Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19155 and BWI76_RS19160 are separated by 714 nucleotides BWI76_RS19160 and BWI76_RS19165 overlap by 4 nucleotides
BWI76_RS19155: BWI76_RS19155 - formate dehydrogenase-N subunit alpha, at 3,982,545 to 3,985,595
_RS19155
BWI76_RS19160: BWI76_RS19160 - histidine kinase, at 3,986,310 to 3,988,217
_RS19160
BWI76_RS19165: BWI76_RS19165 - chemotaxis protein CheY, at 3,988,214 to 3,988,912
_RS19165
Position (kb)
3986
3987
3988
3989 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3985.415 kb on - strand at 3985.440 kb on - strand at 3985.587 kb on + strand at 3985.590 kb on - strand at 3985.597 kb on - strand at 3985.613 kb on - strand at 3985.614 kb on - strand at 3985.734 kb on + strand at 3985.742 kb on - strand at 3985.742 kb on - strand at 3985.756 kb on + strand at 3985.756 kb on + strand at 3985.764 kb on - strand at 3985.764 kb on - strand at 3985.764 kb on - strand at 3985.798 kb on + strand at 3985.800 kb on + strand at 3985.800 kb on + strand at 3985.800 kb on + strand at 3985.800 kb on + strand at 3985.801 kb on - strand at 3985.801 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.810 kb on + strand at 3985.810 kb on + strand at 3985.812 kb on + strand at 3985.818 kb on - strand at 3985.818 kb on - strand at 3985.818 kb on - strand at 3985.818 kb on - strand at 3985.820 kb on - strand at 3985.825 kb on + strand at 3985.831 kb on + strand at 3985.839 kb on - strand at 3985.844 kb on - strand at 3985.844 kb on - strand at 3985.854 kb on - strand at 3985.879 kb on - strand at 3985.912 kb on - strand at 3985.981 kb on + strand at 3985.998 kb on - strand at 3986.058 kb on + strand at 3986.063 kb on + strand at 3986.063 kb on + strand at 3986.063 kb on + strand at 3986.066 kb on - strand at 3986.071 kb on - strand at 3986.071 kb on - strand at 3986.073 kb on + strand at 3986.073 kb on + strand at 3986.073 kb on + strand at 3986.073 kb on + strand at 3986.073 kb on + strand at 3986.081 kb on - strand at 3986.081 kb on - strand at 3986.081 kb on - strand at 3986.101 kb on - strand at 3986.118 kb on + strand at 3986.118 kb on + strand at 3986.126 kb on - strand at 3986.126 kb on - strand at 3986.128 kb on + strand at 3986.133 kb on + strand at 3986.136 kb on - strand at 3986.136 kb on - strand at 3986.138 kb on + strand at 3986.138 kb on + strand at 3986.141 kb on - strand at 3986.146 kb on - strand at 3986.162 kb on + strand at 3986.163 kb on + strand at 3986.163 kb on + strand at 3986.168 kb on + strand at 3986.170 kb on - strand at 3986.171 kb on - strand at 3986.186 kb on + strand at 3986.187 kb on + strand at 3986.194 kb on - strand at 3986.195 kb on - strand at 3986.200 kb on + strand at 3986.218 kb on - strand at 3986.231 kb on + strand at 3986.231 kb on + strand at 3986.231 kb on + strand at 3986.231 kb on + strand at 3986.239 kb on - strand at 3986.239 kb on - strand at 3986.239 kb on - strand