Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001438

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,607,392	+		ABIE53_001437	0.78	+1.2
1,607,393	-		ABIE53_001437	0.78	+1.0
1,607,393	-		ABIE53_001437	0.78	-0.8
1,607,602	+				+1.2
1,607,708	+				+0.8
1,607,708	+				+0.7
1,607,708	+				-1.3
1,607,708	+				+2.2
1,607,708	+				-0.9
1,607,708	+				-1.0
1,607,708	+				+2.0
1,607,708	+				-1.4
1,607,708	+				-0.2
1,607,708	+				+1.1
1,607,709	-				-1.6
1,607,709	-				-1.4
1,607,709	-				-0.6
1,607,709	-				-1.4
1,607,709	-				-0.4
1,607,709	-				-0.2
1,607,790	+				+0.8
1,607,813	+				+0.5
1,607,930	+				-2.0
1,607,930	+				-1.3
1,607,930	+				+1.7
1,607,930	+				+1.6
1,607,930	+				-0.1
1,607,931	-				+0.0
1,607,931	-				-1.4
1,608,040	+				+6.9
1,608,040	+				-2.1
1,608,041	-				-0.2
1,608,045	+				+1.2
1,608,201	-				-1.4
1,608,304	+				+1.7
1,608,304	+				+1.8
1,608,305	-				-1.8
1,608,541	+		ABIE53_001438	0.22	+0.2
1,608,541	+		ABIE53_001438	0.22	-1.7
1,608,541	+		ABIE53_001438	0.22	-0.1
1,608,542	-		ABIE53_001438	0.22	-2.8
1,608,850	+		ABIE53_001438	0.43	-2.6
1,608,850	+		ABIE53_001438	0.43	+0.7
1,608,850	+		ABIE53_001438	0.43	-0.8
1,608,850	+		ABIE53_001438	0.43	-1.0
1,608,850	+		ABIE53_001438	0.43	+3.0
1,608,850	+		ABIE53_001438	0.43	-0.8
1,608,850	+		ABIE53_001438	0.43	-0.4
1,608,850	+		ABIE53_001438	0.43	-1.6
1,608,850	+		ABIE53_001438	0.43	+1.8
1,608,850	+		ABIE53_001438	0.43	-1.4
1,608,850	+		ABIE53_001438	0.43	+0.1
1,608,851	-		ABIE53_001438	0.43	+0.2
1,608,851	-		ABIE53_001438	0.43	-0.5
1,608,851	-		ABIE53_001438	0.43	+0.3
1,608,851	-		ABIE53_001438	0.43	-0.8
1,608,851	-		ABIE53_001438	0.43	-1.0
1,608,851	-		ABIE53_001438	0.43	-2.0
1,608,851	-		ABIE53_001438	0.43	+1.8
1,608,851	-		ABIE53_001438	0.43	-0.7
1,608,922	+		ABIE53_001438	0.48	-0.8
1,608,922	+		ABIE53_001438	0.48	-0.1
1,608,922	+		ABIE53_001438	0.48	-1.1
1,608,922	+		ABIE53_001438	0.48	-2.0
1,608,922	+		ABIE53_001438	0.48	+0.4
1,608,923	-		ABIE53_001438	0.48	-3.7
1,608,923	-		ABIE53_001438	0.48	-1.0
1,608,923	-		ABIE53_001438	0.48	-0.6
1,608,923	-		ABIE53_001438	0.48	-1.4
1,609,101	+		ABIE53_001438	0.60	-1.1
1,609,101	+		ABIE53_001438	0.60	+0.8
1,609,101	+		ABIE53_001438	0.60	+1.2
1,609,102	-		ABIE53_001438	0.60	-1.7
1,609,102	-		ABIE53_001438	0.60	-0.8
1,609,102	-		ABIE53_001438	0.60	+0.8
1,609,102	-		ABIE53_001438	0.60	+0.2
1,609,208	+		ABIE53_001438	0.67	-0.4
1,609,234	+		ABIE53_001438	0.69	-0.5
1,609,234	+		ABIE53_001438	0.69	-0.9
1,609,234	+		ABIE53_001438	0.69	+0.8
1,609,234	+		ABIE53_001438	0.69	-0.8
1,609,234	+		ABIE53_001438	0.69	+0.4
