Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4391

Experiment: 4-Hydroxyacetophenone 0.00025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4389 and Pf6N2E2_4390 are separated by 64 nucleotidesPf6N2E2_4390 and Pf6N2E2_4391 are separated by 155 nucleotidesPf6N2E2_4391 and Pf6N2E2_4392 overlap by 29 nucleotidesPf6N2E2_4392 and Pf6N2E2_4393 are separated by 97 nucleotides Pf6N2E2_4389 - FIG00954130: hypothetical protein, at 5,118,555 to 5,118,818 _4389 Pf6N2E2_4390 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 5,118,883 to 5,119,371 _4390 Pf6N2E2_4391 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 5,119,527 to 5,120,831 _4391 Pf6N2E2_4392 - Translation initiation inhibitor, at 5,120,803 to 5,121,156 _4392 Pf6N2E2_4393 - Alanine racemase (EC 5.1.1.1), at 5,121,254 to 5,122,327 _4393 Position (kb) 5119 5120 5121Strain fitness (log2 ratio) -3 -2 -1 0 1at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.811 kb on + strandat 5118.811 kb on + strandat 5118.811 kb on + strandat 5118.812 kb on - strandat 5118.812 kb on - strandat 5118.812 kb on - strandat 5118.816 kb on + strandat 5118.816 kb on + strandat 5118.817 kb on - strandat 5118.817 kb on - strandat 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.995 kb on + strand, within Pf6N2E2_4390at 5119.032 kb on - strand, within Pf6N2E2_4390at 5119.032 kb on - strand, within Pf6N2E2_4390at 5119.032 kb on - strand, within Pf6N2E2_4390at 5119.032 kb on - strand, within Pf6N2E2_4390at 5119.124 kb on + strand, within Pf6N2E2_4390at 5119.125 kb on - strand, within Pf6N2E2_4390at 5119.125 kb on - strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.309 kb on + strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.321 kb on - strand, within Pf6N2E2_4390at 5119.422 kb on - strandat 5119.431 kb on + strandat 5119.431 kb on + strandat 5119.433 kb on + strandat 5119.462 kb on + strandat 5119.462 kb on + strandat 5119.462 kb on + strandat 5119.462 kb on + strandat 5119.482 kb on + strandat 5119.482 kb on + strandat 5119.482 kb on + strandat 5119.483 kb on - strandat 5119.483 kb on - strandat 5119.483 kb on - strandat 5119.483 kb on - strandat 5119.486 kb on + strandat 5119.486 kb on + strandat 5119.486 kb on + strandat 5119.486 kb on + strandat 5119.487 kb on - strandat 5119.575 kb on + strandat 5119.575 kb on + strandat 5119.575 kb on + strandat 5119.575 kb on + strandat 5119.575 kb on + strandat 5119.576 kb on - strandat 5119.578 kb on + strandat 5119.578 kb on + strandat 5119.579 kb on - strandat 5119.579 kb on - strandat 5119.678 kb on - strand, within Pf6N2E2_4391at 5119.782 