Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001026

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,126,857	-		ABIE53_001025	0.49	+1.4
1,126,857	-		ABIE53_001025	0.49	+4.1
1,126,871	+		ABIE53_001025	0.50	+0.8
1,126,872	-		ABIE53_001025	0.50	-2.1
1,126,872	-		ABIE53_001025	0.50	-3.1
1,126,940	+		ABIE53_001025	0.55	-1.7
1,126,940	+		ABIE53_001025	0.55	+0.4
1,126,941	-		ABIE53_001025	0.55	+0.7
1,126,941	-		ABIE53_001025	0.55	-0.6
1,127,140	+		ABIE53_001025	0.70	-1.3
1,127,140	+		ABIE53_001025	0.70	-1.3
1,127,141	-		ABIE53_001025	0.70	+1.3
1,127,141	-		ABIE53_001025	0.70	+2.1
1,127,191	+		ABIE53_001025	0.73	-1.3
1,127,192	-		ABIE53_001025	0.73	-2.0
1,127,218	+		ABIE53_001025	0.75	-0.4
1,127,218	+		ABIE53_001025	0.75	+0.2
1,127,218	+		ABIE53_001025	0.75	-1.6
1,127,219	-		ABIE53_001025	0.75	+0.6
1,127,219	-		ABIE53_001025	0.75	-0.5
1,127,219	-		ABIE53_001025	0.75	+1.3
1,127,219	-		ABIE53_001025	0.75	-0.6
1,127,219	-		ABIE53_001025	0.75	+0.3
1,127,219	-		ABIE53_001025	0.75	+0.3
1,127,219	-		ABIE53_001025	0.75	+1.3
1,127,221	+		ABIE53_001025	0.75	-1.1
1,127,221	+		ABIE53_001025	0.75	+0.5
1,127,221	+		ABIE53_001025	0.75	+0.5
1,127,221	+		ABIE53_001025	0.75	+0.8
1,127,221	+		ABIE53_001025	0.75	-2.7
1,127,221	+		ABIE53_001025	0.75	+1.0
1,127,222	-		ABIE53_001025	0.75	-1.9
1,127,222	-		ABIE53_001025	0.75	-2.2
1,127,222	-		ABIE53_001025	0.75	+0.3
1,127,222	-		ABIE53_001025	0.75	-1.3
1,127,222	-		ABIE53_001025	0.75	-1.2
1,127,225	+		ABIE53_001025	0.76	-0.7
1,127,225	+		ABIE53_001025	0.76	-0.7
1,127,226	-		ABIE53_001025	0.76	-1.3
1,127,283	+		ABIE53_001025	0.80	-1.8
1,127,283	+		ABIE53_001025	0.80	+0.1
1,127,284	-		ABIE53_001025	0.80	+0.8
1,127,284	-		ABIE53_001025	0.80	+2.3
1,127,365	+		ABIE53_001025	0.86	-0.3
1,127,365	+		ABIE53_001025	0.86	-0.7
1,127,365	+		ABIE53_001025	0.86	-1.1
1,127,366	-		ABIE53_001025	0.86	-2.4
1,127,384	+		ABIE53_001025	0.87	-0.6
1,127,384	+		ABIE53_001025	0.87	-1.3
1,127,385	-		ABIE53_001025	0.87	+0.3
1,127,434	+				+1.6
1,127,434	+				+1.5
1,127,434	+				-1.1
1,127,435	-				-1.7
1,127,561	-				-0.7
1,127,641	+				-2.7
1,127,641	+				+3.1
1,127,642	-				+0.4
1,127,642	-				+1.4
1,127,642	-				-2.6
1,127,659	+				+0.6
1,127,659	+				-1.7
1,127,659	+				-0.6
1,127,660	-				+0.2
1,127,760	+		ABIE53_001026	0.24	+0.8
1,127,788	+		ABIE53_001026	0.30	-0.2
1,127,789	-		ABIE53_001026	0.30	+0.4
1,127,794	+		ABIE53_001026	0.31	+2.5
1,127,794	+		ABIE53_001026	0.31	-0.1
