Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001535

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,712,002	+				+3.8
1,712,024	+				+1.3
1,712,024	+				+1.6
1,712,025	-				-1.1
1,712,025	-				+0.3
1,712,069	-				-1.3
1,712,069	-				-0.4
1,712,069	-				-0.0
1,712,155	+				-3.0
1,712,155	+				-0.0
1,712,155	+				-0.6
1,712,155	+				-0.2
1,712,155	+				+1.2
1,712,155	+				-0.6
1,712,156	-				+2.1
1,712,156	-				-1.9
1,712,159	+				-1.8
1,712,160	-				+0.4
1,712,324	+				-1.8
1,712,325	-				+0.5
1,712,356	+				+2.3
1,712,399	+				+0.8
1,712,399	+				+0.2
1,712,399	+				-0.4
1,712,399	+				-0.4
1,712,400	-				-2.8
1,712,526	+		ABIE53_001534	0.18	-1.4
1,712,526	+		ABIE53_001534	0.18	+1.2
1,713,024	+				-0.1
1,713,057	+				-2.8
1,713,058	-				-0.6
1,713,099	+		ABIE53_001535	0.11	+1.0
1,713,100	-		ABIE53_001535	0.11	-0.7
1,713,179	+		ABIE53_001535	0.17	-2.3
1,713,179	+		ABIE53_001535	0.17	+0.2
1,713,179	+		ABIE53_001535	0.17	+1.2
1,713,180	-		ABIE53_001535	0.17	-0.3
1,713,180	-		ABIE53_001535	0.17	+0.2
1,713,249	+		ABIE53_001535	0.23	+0.2
1,713,249	+		ABIE53_001535	0.23	+1.4
1,713,343	+		ABIE53_001535	0.30	-0.2
1,713,343	+		ABIE53_001535	0.30	-0.8
1,713,343	+		ABIE53_001535	0.30	-0.4
1,713,343	+		ABIE53_001535	0.30	+1.4
1,713,343	+		ABIE53_001535	0.30	+2.8
1,713,343	+		ABIE53_001535	0.30	-1.2
1,713,343	+		ABIE53_001535	0.30	+1.2
1,713,343	+		ABIE53_001535	0.30	-3.8
1,713,343	+		ABIE53_001535	0.30	+2.8
1,713,343	+		ABIE53_001535	0.30	-1.1
1,713,343	+		ABIE53_001535	0.30	-1.7
1,713,343	+		ABIE53_001535	0.30	-0.4
1,713,343	+		ABIE53_001535	0.30	-1.1
1,713,344	-		ABIE53_001535	0.30	-1.0
1,713,344	-		ABIE53_001535	0.30	-2.1
1,713,344	-		ABIE53_001535	0.30	-0.4
1,713,344	-		ABIE53_001535	0.30	-0.9
1,713,344	-		ABIE53_001535	0.30	-1.1
1,713,344	-		ABIE53_001535	0.30	-2.0
1,713,344	-		ABIE53_001535	0.30	-1.4
1,713,344	-		ABIE53_001535	0.30	-1.6
1,713,344	-		ABIE53_001535	0.30	+0.4
1,713,344	-		ABIE53_001535	0.30	+0.3
1,713,346	-		ABIE53_001535	0.30	+0.2
1,713,346	-		ABIE53_001535	0.30	+2.1
1,713,346	-		ABIE53_001535	0.30	+1.2
1,713,346	-		ABIE53_001535	0.30	-0.2
1,713,409	-		ABIE53_001535	0.35	+1.2
1,713,409	-		ABIE53_001535	0.35	+1.1
1,713,409	-		ABIE53_001535	0.35	-2.1
1,713,409	-		ABIE53_001535	0.35	-1.6
1,713,490	-		ABIE53_001535	0.41	-0.2
1,713,529	+		ABIE53_001535	0.44	-1.0
1,713,530	-		ABIE53_001535	0.44	-0.5
1,713,549	+		ABIE53_001535	0.46	-1.1
1,713,549	+		ABIE53_001535	0.46	+1.3
1,713,612	+		ABIE53_001535	0.51	-0.0
1,713,612	+		ABIE53_001535	0.51	+0.2
1,713,612	+		ABIE53_001535	0.51	+3.2
1,713,612	+		ABIE53_001535	0.51	+0.3
1,713,613	-		ABIE53_001535	0.51	+1.0
