Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03795

Experiment: H2 deepwell acetate and casamino FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03780 and MMP_RS03785 are separated by 17 nucleotidesMMP_RS03785 and MMP_RS03790 are separated by 139 nucleotidesMMP_RS03790 and MMP_RS03795 are separated by 7 nucleotidesMMP_RS03795 and MMP_RS03800 are separated by 352 nucleotidesMMP_RS03800 and MMP_RS03805 are separated by 35 nucleotides MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381 _RS03780 MMP_RS03785: MMP_RS03785 - cupin domain-containing protein, at 715,399 to 715,743 _RS03785 MMP_RS03790: MMP_RS03790 - hypothetical protein, at 715,883 to 716,317 _RS03790 MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882 _RS03795 MMP_RS03800: MMP_RS03800 - hypothetical protein, at 717,235 to 717,468 _RS03800 MMP_RS03805: MMP_RS03805 - excinuclease ABC subunit UvrB, at 717,504 to 719,444 _RS03805 Position (kb) 716 717Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 715.341 kb on - strandat 715.367 kb on - strandat 715.461 kb on - strand, within MMP_RS03785at 715.573 kb on + strand, within MMP_RS03785at 715.614 kb on - strand, within MMP_RS03785at 715.735 kb on + strandat 715.780 kb on - strandat 715.794 kb on - strandat 715.798 kb on - strandat 715.798 kb on - strandat 715.798 kb on - strandat 715.821 kb on - strandat 715.822 kb on + strandat 715.822 kb on + strandat 715.822 kb on + strandat 715.822 kb on + strandat 715.824 kb on + strandat 715.870 kb on - strandat 715.892 kb on - strandat 715.893 kb on + strandat 716.093 kb on - strand, within MMP_RS03790at 716.114 kb on - strand, within MMP_RS03790at 716.140 kb on + strand, within MMP_RS03790at 716.140 kb on - strand, within MMP_RS03790at 716.140 kb on - strand, within MMP_RS03790at 716.141 kb on + strand, within MMP_RS03790at 716.142 kb on - strand, within MMP_RS03790at 716.142 kb on - strand, within MMP_RS03790at 716.144 kb on - strand, within MMP_RS03790at 716.145 kb on + strand, within MMP_RS03790at 716.145 kb on + strand, within MMP_RS03790at 716.145 kb on + strand, within MMP_RS03790at 716.165 kb on + strand, within MMP_RS03790at 716.206 kb on + strand, within MMP_RS03790at 716.252 kb on - strand, within MMP_RS03790at 716.252 kb on - strand, within MMP_RS03790at 716.258 kb on - strand, within MMP_RS03790at 716.259 kb on + strand, within MMP_RS03790at 716.326 kb on - strandat 716.350 kb on - strandat 716.388 kb on + strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.390 kb on + strand, within MMP_RS03795at 716.390 kb on + strand, within MMP_RS03795at 716.390 kb on + strand, within MMP_RS03795at 716.391 kb on - strand, within MMP_RS03795at 716.392 kb on + strand, within MMP_RS03795at 716.392 kb on + strand, within MMP_RS03795at 716.392 kb on + strand, within MMP_RS03795at 716.425 kb on + strand, within MMP_RS03795at 716.615 kb on + strand, within MMP_RS03795at 716.686 kb on - strand, within MMP_RS03795at 716.693 kb on - strand, within MMP_RS03795at 716.693 kb on - strand, within MMP_RS03795at 716.694 kb on + strand, within MMP_RS03795at 716.700 kb on + strand, within MMP_RS03795at 716.700 kb on + strand, within MMP_RS03795at 716.706 kb on - strand, within MMP_RS03795at 716.707 kb on + strand, within MMP_RS03795at 716.773 kb on + strand, within MMP_RS03795at 716.886 kb on - strandat 716.894 kb on - strandat 716.906 kb on - strandat 716.906 kb on - strandat 716.927 kb on - strandat 