kb on + strand, within Pf6N2E2_4391at 5119.783 kb on - strand, within Pf6N2E2_4391at 5119.867 kb on - strand, within Pf6N2E2_4391at 5119.914 kb on + strand, within Pf6N2E2_4391at 5119.914 kb on + strand, within Pf6N2E2_4391at 5120.023 kb on + strand, within Pf6N2E2_4391at 5120.135 kb on + strand, within Pf6N2E2_4391at 5120.292 kb on + strand, within Pf6N2E2_4391at 5120.352 kb on + strand, within Pf6N2E2_4391at 5120.352 kb on + strand, within Pf6N2E2_4391at 5120.418 kb on + strand, within Pf6N2E2_4391at 5120.418 kb on + strand, within Pf6N2E2_4391at 5120.418 kb on + strand, within Pf6N2E2_4391at 5120.418 kb on + strand, within Pf6N2E2_4391at 5120.419 kb on - strand, within Pf6N2E2_4391at 5120.419 kb on - strand, within Pf6N2E2_4391at 5120.419 kb on - strand, within Pf6N2E2_4391at 5120.419 kb on - strand, within Pf6N2E2_4391at 5120.419 kb on - strand, within Pf6N2E2_4391at 5120.420 kb on + strand, within Pf6N2E2_4391at 5120.420 kb on + strand, within Pf6N2E2_4391at 5120.762 kb on + strandat 5120.762 kb on + strandat 5120.762 kb on + strandat 5120.763 kb on - strandat 5120.869 kb on + strand, within Pf6N2E2_4392at 5121.001 kb on + strand, within Pf6N2E2_4392at 5121.154 kb on + strandat 5121.158 kb on + strandat 5121.158 kb on + strandat 5121.158 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyacetophenone 0.00025 M
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5,118,786 + Pf6N2E2_4389 0.88 -0.2
5,118,786 + Pf6N2E2_4389 0.88 +0.8
5,118,786 + Pf6N2E2_4389 0.88 -1.0
5,118,786 + Pf6N2E2_4389 0.88 +1.0
5,118,786 + Pf6N2E2_4389 0.88 +0.1
5,118,786 + Pf6N2E2_4389 0.88 -0.3
5,118,786 + Pf6N2E2_4389 0.88 +0.7
5,118,786 + Pf6N2E2_4389 0.88 -0.1
5,118,786 + Pf6N2E2_4389 0.88 +0.8
5,118,786 + Pf6N2E2_4389 0.88 -1.0
5,118,786 + Pf6N2E2_4389 0.88 -1.3
5,118,786 + Pf6N2E2_4389 0.88 -0.3
5,118,786 + Pf6N2E2_4389 0.88 +0.2
5,118,786 + Pf6N2E2_4389 0.88 -0.9
5,118,786 + Pf6N2E2_4389 0.88 -0.1
5,118,787 - Pf6N2E2_4389 0.88 +0.8
5,118,787 - Pf6N2E2_4389 0.88 +0.2
5,118,787 - Pf6N2E2_4389 0.88 +1.0
5,118,787 - Pf6N2E2_4389 0.88 +0.5
5,118,787 - Pf6N2E2_4389 0.88 +0.9
5,118,787 - Pf6N2E2_4389 0.88 +0.9
5,118,787 - Pf6N2E2_4389 0.88 -1.3
5,118,787 - Pf6N2E2_4389 0.88 +0.4
5,118,787 - Pf6N2E2_4389 0.88 +0.2
5,118,787 - Pf6N2E2_4389 0.88 +0.5
5,118,787 - Pf6N2E2_4389 0.88 -0.3
5,118,811 + +0.6
5,118,811 + -0.2
5,118,811 + +0.2
5,118,812 - +0.1
5,118,812 - +0.2
5,118,812 - -0.4
5,118,816 + +0.9
5,118,816 + +1.5
5,118,817 - -2.0
5,118,817 - +0.0
5,118,935 + Pf6N2E2_4390 0.11 -0.2
5,118,935 + Pf6N2E2_4390 0.11 +0.0
5,118,935 + Pf6N2E2_4390 0.11 +0.9