1,713,613	-		ABIE53_001535	0.51	-0.0
1,713,613	-		ABIE53_001535	0.51	+0.2
1,713,738	-		ABIE53_001535	0.61	+0.6
1,713,981	+		ABIE53_001535	0.79	-1.1
1,714,041	+		ABIE53_001535	0.84	+3.2
1,714,074	+		ABIE53_001535	0.87	-0.4
1,714,074	+		ABIE53_001535	0.87	-1.6
1,714,074	+		ABIE53_001535	0.87	+2.2
1,714,074	+		ABIE53_001535	0.87	+0.2
1,714,075	-		ABIE53_001535	0.87	-0.4
1,714,075	-		ABIE53_001535	0.87	-0.6
1,714,075	-		ABIE53_001535	0.87	-0.3
1,714,146	+				+1.2
1,714,146	+				-2.3
1,714,146	+				-0.8
1,714,146	+				-2.1
1,714,146	+				+0.5
1,714,146	+				+1.2
1,714,146	+				+0.6
1,714,146	+				+1.2
1,714,147	-				-1.1
1,714,147	-				-1.1
1,714,147	-				-0.2
1,714,147	-				+1.2
1,714,147	-				+0.4
1,714,147	-				-1.4
1,714,147	-				+0.2
1,714,147	-				+2.7
1,714,192	+				+0.5
1,714,192	+				-0.4
1,714,192	+				-1.9
1,714,192	+				-2.6
1,714,192	+				-1.6
1,714,192	+				-2.3
1,714,192	+				+0.2
1,714,192	+				+1.7
1,714,192	+				-1.4
1,714,192	+				-0.8
1,714,193	-				-1.6
1,714,193	-				+1.2
1,714,193	-				-0.9
1,714,193	-				-0.8
1,714,193	-				+0.2
1,714,193	-				-1.1
1,714,193	-				-0.5
1,714,193	-				-0.7
1,714,193	-				+2.2
1,714,193	-				-0.4
1,714,193	-				+1.8
1,714,194	+				-2.3
1,714,238	+				+1.7
1,714,238	+				+0.4
1,714,304	-				+0.9
1,714,328	-				-1.3
1,714,328	-				+1.2
1,714,349	+				+1.2
1,714,364	-				-1.4
1,714,364	-				-2.8
1,714,414	+				+0.7
1,714,415	-				-1.2
1,714,415	-				-0.8
1,714,564	+		ABIE53_001536	0.19	+3.5
1,714,564	+		ABIE53_001536	0.19	-1.6
1,714,564	+		ABIE53_001536	0.19	-1.5
1,714,564	+		ABIE53_001536	0.19	+0.3
1,714,861	+		ABIE53_001536	0.42	+2.8
1,714,862	-		ABIE53_001536	0.42	+0.6
1,714,864	+		ABIE53_001536	0.42	-0.4
1,714,865	-		ABIE53_001536	0.42	-0.8
1,714,865	-		ABIE53_001536	0.42	+1.3
1,714,986	+		ABIE53_001536	0.52	+0.9
1,714,986	+		ABIE53_001536	0.52	-0.5
1,714,986	+		ABIE53_001536	0.52	+0.2
1,714,986	+		ABIE53_001536	0.52	-1.1
1,714,986	+		ABIE53_001536	0.52	-1.8
1,714,986	+		ABIE53_001536	0.52	+1.6
1,714,987	-		ABIE53_001536	0.52	-1.4
1,714,987	-		ABIE53_001536	0.52	-2.0
1,714,987	-		ABIE53_001536	0.52	-0.1
1,714,987	-		ABIE53_001536	0.52	+0.2
1,714,987	-		ABIE53_001536	0.52	+1.2
1,714,987	-		ABIE53_001536	0.52	+0.2
1,715,041	+		ABIE53_001536	0.56	-1.1
1,715,042	-		ABIE53_001536	0.56	-2.6
1,715,042	-		ABIE53_001536	0.56	-1.8
1,715,116	+		ABIE53_001536	0.62	-0.4
1,715,117	-		ABIE53_001536	0.62	-0.4
1,715,123	+		ABIE53_001536	0.63	-1.6
1,715,155	+		ABIE53_001536	0.65	-2.0
1,715,155	+		ABIE53_001536	0.65	-1.6
1,715,156	-		ABIE53_001536	0.65	-1.7
1,715,156	-		ABIE53_001536	0.65	-0.4
1,715,156	-		ABIE53_001536	0.65	+0.7
1,715,156	-		ABIE53_001536	0.65	-1.1