, within AO353_06230at 1390.842 kb on - strand, within AO353_06230at 1390.842 kb on - strand, within AO353_06230at 1390.842 kb on - strand, within AO353_06230at 1390.842 kb on - strand, within AO353_06230at 1390.842 kb on - strand, within AO353_06230at 1390.842 kb on - strand, within AO353_06230at 1390.890 kb on + strand, within AO353_06230at 1390.890 kb on + strand, within AO353_06230at 1391.138 kb on - strandat 1391.225 kb on + strandat 1391.225 kb on + strandat 1391.225 kb on + strandat 1391.226 kb on - strandat 1391.226 kb on - strandat 1391.263 kb on - strandat 1391.358 kb on + strand, within AO353_06235at 1391.358 kb on + strand, within AO353_06235at 1391.358 kb on + strand, within AO353_06235at 1391.358 kb on + strand, within AO353_06235at 1391.358 kb on + strand, within AO353_06235at 1391.358 kb on + strand, within AO353_06235at 1391.359 kb on - strand, within AO353_06235at 1391.359 kb on - strand, within AO353_06235at 1391.359 kb on - strand, within AO353_06235at 1391.359 kb on - strand, within AO353_06235at 1391.359 kb on - strand, within AO353_06235at 1391.359 kb on - strand, within AO353_06235at 1391.388 kb on + strand, within AO353_06235at 1391.388 kb on + strand, within AO353_06235at 1391.388 kb on + strand, within AO353_06235at 1391.388 kb on + strand, within AO353_06235at 1391.388 kb on + strand, within AO353_06235at 1391.389 kb on - strand, within AO353_06235at 1391.389 kb on - strand, within AO353_06235at 1391.389 kb on - strand, within AO353_06235at 1391.389 kb on - strand, within AO353_06235at 1391.389 kb on - strand, within AO353_06235at 1391.389 kb on - strand, within AO353_06235at 1391.491 kb on - strand, within AO353_06235at 1391.615 kb on + strand, within AO353_06235at 1391.615 kb on + strand, within AO353_06235at 1391.615 kb on + strand, within AO353_06235at 1391.616 kb on - strand, within AO353_06235at 1391.616 kb on - strand, within AO353_06235at 1391.726 kb on + strand, within AO353_06235at 1391.726 kb on + strand, within AO353_06235at 1391.726 kb on + strand, within AO353_06235at 1391.727 kb on - strand, within AO353_06235at 1391.783 kb on + strand, within AO353_06235at 1391.783 kb on + strand, within AO353_06235at 1391.784 kb on - strand, within AO353_06235at 1391.784 kb on - strand, within AO353_06235at 1391.807 kb on + strand, within AO353_06235at 1391.807 kb on + strand, within AO353_06235at 1391.808 kb on - strand, within AO353_06235at 1391.808 kb on - strand, within AO353_06235at 1391.808 kb on - strand, within AO353_06235at 1391.813 kb on + strand, within AO353_06235at 1391.813 kb on + strand, within AO353_06235at 1391.813 kb on + strand, within AO353_06235at 1391.813 kb on + strand, within AO353_06235at 1391.813 kb on + strand, within AO353_06235at 1391.814 kb on - strand, within AO353_06235at 1391.814 kb on - strand, within AO353_06235at 1391.879 kb on + strand, within AO353_06235at 1391.879 kb on + strand, within AO353_06235at 1391.879 kb on + strand, within AO353_06235at 1391.942 kb on + strand, within AO353_06235at 