Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22425 and BWI76_RS22430 overlap by 4 nucleotides BWI76_RS22430 and BWI76_RS22435 overlap by 4 nucleotides BWI76_RS22435 and BWI76_RS22440 overlap by 7 nucleotides BWI76_RS22440 and BWI76_RS22445 are separated by 124 nucleotides
BWI76_RS22425: BWI76_RS22425 - metal ABC transporter substrate-binding protein, at 4,676,159 to 4,677,076
_RS22425
BWI76_RS22430: BWI76_RS22430 - manganese/iron transporter ATP-binding protein, at 4,677,073 to 4,677,894
_RS22430
BWI76_RS22435: BWI76_RS22435 - iron ABC transporter permease AfeC, at 4,677,891 to 4,678,739
_RS22435
BWI76_RS22440: BWI76_RS22440 - iron ABC transporter permease, at 4,678,733 to 4,679,587
_RS22440
BWI76_RS22445: BWI76_RS22445 - hypothetical protein, at 4,679,712 to 4,680,086
_RS22445
Position (kb) 4677
4678
4679 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4677.107 kb on + strand at 4677.363 kb on + strand, within BWI76_RS22430 at 4677.648 kb on + strand, within BWI76_RS22430 at 4677.811 kb on + strand, within BWI76_RS22430 at 4677.819 kb on - strand at 4678.036 kb on + strand, within BWI76_RS22435 at 4678.079 kb on - strand, within BWI76_RS22435 at 4678.174 kb on + strand, within BWI76_RS22435 at 4678.296 kb on - strand, within BWI76_RS22435 at 4678.351 kb on + strand, within BWI76_RS22435 at 4678.516 kb on - strand, within BWI76_RS22435 at 4678.561 kb on - strand, within BWI76_RS22435 at 4678.747 kb on + strand at 4678.747 kb on + strand at 4679.211 kb on + strand, within BWI76_RS22440 at 4679.272 kb on + strand, within BWI76_RS22440 at 4679.366 kb on - strand, within BWI76_RS22440 at 4679.425 kb on - strand, within BWI76_RS22440 at 4679.489 kb on + strand, within BWI76_RS22440 at 4679.642 kb on - strand at 4679.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 4,677,107 + +0.0 4,677,363 + BWI76_RS22430 0.35 -0.3 4,677,648 + BWI76_RS22430 0.70 -0.3 4,677,811 + BWI76_RS22430 0.90 -0.4 4,677,819 - +0.2 4,678,036 + BWI76_RS22435 0.17 -3.1 4,678,079 - BWI76_RS22435 0.22 -0.1 4,678,174 + BWI76_RS22435 0.33 -0.5 4,678,296 - BWI76_RS22435 0.48 -0.8 4,678,351 + BWI76_RS22435 0.54 -0.6 4,678,516 - BWI76_RS22435 0.74 -0.9 4,678,561 - BWI76_RS22435 0.79 +1.1 4,678,747 + +0.1 4,678,747 + -0.3 4,679,211 + BWI76_RS22440 0.56 -1.1 4,679,272 + BWI76_RS22440 0.63 +0.2 4,679,366 - BWI76_RS22440 0.74 +0.4 4,679,425 - BWI76_RS22440 0.81 -0.1 4,679,489 + BWI76_RS22440 0.88 -0.5 4,679,642 - -0.6 4,679,680 - +2.4
Or see this region's nucleotide sequence