716.964 kb on - strandat 716.965 kb on + strandat 717.017 kb on + strandat 717.040 kb on - strandat 717.041 kb on + strandat 717.042 kb on - strandat 717.043 kb on + strandat 717.045 kb on + strandat 717.045 kb on + strandat 717.163 kb on - strandat 717.163 kb on - strandat 717.164 kb on + strandat 717.164 kb on + strandat 717.166 kb on - strandat 717.191 kb on + strandat 717.195 kb on - strandat 717.196 kb on + strandat 717.199 kb on - strandat 717.215 kb on - strandat 717.215 kb on - strandat 717.277 kb on + strand, within MMP_RS03800at 717.277 kb on + strand, within MMP_RS03800at 717.283 kb on - strand, within MMP_RS03800at 717.435 kb on + strand, within MMP_RS03800at 717.456 kb on - strandat 717.484 kb on + strandat 717.586 kb on - strandat 717.587 kb on + strandat 717.637 kb on + strandat 717.637 kb on + strandat 717.638 kb on - strandat 717.639 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell acetate and casamino FREE
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715,341 - -0.4
715,367 - -1.5
715,461 - MMP_RS03785 0.18 -0.5
715,573 + MMP_RS03785 0.50 -0.4
715,614 - MMP_RS03785 0.62 -1.2
715,735 + +1.0
715,780 - -1.7
715,794 - +0.1
715,798 - +0.6
715,798 - -0.4
715,798 - +0.4
715,821 - +0.8
715,822 + +0.2
715,822 + -0.7
715,822 + -1.3
715,822 + -0.2
715,824 + +0.8
715,870 - +0.1
715,892 - +0.3
715,893 + -0.0
716,093 - MMP_RS03790 0.48 +0.5
716,114 - MMP_RS03790 0.53 +1.4
716,140 + MMP_RS03790 0.59 -3.2
716,140 - MMP_RS03790 0.59 -0.0
716,140 - MMP_RS03790 0.59 +1.6
716,141 + MMP_RS03790 0.59 +0.4
716,142 - MMP_RS03790 0.60 -3.3
716,142 - MMP_RS03790 0.60 -1.7
716,144 - MMP_RS03790 0.60 -0.8
716,145 + MMP_RS03790 0.60 +1.4
716,145 + MMP_RS03790 0.60 -1.7
716,145 + MMP_RS03790 0.60 +0.2
716,165 + MMP_RS03790 0.65 -0.4
716,206 + MMP_RS03790 0.74 +0.6
716,252 - MMP_RS03790 0.85 -0.3
716,252 - MMP_RS03790 0.85 -0.7
716,258 - MMP_RS03790 0.86 +0.7
716,259 + MMP_RS03790 0.86 +0.8
716,326 - +0.9
716,350 - +0.5
716,388 + MMP_RS03795 0.11 -1.6
716,389 - MMP_RS03795 0.11 +0.3
716,389 - MMP_RS03795 0.11 -0.1
716,389 - MMP_RS03795 0.11 -0.3
716,389 - MMP_RS03795 0.11 +0.3
716,389 - MMP_RS03795 0.11 +1.1
716,389 - MMP_RS03795 0.11 -2.2
716,390 + MMP_RS03795 0.12 +0.3
716,390 + MMP_RS03795 0.12 -0.7
716,390 + MMP_RS03795 0.12 -0.3
716,391 - MMP_RS03795 0.12 +0.8
716,392 + MMP_RS03795 0.12 -0.9
716,392 + MMP_RS03795 0.12 +0.1
716,392 + MMP_RS03795 0.12 +0.7
716,425 + MMP_RS03795 0.18 +0.1
716,615 + MMP_RS03795 0.52 -0.0
716,686 - MMP_RS03795 0.65 -0.9
716,693 - MMP_RS03795 0.66 -0.9
716,693 - MMP_RS03795 0.66 +0.2
716,694 + MMP_RS03795 0.66 -0.2
716,700 + MMP_RS03795 0.67 +0.9
716,700 + MMP_RS03795 0.67 +0.9
716,706 - MMP_RS03795 0.68 +0.2
716,707 + MMP_RS03795 0.68 +1.8
716,773 + MMP_RS03795 0.80 -0.0
716,886 - +0.3
716,894 - +0.1
716,906 - -0.6
716,906 - -0.6
716,927 - +0.7
716,964 - -0.1
716,965 + -0.8
717,017 + -1.4
717,040 - -0.2
717,041 + +0.4
717,042 - +0.4
717,043 + -1.5
717,045 + +1.1
717,045 + +1.3
717,163 - +1.4
717,163 - +2.4
717,164 + +0.9
717,164 + +0.4
717,166 - -0.3
717,191 + -1.4
717,195 - +0.2
717,196 + -3.1
717,199 - +1.3
717,215 - +1.3
717,215 - +0.3
717,277 + MMP_RS03800 0.18 +0.9
717,277 + MMP_RS03800 0.18 +1.0
717,283 - MMP_RS03800 0.21 -0.4
717,435 + MMP_RS03800 0.85 -1.6
717,456 - -0.8
717,484 + -0.0
717,586 - +1.4
717,587 + -0.4
717,637 + -0.8
717,637 + +0.6
717,638 - +0.7
717,639 + +0.5

Or see this region's nucleotide sequence