1391.942 kb on + strand, within AO353_06235at 1391.942 kb on + strand, within AO353_06235at 1391.942 kb on + strand, within AO353_06235at 1391.942 kb on + strand, within AO353_06235at 1391.942 kb on + strand, within AO353_06235at 1391.943 kb on - strand, within AO353_06235at 1391.943 kb on - strand, within AO353_06235at 1391.943 kb on - strand, within AO353_06235at 1391.963 kb on + strand, within AO353_06235at 1391.963 kb on + strand, within AO353_06235at 1391.963 kb on + strand, within AO353_06235at 1391.963 kb on + strand, within AO353_06235at 1391.963 kb on + strand, within AO353_06235at 1391.963 kb on + strand, within AO353_06235at 1391.964 kb on - strand, within AO353_06235at 1391.964 kb on - strand, within AO353_06235at 1391.964 kb on - strand, within AO353_06235at 1391.964 kb on - strand, within AO353_06235at 1391.964 kb on - strand, within AO353_06235at 1391.964 kb on - strand, within AO353_06235at 1391.964 kb on - strand, within AO353_06235at 1392.066 kb on - strand, within AO353_06235at 1392.066 kb on - strand, within AO353_06235at 1392.066 kb on - strand, within AO353_06235at 1392.066 kb on - strand, within AO353_06235at 1392.066 kb on - strand, within AO353_06235at 1392.066 kb on - strand, within AO353_06235at 1392.074 kb on + strand, within AO353_06235at 1392.074 kb on + strand, within AO353_06235at 1392.074 kb on + strand, within AO353_06235at 1392.075 kb on - strand, within AO353_06235at 1392.075 kb on - strand, within AO353_06235at 1392.075 kb on - strand, within AO353_06235at 1392.286 kb on + strandat 1392.286 kb on + strandat 1392.286 kb on + strandat 1392.286 kb on + strandat 1392.286 kb on + strandat 1392.286 kb on + strandat 1392.286 kb on + strandat 1392.286 kb on + strandat 1392.287 kb on - strandat 1392.287 kb on - strandat 1392.287 kb on - strandat 1392.305 kb on + strandat 1392.422 kb on + strand, within AO353_06240at 1392.422 kb on + strand, within AO353_06240at 1392.422 kb on + strand, within AO353_06240at 1392.423 kb on - strand, within AO353_06240at 1392.423 kb on - strand, within AO353_06240at 1392.423 kb on - strand, within AO353_06240at 1392.423 kb on - strand, within AO353_06240at 1392.426 kb on + strand, within AO353_06240at 1392.426 kb on + strand, within AO353_06240at 1392.426 kb on + strand, within AO353_06240at 1392.427 kb on - strand, within AO353_06240at 1392.427 kb on - strand, within AO353_06240at 1392.427 kb on - strand, within AO353_06240at 1392.427 kb on - strand, within AO353_06240at 1392.510 kb on + strand, within AO353_06240at 1392.510 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.582 kb on + strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1392.583 kb on - strand, within AO353_06240at 1393.062 kb on + strand, within AO353_06245at 1393.063 kb on - strand, within AO353_06245at 1393.063 kb on - strand, within AO353_06245

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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1,390,234 + +0.2
1,390,243 + +0.4
1,390,243 + +0.3
1,390,243 + -1.5
1,390,244 - -1.2