1,127,918	+		ABIE53_001026	0.57	-1.6
1,127,918	+		ABIE53_001026	0.57	-1.9
1,127,918	+		ABIE53_001026	0.57	-0.2
1,127,918	+		ABIE53_001026	0.57	+3.0
1,127,919	-		ABIE53_001026	0.57	-2.4
1,127,958	+		ABIE53_001026	0.65	-0.3
1,127,958	+		ABIE53_001026	0.65	+1.3
1,127,959	-		ABIE53_001026	0.66	+0.7
1,127,959	-		ABIE53_001026	0.66	-0.6
1,128,046	+		ABIE53_001026	0.84	-2.8
1,128,046	+		ABIE53_001026	0.84	+0.4
1,128,052	+		ABIE53_001026	0.85	-0.7
1,128,052	+		ABIE53_001026	0.85	+0.1
1,128,052	+		ABIE53_001026	0.85	-1.2
1,128,052	+		ABIE53_001026	0.85	-2.2
1,128,052	+		ABIE53_001026	0.85	+4.6
1,128,053	-		ABIE53_001026	0.85	-0.9
1,128,053	-		ABIE53_001026	0.85	-0.6
1,128,081	-				-0.0
1,128,081	-				-1.9
1,128,106	+				+2.3
1,128,107	-				-1.7
1,128,107	-				-1.3
1,128,114	+				+1.3
1,128,114	+				+0.9
1,128,114	+				+0.8
1,128,115	-				+0.1
1,128,115	-				-2.1
1,128,115	-				+0.8
1,128,115	-				+1.3
1,128,184	+				-1.6
1,128,184	+				+0.3
1,128,184	+				+0.8
1,128,185	-				+1.4
1,128,185	-				+2.8
1,128,185	-				+0.9
1,128,203	+				+1.3
1,128,203	+				-0.4
1,128,204	-				+0.5
1,128,204	-				+0.3
1,128,204	-				+0.3
1,128,204	-				-1.1
1,128,204	-				-0.1
1,128,204	-				+0.3
1,128,204	-				-1.3
1,128,204	-				-1.1
1,128,253	+				+0.8
1,128,259	-				-1.3
1,128,420	-				+3.1
1,128,423	+				-0.6
1,128,423	+				+0.6
1,128,423	+				+1.0
1,128,424	-				+0.8
1,128,453	+				+0.1
1,128,453	+				-0.3
1,128,454	-				+0.4
1,128,477	+				-0.3
1,128,477	+				-0.3
1,128,477	+				-2.2
1,128,477	+				+0.2
1,128,496	+				+0.7
1,128,496	+				+0.8
1,128,496	+				+0.3
1,128,496	+				+2.3
1,128,496	+				+0.8
1,128,497	-				-1.3
1,128,497	-				-0.2
1,128,553	+				-0.7
1,128,554	-				-0.3
1,128,569	+				-1.4
1,128,569	+				-2.4
1,128,569	+				-0.9
1,128,570	-				-1.1
1,128,578	+				+0.3
1,128,578	+				+0.8
1,128,578	+				-1.1
1,128,579	-				-0.7
1,128,591	+				-0.3
1,128,789	+		ABIE53_001027	0.14	-2.2
1,128,789	+		ABIE53_001027	0.14	-1.1
1,128,790	-		ABIE53_001027	0.14	-1.6
1,128,790	-		ABIE53_001027	0.14	-0.6
1,128,867	+		ABIE53_001027	0.21	-0.9
1,128,868	-		ABIE53_001027	0.21	+0.5
1,128,868	-		ABIE53_001027	0.21	-1.7
1,128,878	+		ABIE53_001027	0.22	+0.5
1,128,879	-		ABIE53_001027	0.22	-0.7
1,128,895	+		ABIE53_001027	0.23	-1.9
1,128,895	+		ABIE53_001027	0.23	+0.3
1,128,896	-		ABIE53_001027	0.23	-1.3
1,128,896	-		ABIE53_001027	0.23	+0.3
1,128,909	+		ABIE53_001027	0.25	-0.3
1,128,910	-		ABIE53_001027	0.25	+2.8