Experiment: 4-Hydroxyacetophenone 0.00025 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_811 and Pf6N2E2_812 are separated by 70 nucleotides Pf6N2E2_812 and Pf6N2E2_813 are separated by 77 nucleotides Pf6N2E2_813 and Pf6N2E2_814 are separated by 212 nucleotides Pf6N2E2_814 and Pf6N2E2_815 overlap by 30 nucleotides
Pf6N2E2_811 - Transcriptional regulator of various polyols utilization, AraC family, at 943,910 to 944,815
_811
Pf6N2E2_812 - Glycosyltransferase, at 944,886 to 946,178
_812
Pf6N2E2_813 - Response regulator, at 946,256 to 946,561
_813
Pf6N2E2_814 - hypothetical protein, at 946,774 to 946,917
_814
Pf6N2E2_815 - Signal transduction histidine kinase, at 946,888 to 950,370
_815
Position (kb) 944
945
946
947 Strain fitness (log2 ratio) -2
-1
0
1
2 at 944.053 kb on + strand, within Pf6N2E2_811 at 944.053 kb on + strand, within Pf6N2E2_811 at 944.053 kb on + strand, within Pf6N2E2_811 at 944.054 kb on - strand, within Pf6N2E2_811 at 944.154 kb on + strand, within Pf6N2E2_811 at 944.154 kb on + strand, within Pf6N2E2_811 at 944.154 kb on + strand, within Pf6N2E2_811 at 944.155 kb on - strand, within Pf6N2E2_811 at 944.212 kb on - strand, within Pf6N2E2_811 at 944.227 kb on - strand, within Pf6N2E2_811 at 944.304 kb on + strand, within Pf6N2E2_811 at 944.486 kb on + strand, within Pf6N2E2_811 at 944.581 kb on + strand, within Pf6N2E2_811 at 944.622 kb on + strand, within Pf6N2E2_811 at 944.623 kb on - strand, within Pf6N2E2_811 at 944.637 kb on + strand, within Pf6N2E2_811 at 944.638 kb on - strand, within Pf6N2E2_811 at 944.638 kb on - strand, within Pf6N2E2_811 at 944.688 kb on + strand, within Pf6N2E2_811 at 944.742 kb on + strand at 944.742 kb on + strand at 944.761 kb on + strand at 944.761 kb on + strand at 944.781 kb on + strand at 944.781 kb on + strand at 944.781 kb on + strand at 944.807 kb on - strand at 944.831 kb on - strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 945.118 kb on + strand, within Pf6N2E2_812 at 945.118 kb on + strand, within Pf6N2E2_812 at 945.119 kb on - strand, within Pf6N2E2_812 at 945.119 kb on - strand, within Pf6N2E2_812 at 945.119 kb on - strand, within Pf6N2E2_812 at 945.369 kb on - strand, within Pf6N2E2_812 at 945.397 kb on + strand, within Pf6N2E2_812 at 945.398 kb on - strand, within Pf6N2E2_812 at 945.398 kb on - strand, within Pf6N2E2_812 at 945.398 kb on - strand, within Pf6N2E2_812 at 945.407 kb on - strand, within Pf6N2E2_812 at 946.138 kb on + strand at 946.138 kb on + strand at 946.138 kb on + strand at 946.138 kb on + strand at 946.139 kb on - strand at 946.342 kb on + strand, within Pf6N2E2_813 at 946.343 kb on - strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.627 kb on + strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.690 kb on + strand at 946.690 kb on + strand at 946.690 kb on + strand at 946.691 kb on - strand at 946.724 kb on - strand at 946.737 kb on + strand at 946.737 kb on + strand at 946.738 kb on - strand at 946.739 kb on + strand at 946.740 kb on - strand at 946.742 kb on + strand at 946.775 kb on + strand at 946.776 kb on - strand at 946.782 kb on + strand at 946.819 kb on + strand, within Pf6N2E2_814 at 946.819 kb on + strand, within Pf6N2E2_814 at 946.819 kb on + strand, within Pf6N2E2_814 at 946.819 kb on + strand, within Pf6N2E2_814 at 946.820 kb on - strand, within Pf6N2E2_814 at 946.820 kb on - strand, within Pf6N2E2_814 at 946.820 kb on - strand, within Pf6N2E2_814 at 946.820 kb on - strand, within Pf6N2E2_814 at 946.944 kb on + strand at 946.944 kb on + strand at 946.944 kb on + strand at 947.005 kb on + strand at 947.005 kb on + strand at 947.005 kb on + strand at 947.006 kb on - strand at 947.146 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyacetophenone 0.00025 M remove 944,053 + Pf6N2E2_811 0.16 -2.5 944,053 + Pf6N2E2_811 0.16 -1.5 944,053 + Pf6N2E2_811 0.16 +0.5 944,054 - Pf6N2E2_811 0.16 -0.1 944,154 + Pf6N2E2_811 0.27 -0.5 944,154 + Pf6N2E2_811 0.27 -0.3 944,154 + Pf6N2E2_811 0.27 +2.0 944,155 - Pf6N2E2_811 0.27 +1.2 944,212 - Pf6N2E2_811 0.33 -0.5 944,227 - Pf6N2E2_811 0.35 -0.8 944,304 + Pf6N2E2_811 0.43 -0.8 944,486 + Pf6N2E2_811 0.64 +0.3 944,581 + Pf6N2E2_811 0.74 +1.2 944,622 + Pf6N2E2_811 0.79 +1.2 944,623 - Pf6N2E2_811 0.79 +0.2 944,637 + Pf6N2E2_811 0.80 -1.1 944,638 - Pf6N2E2_811 0.80 +0.9 944,638 - Pf6N2E2_811 0.80 -1.7 944,688 + Pf6N2E2_811 0.86 +0.0 944,742 + -1.2 944,742 + +0.1 944,761 + -1.1 944,761 + +0.7 944,781 + -1.3 944,781 + +0.2 944,781 + -0.5 944,807 - -0.4 944,831 - -1.1 944,926 + +0.4 944,926 + -0.2 944,926 + +0.6 944,926 + +1.5 944,926 + -0.0 944,926 + -1.5 944,926 + +0.6 944,926 + -0.4 944,926 + -1.7 944,926 + +0.5 944,926 + -0.2 944,926 + +0.6 944,926 + +0.5 944,927 - -1.8 944,927 - +0.5 944,927 - -0.6 944,927 - -2.6 944,927 - +2.0 944,927 - -0.4 944,927 - +0.3 944,927 - +0.6 944,927 - -0.5 944,927 - -2.0 944,927 - -0.0 945,118 + Pf6N2E2_812 0.18 -1.7 945,118 + Pf6N2E2_812 0.18 -2.5 945,119 - Pf6N2E2_812 0.18 +1.6 945,119 - Pf6N2E2_812 0.18 -0.5 945,119 - Pf6N2E2_812 0.18 -2.3 945,369 - Pf6N2E2_812 0.37 -0.5 945,397 + Pf6N2E2_812 0.40 -0.5 945,398 - Pf6N2E2_812 0.40 -0.4 945,398 - Pf6N2E2_812 0.40 -2.5 945,398 - Pf6N2E2_812 0.40 -0.2 945,407 - Pf6N2E2_812 0.40 -0.5 946,138 + -1.6 946,138 + +0.4 946,138 + +0.8 946,138 + +0.5 946,139 - +1.5 946,342 + Pf6N2E2_813 0.28 -0.5 946,343 - Pf6N2E2_813 0.28 +0.3 946,527 + Pf6N2E2_813 0.89 +0.6 946,527 + Pf6N2E2_813 0.89 +0.2 946,527 + Pf6N2E2_813 0.89 -0.4 946,527 + Pf6N2E2_813 0.89 +1.5 946,527 + Pf6N2E2_813 0.89 -0.2 946,627 + -1.2 946,628 - -1.2 946,628 - +0.2 946,628 - -0.1 946,628 - +0.5 946,628 - +0.4 946,628 - -1.1 946,628 - +0.2 946,690 + +0.5 946,690 + +0.2 946,690 + -0.8 946,691 - -0.1 946,724 - +0.2 946,737 + +0.2 946,737 + +0.1 946,738 - -0.1 946,739 + +1.5 946,740 - +0.0 946,742 + +0.9 946,775 + -0.5 946,776 - -0.5 946,782 + +0.1 946,819 + Pf6N2E2_814 0.31 +0.3 946,819 + Pf6N2E2_814 0.31 -1.1 946,819 + Pf6N2E2_814 0.31 +0.1 946,819 + Pf6N2E2_814 0.31 -0.5 946,820 - Pf6N2E2_814 0.32 -0.0 946,820 - Pf6N2E2_814 0.32 +0.2 946,820 - Pf6N2E2_814 0.32 -1.3 946,820 - Pf6N2E2_814 0.32 +0.0 946,944 + +0.7 946,944 + +1.7 946,944 + -0.5 947,005 + -0.7 947,005 + +0.5 947,005 + -2.4 947,006 - -0.1 947,146 + +0.8
Or see this region's nucleotide sequence