5,118,935 + Pf6N2E2_4390 0.11 +0.7
5,118,935 + Pf6N2E2_4390 0.11 +0.3
5,118,935 + Pf6N2E2_4390 0.11 -0.2
5,118,936 - Pf6N2E2_4390 0.11 -1.3
5,118,936 - Pf6N2E2_4390 0.11 -2.7
5,118,936 - Pf6N2E2_4390 0.11 +0.9
5,118,936 - Pf6N2E2_4390 0.11 -0.0
5,118,936 - Pf6N2E2_4390 0.11 -0.2
5,118,995 + Pf6N2E2_4390 0.23 -1.2
5,119,032 - Pf6N2E2_4390 0.30 +0.1
5,119,032 - Pf6N2E2_4390 0.30 +0.4
5,119,032 - Pf6N2E2_4390 0.30 -1.5
5,119,032 - Pf6N2E2_4390 0.30 -1.5
5,119,124 + Pf6N2E2_4390 0.49 +0.6
5,119,125 - Pf6N2E2_4390 0.49 -2.6
5,119,125 - Pf6N2E2_4390 0.49 +0.9
5,119,193 + Pf6N2E2_4390 0.63 -0.6
5,119,193 + Pf6N2E2_4390 0.63 +0.2
5,119,193 + Pf6N2E2_4390 0.63 -0.6
5,119,193 + Pf6N2E2_4390 0.63 -1.2
5,119,193 + Pf6N2E2_4390 0.63 -1.2
5,119,193 + Pf6N2E2_4390 0.63 -1.8
5,119,193 + Pf6N2E2_4390 0.63 +0.8
5,119,193 + Pf6N2E2_4390 0.63 -0.9
5,119,309 + Pf6N2E2_4390 0.87 -0.8
5,119,310 - Pf6N2E2_4390 0.87 -0.4
5,119,310 - Pf6N2E2_4390 0.87 +0.3
5,119,310 - Pf6N2E2_4390 0.87 -1.1
5,119,310 - Pf6N2E2_4390 0.87 -0.7
5,119,310 - Pf6N2E2_4390 0.87 +1.1
5,119,321 - Pf6N2E2_4390 0.90 -0.6
5,119,422 - -0.2
5,119,431 + -0.6
5,119,431 + -1.3
5,119,433 + +0.7
5,119,462 + -1.0
5,119,462 + -0.5
5,119,462 + -0.5
5,119,462 + +0.5
5,119,482 + -0.4
5,119,482 + +0.5
5,119,482 + -1.0
5,119,483 - +1.5
5,119,483 - -1.9
5,119,483 - -0.8
5,119,483 - -0.3
5,119,486 + -1.1
5,119,486 + -1.7
5,119,486 + -0.2
5,119,486 + +0.2
5,119,487 - -0.7
5,119,575 + -1.4
5,119,575 + -1.7
5,119,575 + -1.7
5,119,575 + -0.6
5,119,575 + +0.8
5,119,576 - -0.3
5,119,578 + +1.4
5,119,578 + -0.9
5,119,579 - +0.9
5,119,579 - -1.2
5,119,678 - Pf6N2E2_4391 0.12 +0.2
5,119,782 + Pf6N2E2_4391 0.20 -1.9
5,119,783 - Pf6N2E2_4391 0.20 -0.5
5,119,867 - Pf6N2E2_4391 0.26 -0.5
5,119,914 + Pf6N2E2_4391 0.30 -1.8
5,119,914 + Pf6N2E2_4391 0.30 -0.8
5,120,023 + Pf6N2E2_4391 0.38 -0.9
5,120,135 + Pf6N2E2_4391 0.47 -1.2
5,120,292 + Pf6N2E2_4391 0.59 -1.1
5,120,352 + Pf6N2E2_4391 0.63 -1.8
5,120,352 + Pf6N2E2_4391 0.63 -2.8
5,120,418 + Pf6N2E2_4391 0.68 -0.8
5,120,418 + Pf6N2E2_4391 0.68 +0.9
5,120,418 + Pf6N2E2_4391 0.68 +0.2
5,120,418 + Pf6N2E2_4391 0.68 -0.7
5,120,419 - Pf6N2E2_4391 0.68 -0.1
5,120,419 - Pf6N2E2_4391 0.68 -1.6
5,120,419 - Pf6N2E2_4391 0.68 -0.9
5,120,419 - Pf6N2E2_4391 0.68 +0.9
5,120,419 - Pf6N2E2_4391 0.68 -0.7
5,120,420 + Pf6N2E2_4391 0.68 -1.4
5,120,420 + Pf6N2E2_4391 0.68 -1.9
5,120,762 + +0.0
5,120,762 + -0.0
5,120,762 + -0.0
5,120,763 - -2.1
5,120,869 + Pf6N2E2_4392 0.19 -0.3
5,121,001 + Pf6N2E2_4392 0.56 +0.4
5,121,154 + +0.9
5,121,158 + +0.6
5,121,158 + -0.0
5,121,158 + -0.9

Or see this region's nucleotide sequence