1,609,234	+		ABIE53_001438	0.69	+1.6
1,609,234	+		ABIE53_001438	0.69	-0.4
1,609,235	-		ABIE53_001438	0.69	-0.4
1,609,235	-		ABIE53_001438	0.69	-1.2
1,609,235	-		ABIE53_001438	0.69	-1.2
1,609,235	-		ABIE53_001438	0.69	+0.2
1,609,235	-		ABIE53_001438	0.69	-1.8
1,609,235	-		ABIE53_001438	0.69	-1.6
1,609,235	-		ABIE53_001438	0.69	-2.0
1,609,235	-		ABIE53_001438	0.69	+0.7
1,609,235	-		ABIE53_001438	0.69	+0.0
1,609,235	-		ABIE53_001438	0.69	-2.3
1,609,235	-		ABIE53_001438	0.69	+0.6
1,609,246	-		ABIE53_001438	0.70	+0.3
1,609,501	+		ABIE53_001438	0.87	-1.4
1,609,502	-		ABIE53_001438	0.87	-2.3
1,609,502	-		ABIE53_001438	0.87	-0.8
1,609,502	-		ABIE53_001438	0.87	+0.2
1,609,502	-		ABIE53_001438	0.87	+1.1
1,609,558	+				-1.4
1,609,559	-				+4.4
1,609,559	-				-2.3
1,609,693	+				+0.7
1,609,693	+				+0.2
1,609,694	-				+0.6
1,609,694	-				-2.0
1,609,799	+				+3.2
1,609,799	+				+0.7
1,609,799	+				-0.3
1,609,799	+				+1.2
1,609,799	+				+1.8
1,609,800	-				-0.5
1,609,800	-				+0.8
1,609,800	-				+2.6
1,609,800	-				+3.9
1,609,803	+				+1.9
1,609,804	-				-2.9
1,609,804	-				+0.5
1,609,826	+				+1.2
1,609,826	+				-0.4
1,609,826	+				+0.6
1,609,826	+				-0.7
1,609,827	-				+0.5
1,609,827	-				+0.0
1,609,827	-				-2.5
1,609,827	-				-0.0
1,609,827	-				+0.3
1,609,877	+				+2.2
1,609,959	+		ABIE53_001439	0.15	-0.4
1,610,047	+		ABIE53_001439	0.24	-0.8
1,610,047	+		ABIE53_001439	0.24	-4.1
1,610,047	+		ABIE53_001439	0.24	+1.4
1,610,047	+		ABIE53_001439	0.24	-3.0
1,610,047	+		ABIE53_001439	0.24	-1.5
1,610,047	+		ABIE53_001439	0.24	-1.0
1,610,048	-		ABIE53_001439	0.24	+3.8
1,610,048	-		ABIE53_001439	0.24	+2.4
1,610,048	-		ABIE53_001439	0.24	-0.4
1,610,048	-		ABIE53_001439	0.24	+0.6
1,610,048	-		ABIE53_001439	0.24	+1.2
1,610,048	-		ABIE53_001439	0.24	-0.8
1,610,048	-		ABIE53_001439	0.24	+1.2
1,610,058	-		ABIE53_001439	0.26	-0.3
1,610,093	+		ABIE53_001439	0.29	+1.2
1,610,094	-		ABIE53_001439	0.30	-0.1
1,610,187	-		ABIE53_001439	0.40	-1.4
1,610,187	-		ABIE53_001439	0.40	+0.4
1,610,187	-		ABIE53_001439	0.40	-0.0
1,610,367	-		ABIE53_001439	0.60	-0.7
1,610,428	-		ABIE53_001439	0.67	+1.2
1,610,483	+		ABIE53_001439	0.73	-3.3
1,610,598	+		ABIE53_001439	0.86	-0.7
1,610,598	+		ABIE53_001439	0.86	+0.2
1,610,598	+		ABIE53_001439	0.86	-0.8
1,610,598	+		ABIE53_001439	0.86	+1.2
1,610,598	+		ABIE53_001439	0.86	-0.4
1,610,599	-		ABIE53_001439	0.86	+2.6
1,610,599	-		ABIE53_001439	0.86	+0.5
1,610,599	-		ABIE53_001439	0.86	-1.5
1,610,599	-		ABIE53_001439	0.86	+1.3
1,610,599	-		ABIE53_001439	0.86	-1.6
1,610,599	-		ABIE53_001439	0.86	-1.4