Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00495

Experiment: H2 deepwell acetate and casamino FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00485 and MMP_RS00490 overlap by 1 nucleotidesMMP_RS00490 and MMP_RS00495 are separated by 134 nucleotidesMMP_RS00495 and MMP_RS00500 overlap by 11 nucleotides MMP_RS00485: MMP_RS00485 - mRNA surveillance protein pelota, at 96,131 to 97,177 _RS00485 MMP_RS00490: MMP_RS00490 - Tfx family DNA-binding protein, at 97,177 to 97,626 _RS00490 MMP_RS00495: MMP_RS00495 - hydroxymethylglutaryl-CoA reductase (NADPH), at 97,761 to 98,987 _RS00495 MMP_RS00500: MMP_RS00500 - glutamyl-tRNA reductase, at 98,977 to 100,125 _RS00500 Position (kb) 97 98 99Strain fitness (log2 ratio) -3 -2 -1 0 1at 96.940 kb on - strandat 97.091 kb on - strandat 97.092 kb on + strandat 97.279 kb on - strandat 97.351 kb on - strandat 97.357 kb on - strandat 97.401 kb on - strandat 97.406 kb on + strandat 97.419 kb on - strandat 97.424 kb on + strandat 97.435 kb on + strandat 97.457 kb on - strandat 97.458 kb on + strandat 97.461 kb on - strandat 97.530 kb on - strandat 97.546 kb on + strandat 97.626 kb on - strandat 97.654 kb on - strandat 97.654 kb on - strandat 97.655 kb on + strandat 97.655 kb on + strandat 97.656 kb on - strandat 97.656 kb on - strandat 97.656 kb on - strandat 97.677 kb on - strandat 97.678 kb on + strandat 97.682 kb on - strandat 98.085 kb on + strandat 98.470 kb on + strandat 98.639 kb on - strandat 98.643 kb on + strandat 98.781 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell acetate and casamino FREE
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96,940 - +0.8
97,091 - +0.7
97,092 + -0.4
97,279 - +0.0
97,351 - -1.6
97,357 - -2.2
97,401 - -1.7
97,406 + -1.6
97,419 - -2.6
97,424 + -1.8
97,435 + -1.0
97,457 - -2.1
97,458 + -1.4
97,461 - -0.3
97,530 - -2.5
97,546 + -2.4
97,626 - -0.4
97,654 - -1.6
97,654 - -1.3
97,655 + -0.7
97,655 + -1.3
97,656 - -2.2
97,656 - -2.8
97,656 - +0.5
97,677 - -0.3
97,678 + -0.5
97,682 - +0.5
98,085 + -1.6
98,470 + -1.6
98,639 - -1.5
98,643 + -1.4
98,781 + -2.8

Or see this region's nucleotide sequence