1,390,301 + -0.6
1,390,302 - -0.5
1,390,323 + -1.0
1,390,324 - -0.6
1,390,324 - -0.9
1,390,324 - -0.2
1,390,324 - +0.2
1,390,667 + AO353_06230 0.38 +0.5
1,390,667 + AO353_06230 0.38 +1.2
1,390,668 - AO353_06230 0.38 -0.3
1,390,668 - AO353_06230 0.38 +0.5
1,390,668 - AO353_06230 0.38 +0.3
1,390,748 + AO353_06230 0.47 +0.6
1,390,748 + AO353_06230 0.47 -0.4
1,390,748 + AO353_06230 0.47 +0.3
1,390,749 - AO353_06230 0.47 +0.6
1,390,749 - AO353_06230 0.47 +0.6
1,390,772 + AO353_06230 0.50 -1.0
1,390,772 + AO353_06230 0.50 -1.2
1,390,772 + AO353_06230 0.50 +1.5
1,390,773 - AO353_06230 0.50 +0.3
1,390,773 - AO353_06230 0.50 -0.9
1,390,773 - AO353_06230 0.50 +0.3
1,390,773 - AO353_06230 0.50 +0.6
1,390,773 - AO353_06230 0.50 -2.0
1,390,773 - AO353_06230 0.50 -1.0
1,390,773 - AO353_06230 0.50 +0.4
1,390,841 + AO353_06230 0.57 +1.3
1,390,841 + AO353_06230 0.57 +0.8
1,390,841 + AO353_06230 0.57 +1.3
1,390,841 + AO353_06230 0.57 -0.6
1,390,841 + AO353_06230 0.57 +0.2
1,390,842 - AO353_06230 0.58 +0.0
1,390,842 - AO353_06230 0.58 -0.4
1,390,842 - AO353_06230 0.58 +0.0
1,390,842 - AO353_06230 0.58 -0.5
1,390,842 - AO353_06230 0.58 -0.2
1,390,842 - AO353_06230 0.58 -0.6
1,390,842 - AO353_06230 0.58 -0.3
1,390,842 - AO353_06230 0.58 -0.8
1,390,842 - AO353_06230 0.58 -2.4
1,390,890 + AO353_06230 0.63 +1.0
1,390,890 + AO353_06230 0.63 +0.7
1,391,138 - +0.1
1,391,225 + +0.0
1,391,225 + +0.6
1,391,225 + -1.7
1,391,226 - -1.4
1,391,226 - -1.1
1,391,263 - +0.5
1,391,358 + AO353_06235 0.13 -0.1
1,391,358 + AO353_06235 0.13 -0.5
1,391,358 + AO353_06235 0.13 +0.1
1,391,358 + AO353_06235 0.13 +1.9
1,391,358 + AO353_06235 0.13 +0.0
1,391,358 + AO353_06235 0.13 -0.8
1,391,359 - AO353_06235 0.14 +0.7
1,391,359 - AO353_06235 0.14 -0.8
1,391,359 - AO353_06235 0.14 +0.6
1,391,359 - AO353_06235 0.14 +0.6
1,391,359 - AO353_06235 0.14 +0.5
1,391,359 - AO353_06235 0.14 -0.1
1,391,388 + AO353_06235 0.17 -0.4
1,391,388 + AO353_06235 0.17 -0.3
1,391,388 + AO353_06235 0.17 +0.3
1,391,388 + AO353_06235 0.17 -1.3
1,391,388 + AO353_06235 0.17 +0.2
1,391,389 - AO353_06235 0.17 +0.2
1,391,389 - AO353_06235 0.17 -0.9
1,391,389 - AO353_06235 0.17 +1.0
1,391,389 - AO353_06235 0.17 +0.8
1,391,389 - AO353_06235 0.17 +0.0
1,391,389 - AO353_06235 0.17 +0.2
1,391,491 - AO353_06235 0.27 +1.3
1,391,615 + AO353_06235 0.40 +1.0
1,391,615 + AO353_06235 0.40 -1.0
1,391,615 + AO353_06235 0.40 -0.1
1,391,616 - AO353_06235 0.40 -1.5
1,391,616 - AO353_06235 0.40 +2.2
1,391,726 + AO353_06235 0.52 -2.3
1,391,726 + AO353_06235 0.52 -0.1
1,391,726 + AO353_06235 0.52 +0.0
1,391,727 - AO353_06235 0.52 -0.6
1,391,783 + AO353_06235 0.57 +2.0
1,391,783 + AO353_06235 0.57 +0.6
1,391,784 - AO353_06235 0.58 +1.0
1,391,784 - AO353_06235 0.58 +0.1
1,391,807 + AO353_06235 0.60 +0.8
1,391,807 + AO353_06235 0.60 +1.1
1,391,808 - AO353_06235 0.60 +0.2
1,391,808 - AO353_06235 0.60 -1.5
1,391,808 - AO353_06235 0.60 +0.5
1,391,813 + AO353_06235 0.61 +0.1
1,391,813 + AO353_06235 0.61 -0.0
1,391,813 + AO353_06235 0.61 +0.3
1,391,813 + AO353_06235 0.61 -1.1
