Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15140

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15130 and BWI76_RS15135 are separated by 300 nucleotidesBWI76_RS15135 and BWI76_RS15140 are separated by 35 nucleotidesBWI76_RS15140 and BWI76_RS15145 overlap by 4 nucleotides BWI76_RS15130: BWI76_RS15130 - hypothetical protein, at 3,171,192 to 3,171,638 _RS15130 BWI76_RS15135: BWI76_RS15135 - hypothetical protein, at 3,171,939 to 3,172,229 _RS15135 BWI76_RS15140: BWI76_RS15140 - CusA/CzcA family heavy metal efflux RND transporter, at 3,172,265 to 3,175,378 _RS15140 BWI76_RS15145: BWI76_RS15145 - efflux transporter periplasmic adaptor subunit, at 3,175,375 to 3,176,844 _RS15145 Position (kb) 3172 3173 3174 3175 3176Strain fitness (log2 ratio) -1 0 1 2at 3171.359 kb on + strand, within BWI76_RS15130at 3171.413 kb on - strand, within BWI76_RS15130at 3171.745 kb on - strandat 3171.904 kb on - strandat 3172.060 kb on - strand, within BWI76_RS15135at 3172.090 kb on - strand, within BWI76_RS15135at 3172.159 kb on + strand, within BWI76_RS15135at 3172.167 kb on - strand, within BWI76_RS15135at 3172.346 kb on + strandat 3172.542 kb on - strandat 3172.695 kb on + strand, within BWI76_RS15140at 3172.703 kb on - strand, within BWI76_RS15140at 3172.801 kb on + strand, within BWI76_RS15140at 3173.250 kb on - strand, within BWI76_RS15140at 3173.250 kb on - strand, within BWI76_RS15140at 3173.368 kb on + strand, within BWI76_RS15140at 3173.578 kb on - strand, within BWI76_RS15140at 3173.597 kb on - strand, within BWI76_RS15140at 3173.904 kb on - strand, within BWI76_RS15140at 3173.910 kb on - strand, within BWI76_RS15140at 3173.945 kb on + strand, within BWI76_RS15140at 3173.960 kb on - strand, within BWI76_RS15140at 3174.009 kb on - strand, within BWI76_RS15140at 3174.366 kb on - strand, within BWI76_RS15140at 3174.394 kb on + strand, within BWI76_RS15140at 3174.404 kb on + strand, within BWI76_RS15140at 3174.404 kb on + strand, within BWI76_RS15140at 3174.404 kb on + strand, within BWI76_RS15140at 3174.412 kb on - strand, within BWI76_RS15140at 3174.422 kb on + strand, within BWI76_RS15140at 3174.490 kb on + strand, within BWI76_RS15140at 3174.769 kb on + strand, within BWI76_RS15140at 3174.858 kb on - strand, within BWI76_RS15140at 3175.080 kb on - strandat 3175.182 kb on - strandat 3175.386 kb on + strandat 3175.394 kb on - strandat 3175.394 kb on - strandat 3175.594 kb on - strand, within BWI76_RS15145at 3175.681 kb on - strand, within BWI76_RS15145at 3175.681 kb on - strand, within BWI76_RS15145at 3175.683 kb on + strand, within BWI76_RS15145at 3175.691 kb on - strand, within BWI76_RS15145at 3176.300 kb on + strand, within BWI76_RS15145at 3176.374 kb on - strand, within BWI76_RS15145

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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3,171,359 + BWI76_RS15130 0.37 -0.0
3,171,413 - BWI76_RS15130 0.49 -0.9
3,171,745 - -0.4
3,171,904 - +0.2
3,172,060 - BWI76_RS15135 0.42 +0.2
3,172,090 - BWI76_RS15135 0.52 +2.6
3,172,159 + BWI76_RS15135 0.76 +1.3
3,172,167 - BWI76_RS15135 0.78 +0.2
3,172,346 + -0.1
3,172,542 - +0.5
3,172,695 + BWI76_RS15140 0.14 +0.2
3,172,703 - BWI76_RS15140 0.14 -0.5
3,172,801 + BWI76_RS15140 0.17 +0.1
3,173,250 - BWI76_RS15140 0.32 +0.1
3,173,250 - BWI76_RS15140 0.32 -0.3
3,173,368 + BWI76_RS15140 0.35 +2.2
3,173,578 - BWI76_RS15140 0.42 +0.5
3,173,597 - BWI76_RS15140 0.43 +0.8
3,173,904 - BWI76_RS15140 0.53 +1.7
3,173,910 - BWI76_RS15140 0.53 +1.0
3,173,945 + BWI76_RS15140 0.54 -0.2
3,173,960 - BWI76_RS15140 0.54 -0.6
3,174,009 - BWI76_RS15140 0.56 -0.0
3,174,366 - BWI76_RS15140 0.67 +0.4
3,174,394 + BWI76_RS15140 0.68 +0.4
3,174,404 + BWI76_RS15140 0.69 -0.6
3,174,404 + BWI76_RS15140 0.69 +0.0
3,174,404 + BWI76_RS15140 0.69 -0.0
3,174,412 - BWI76_RS15140 0.69 +0.8
3,174,422 + BWI76_RS15140 0.69 +0.8
3,174,490 + BWI76_RS15140 0.71 +0.3
3,174,769 + BWI76_RS15140 0.80 +0.5
3,174,858 - BWI76_RS15140 0.83 +0.5
3,175,080 - -0.2
3,175,182 - +0.8
3,175,386 + +0.1
3,175,394 - +0.0
3,175,394 - +0.1
3,175,594 - BWI76_RS15145 0.15 +0.0
3,175,681 - BWI76_RS15145 0.21 -0.3
3,175,681 - BWI76_RS15145 0.21 -0.8
3,175,683 + BWI76_RS15145 0.21 +0.1
3,175,691 - BWI76_RS15145 0.21 +0.6
3,176,300 + BWI76_RS15145 0.63 +0.8
3,176,374 - BWI76_RS15145 0.68 -0.0

Or see this region's nucleotide sequence