at 3986.239 kb on - strand at 3986.239 kb on - strand at 3986.250 kb on + strand at 3986.300 kb on + strand at 3986.308 kb on - strand at 3986.331 kb on + strand at 3986.341 kb on - strand at 3986.344 kb on - strand at 3986.353 kb on + strand at 3986.369 kb on + strand at 3986.380 kb on + strand at 3986.396 kb on - strand at 3986.400 kb on + strand at 3986.408 kb on - strand at 3986.444 kb on + strand at 3986.454 kb on - strand at 3986.694 kb on + strand, within BWI76_RS19160 at 3986.971 kb on + strand, within BWI76_RS19160 at 3987.038 kb on + strand, within BWI76_RS19160 at 3987.284 kb on + strand, within BWI76_RS19160 at 3987.305 kb on + strand, within BWI76_RS19160 at 3987.425 kb on - strand, within BWI76_RS19160 at 3987.454 kb on + strand, within BWI76_RS19160 at 3987.562 kb on - strand, within BWI76_RS19160 at 3987.583 kb on - strand, within BWI76_RS19160 at 3987.777 kb on + strand, within BWI76_RS19160 at 3987.878 kb on + strand, within BWI76_RS19160 at 3987.889 kb on - strand, within BWI76_RS19160 at 3988.071 kb on - strand at 3988.071 kb on - strand at 3988.084 kb on + strand at 3988.084 kb on + strand at 3988.084 kb on + strand at 3988.084 kb on + strand at 3988.092 kb on - strand at 3988.092 kb on - strand at 3988.134 kb on - strand at 3988.212 kb on + strand at 3988.220 kb on - strand at 3988.290 kb on + strand, within BWI76_RS19165 at 3988.371 kb on + strand, within BWI76_RS19165 at 3988.403 kb on - strand, within BWI76_RS19165 at 3988.485 kb on - strand, within BWI76_RS19165 at 3988.521 kb on - strand, within BWI76_RS19165 at 3988.548 kb on + strand, within BWI76_RS19165 at 3988.651 kb on + strand, within BWI76_RS19165 at 3988.712 kb on - strand, within BWI76_RS19165 at 3988.729 kb on - strand, within BWI76_RS19165 at 3988.745 kb on - strand, within BWI76_RS19165 at 3988.777 kb on + strand, within BWI76_RS19165 at 3988.865 kb on - strand at 3988.906 kb on + strand at 3988.914 kb on - strand at 3988.914 kb on - strand at 3988.949 kb on + strand at 3988.957 kb on - strand at 3989.082 kb on + strand at 3989.090 kb on - strand at 3989.104 kb on + strand at 3989.104 kb on + strand at 3989.108 kb on - strand at 3989.123 kb on + strand at 3989.172 kb on + strand at 3989.172 kb on + strand at 3989.172 kb on + strand at 3989.172 kb on + strand at 3989.180 kb on - strand at 3989.180 kb on - strand at 3989.180 kb on - strand at 3989.180 kb on - strand at 3989.198 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 3,985,415 - +0.7 3,985,440 - -2.1 3,985,587 + +1.7 3,985,590 - +1.0 3,985,597 - +0.1 3,985,613 - +0.9 3,985,614 - -0.3 3,985,734 + +0.8 3,985,742 - +1.2 3,985,742 - +2.2 3,985,756 + +0.4 3,985,756 + +1.5 3,985,764 - +1.4 3,985,764 - +0.4 3,985,764 - +0.7 3,985,798 + -0.1 3,985,800 + -0.4 3,985,800 + -1.3 3,985,800 + -0.8 3,985,800 + +0.1 3,985,801 - -0.8 3,985,801 - +0.0 3,985,808 - -0.1 3,985,808 - +0.4 3,985,808 - -0.9 3,985,808 - +0.9 