1,391,813 + AO353_06235 0.61 +1.1
1,391,814 - AO353_06235 0.61 +1.9
1,391,814 - AO353_06235 0.61 +2.5
1,391,879 + AO353_06235 0.67 -1.1
1,391,879 + AO353_06235 0.67 +0.7
1,391,879 + AO353_06235 0.67 +0.6
1,391,942 + AO353_06235 0.74 -0.9
1,391,942 + AO353_06235 0.74 +0.3
1,391,942 + AO353_06235 0.74 +0.6
1,391,942 + AO353_06235 0.74 +1.1
1,391,942 + AO353_06235 0.74 +2.0
1,391,942 + AO353_06235 0.74 -0.3
1,391,943 - AO353_06235 0.74 +0.1
1,391,943 - AO353_06235 0.74 +1.7
1,391,943 - AO353_06235 0.74 +0.9
1,391,963 + AO353_06235 0.76 +0.2
1,391,963 + AO353_06235 0.76 -1.7
1,391,963 + AO353_06235 0.76 +0.6
1,391,963 + AO353_06235 0.76 -1.1
1,391,963 + AO353_06235 0.76 +0.3
1,391,963 + AO353_06235 0.76 +0.6
1,391,964 - AO353_06235 0.76 -0.5
1,391,964 - AO353_06235 0.76 -0.6
1,391,964 - AO353_06235 0.76 +0.2
1,391,964 - AO353_06235 0.76 -0.8
1,391,964 - AO353_06235 0.76 -0.2
1,391,964 - AO353_06235 0.76 -0.3
1,391,964 - AO353_06235 0.76 -0.2
1,392,066 - AO353_06235 0.87 +0.5
1,392,066 - AO353_06235 0.87 -0.3
1,392,066 - AO353_06235 0.87 -0.5
1,392,066 - AO353_06235 0.87 -0.7
1,392,066 - AO353_06235 0.87 -1.4
1,392,066 - AO353_06235 0.87 +0.3
1,392,074 + AO353_06235 0.88 +0.6
1,392,074 + AO353_06235 0.88 +0.8
1,392,074 + AO353_06235 0.88 +0.3
1,392,075 - AO353_06235 0.88 +1.5
1,392,075 - AO353_06235 0.88 +0.4
1,392,075 - AO353_06235 0.88 -0.7
1,392,286 + +1.7
1,392,286 + +1.3
1,392,286 + -0.4
1,392,286 + -1.0
1,392,286 + +0.2
1,392,286 + +0.0
1,392,286 + +1.3
1,392,286 + -0.9
1,392,287 - +1.3
1,392,287 - -1.1
1,392,287 - +0.2
1,392,305 + +0.6
1,392,422 + AO353_06240 0.13 +1.0
1,392,422 + AO353_06240 0.13 -1.1
1,392,422 + AO353_06240 0.13 +0.5
1,392,423 - AO353_06240 0.14 +0.7
1,392,423 - AO353_06240 0.14 -0.4
1,392,423 - AO353_06240 0.14 +0.5
1,392,423 - AO353_06240 0.14 -0.2
1,392,426 + AO353_06240 0.14 -0.6
1,392,426 + AO353_06240 0.14 -0.1
1,392,426 + AO353_06240 0.14 +1.2
1,392,427 - AO353_06240 0.14 -1.2
1,392,427 - AO353_06240 0.14 +0.0
1,392,427 - AO353_06240 0.14 -1.7
1,392,427 - AO353_06240 0.14 -0.5
1,392,510 + AO353_06240 0.28 -0.7
1,392,510 + AO353_06240 0.28 +0.9
1,392,582 + AO353_06240 0.40 +0.9
1,392,582 + AO353_06240 0.40 -1.7
1,392,582 + AO353_06240 0.40 +0.5
1,392,582 + AO353_06240 0.40 -0.4
1,392,582 + AO353_06240 0.40 -1.6
1,392,582 + AO353_06240 0.40 +0.3
1,392,582 + AO353_06240 0.40 +0.2
1,392,582 + AO353_06240 0.40 -0.6
1,392,582 + AO353_06240 0.40 +0.0
1,392,582 + AO353_06240 0.40 -1.0
1,392,582 + AO353_06240 0.40 +0.5
1,392,582 + AO353_06240 0.40 +0.0
1,392,583 - AO353_06240 0.41 +0.3
1,392,583 - AO353_06240 0.41 +0.1
1,392,583 - AO353_06240 0.41 -0.4
1,392,583 - AO353_06240 0.41 -1.7
1,392,583 - AO353_06240 0.41 +0.0
1,392,583 - AO353_06240 0.41 +0.1
1,392,583 - AO353_06240 0.41 +0.9
1,392,583 - AO353_06240 0.41 -0.6
1,392,583 - AO353_06240 0.41 -0.0
1,392,583 - AO353_06240 0.41 +0.5
1,393,062 + AO353_06245 0.15 -0.0
1,393,063 - AO353_06245 0.15 +0.2
1,393,063 - AO353_06245 0.15 +0.4

Or see this region's nucleotide sequence