Experiment: H2 deepwell acetate and casamino FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01120 and MMP_RS01125 are separated by 42 nucleotides MMP_RS01125 and MMP_RS01130 are separated by 69 nucleotides
MMP_RS01120: MMP_RS01120 - permease, at 210,169 to 211,125
_RS01120
MMP_RS01125: MMP_RS01125 - thioredoxin family protein, at 211,168 to 211,401
_RS01125
MMP_RS01130: MMP_RS01130 - flavoprotein, at 211,471 to 212,001
_RS01130
Position (kb) 211
212 Strain fitness (log2 ratio) -2
-1
0
1
2 at 210.188 kb on + strand at 210.201 kb on - strand at 210.202 kb on + strand at 210.290 kb on - strand, within MMP_RS01120 at 210.309 kb on + strand, within MMP_RS01120 at 210.309 kb on + strand, within MMP_RS01120 at 210.309 kb on + strand, within MMP_RS01120 at 210.322 kb on - strand, within MMP_RS01120 at 210.327 kb on - strand, within MMP_RS01120 at 210.328 kb on + strand, within MMP_RS01120 at 210.334 kb on - strand, within MMP_RS01120 at 210.407 kb on - strand, within MMP_RS01120 at 210.624 kb on - strand, within MMP_RS01120 at 210.664 kb on - strand, within MMP_RS01120 at 210.669 kb on + strand, within MMP_RS01120 at 211.030 kb on + strand at 211.184 kb on - strand at 211.217 kb on + strand, within MMP_RS01125 at 211.253 kb on - strand, within MMP_RS01125 at 211.254 kb on + strand, within MMP_RS01125 at 211.300 kb on - strand, within MMP_RS01125 at 211.300 kb on - strand, within MMP_RS01125 at 211.300 kb on - strand, within MMP_RS01125 at 211.301 kb on + strand, within MMP_RS01125 at 211.301 kb on + strand, within MMP_RS01125 at 211.305 kb on + strand, within MMP_RS01125 at 211.325 kb on - strand, within MMP_RS01125 at 211.416 kb on + strand at 211.429 kb on - strand at 211.429 kb on - strand at 211.455 kb on - strand at 211.455 kb on - strand at 211.456 kb on + strand at 211.456 kb on + strand at 211.457 kb on - strand at 211.457 kb on - strand at 211.458 kb on + strand at 211.458 kb on + strand at 211.458 kb on + strand at 211.458 kb on + strand at 211.496 kb on - strand at 211.497 kb on + strand at 211.500 kb on - strand at 211.678 kb on - strand, within MMP_RS01130 at 211.678 kb on - strand, within MMP_RS01130 at 211.746 kb on - strand, within MMP_RS01130 at 211.747 kb on + strand, within MMP_RS01130 at 211.770 kb on - strand, within MMP_RS01130 at 211.773 kb on + strand, within MMP_RS01130 at 211.806 kb on - strand, within MMP_RS01130 at 211.807 kb on + strand, within MMP_RS01130 at 211.880 kb on - strand, within MMP_RS01130 at 212.008 kb on - strand at 212.008 kb on - strand at 212.009 kb on + strand at 212.012 kb on - strand at 212.013 kb on + strand at 212.017 kb on + strand at 212.018 kb on - strand at 212.129 kb on - strand at 212.129 kb on - strand at 212.129 kb on - strand at 212.177 kb on - strand at 212.281 kb on - strand at 212.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell acetate and casamino FREE remove 210,188 + +0.8 210,201 - +1.1 210,202 + +0.0 210,290 - MMP_RS01120 0.13 -0.5 210,309 + MMP_RS01120 0.15 -0.7 210,309 + MMP_RS01120 0.15 -0.5 210,309 + MMP_RS01120 0.15 +0.5 210,322 - MMP_RS01120 0.16 +2.0 210,327 - MMP_RS01120 0.17 +0.7 210,328 + MMP_RS01120 0.17 +0.7 210,334 - MMP_RS01120 0.17 +1.0 210,407 - MMP_RS01120 0.25 +1.9 210,624 - MMP_RS01120 0.48 +0.2 210,664 - MMP_RS01120 0.52 +2.3 210,669 + MMP_RS01120 0.52 -1.2 211,030 + -1.8 211,184 - -0.8 211,217 + MMP_RS01125 0.21 +0.6 211,253 - MMP_RS01125 0.36 +0.9 211,254 + MMP_RS01125 0.37 +1.7 211,300 - MMP_RS01125 0.56 +2.2 211,300 - MMP_RS01125 0.56 +1.0 211,300 - MMP_RS01125 0.56 +1.8 211,301 + MMP_RS01125 0.57 +1.5 211,301 + MMP_RS01125 0.57 +1.9 211,305 + MMP_RS01125 0.59 -1.2 211,325 - MMP_RS01125 0.67 +1.6 211,416 + +1.3 211,429 - +0.8 211,429 - -1.1 211,455 - -0.5 211,455 - -2.1 211,456 + +0.5 211,456 + +1.1 211,457 - -0.2 211,457 - -0.7 211,458 + -1.7 211,458 + -1.2 211,458 + +0.4 211,458 + -0.7 211,496 - +1.9 211,497 + -0.4 211,500 - -2.4 211,678 - MMP_RS01130 0.39 +0.7 211,678 - MMP_RS01130 0.39 +2.4 211,746 - MMP_RS01130 0.52 +0.0 211,747 + MMP_RS01130 0.52 -1.1 211,770 - MMP_RS01130 0.56 -0.9 211,773 + MMP_RS01130 0.57 +1.1 211,806 - MMP_RS01130 0.63 +1.2 211,807 + MMP_RS01130 0.63 -0.1 211,880 - MMP_RS01130 0.77 +1.2 212,008 - -0.5 212,008 - +0.2 212,009 + +1.0 212,012 - +0.6 212,013 + +1.2 212,017 + +0.8 212,018 - -2.3 212,129 - +0.4 212,129 - -0.7 212,129 - +0.8 212,177 - +0.2 212,281 - +2.7 212,286 - +1.3
Or see this region's nucleotide sequence