3,985,808 - +0.1 3,985,808 - -0.4 3,985,808 - +0.5 3,985,808 - +0.4 3,985,808 - +0.2 3,985,808 - +1.8 3,985,808 - +0.3 3,985,810 + -1.6 3,985,810 + -0.8 3,985,812 + -1.1 3,985,818 - +0.3 3,985,818 - +1.1 3,985,818 - +0.2 3,985,818 - -0.2 3,985,820 - +0.7 3,985,825 + -0.7 3,985,831 + +0.7 3,985,839 - +0.5 3,985,844 - +0.1 3,985,844 - -0.2 3,985,854 - -0.3 3,985,879 - -0.1 3,985,912 - +0.1 3,985,981 + -0.6 3,985,998 - -0.5 3,986,058 + -0.4 3,986,063 + -0.1 3,986,063 + -0.9 3,986,063 + +0.7 3,986,066 - -0.3 3,986,071 - -1.1 3,986,071 - +0.1 3,986,073 + -0.8 3,986,073 + -1.0 3,986,073 + -0.4 3,986,073 + -0.0 3,986,073 + -0.3 3,986,081 - +0.1 3,986,081 - +1.5 3,986,081 - -0.2 3,986,101 - +0.2 3,986,118 + -0.1 3,986,118 + -0.6 3,986,126 - -1.8 3,986,126 - +1.3 3,986,128 + -0.1 3,986,133 + -1.1 3,986,136 - +1.7 3,986,136 - +0.6 3,986,138 + -0.3 3,986,138 + +0.0 3,986,141 - +0.2 3,986,146 - +0.4 3,986,162 + -0.4 3,986,163 + -0.9 3,986,163 + -0.7 3,986,168 + -1.4 3,986,170 - +0.6 3,986,171 - +0.8 3,986,186 + +0.1 3,986,187 + -0.4 3,986,194 - +0.0 3,986,195 - +0.2 3,986,200 + +0.0 3,986,218 - -0.3 3,986,231 + -0.3 3,986,231 + -0.6 3,986,231 + +0.0 3,986,231 + -0.8 3,986,239 - +0.2 3,986,239 - +0.9 3,986,239 - +1.0 3,986,239 - +0.9 3,986,239 - +0.3 3,986,250 + -2.8 3,986,300 + +0.1 3,986,308 - +0.0 3,986,331 + +0.0 3,986,341 - -0.3 3,986,344 - +0.8 3,986,353 + +0.4 3,986,369 + -0.0 3,986,380 + +1.2 3,986,396 - +0.3 3,986,400 + -0.1 3,986,408 - +0.7 3,986,444 + +0.8 3,986,454 - +1.1 3,986,694 + BWI76_RS19160 0.20 -0.2 3,986,971 + BWI76_RS19160 0.35 +0.7 3,987,038 + BWI76_RS19160 0.38 +1.8 3,987,284 + BWI76_RS19160 0.51 +0.5 3,987,305 + BWI76_RS19160 0.52 +0.4 3,987,425 - BWI76_RS19160 0.58 +1.5 3,987,454 + BWI76_RS19160 0.60 +0.9 3,987,562 - BWI76_RS19160 0.66 -0.1 3,987,583 - BWI76_RS19160 0.67 +0.5 3,987,777 + BWI76_RS19160 0.77 +0.4 3,987,878 + BWI76_RS19160 0.82 +0.7 3,987,889 - BWI76_RS19160 0.83 +0.2 3,988,071 - +1.0 3,988,071 - +0.1 3,988,084 + +0.3 3,988,084 + -0.5 3,988,084 + -0.1 3,988,084 + +2.1 3,988,092 - +2.1 3,988,092 - +0.7 3,988,134 - +1.1 3,988,212 + -0.1 3,988,220 - +0.1 3,988,290 + BWI76_RS19165 0.11 +0.7 3,988,371 + BWI76_RS19165 0.22 +1.0 3,988,403 - BWI76_RS19165 0.27 +0.0 3,988,485 - BWI76_RS19165 0.39 +1.5 3,988,521 - BWI76_RS19165 0.44 +0.5 3,988,548 + BWI76_RS19165 0.48 +0.7 3,988,651 + BWI76_RS19165 0.63 +0.2 3,988,712 - BWI76_RS19165 0.71 +0.3 3,988,729 - BWI76_RS19165 0.74 +2.5 3,988,745 - BWI76_RS19165 0.76 +0.3 3,988,777 + BWI76_RS19165 0.81 +0.0 3,988,865 - +0.4 3,988,906 + +1.3 3,988,914 - +0.1 3,988,914 - +1.1 3,988,949 + -0.2 3,988,957 - +0.6 3,989,082 + +0.7 3,989,090 - -0.7 3,989,104 + +0.6 3,989,104 + +0.5 3,989,108 - +0.1 3,989,123 + +0.2 3,989,172 + -0.1 3,989,172 + -1.6 3,989,172 + -0.6 3,989,172 + +1.5 3,989,180 - -0.4 3,989,180 - +0.3 3,989,180 - +1.2 3,989,180 - +2.7 3,989,198 + +0.7
Or see this region's nucleotide sequence