Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3804

Experiment: 4-Hydroxyacetophenone 0.00025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3803 and Pf6N2E2_3804 are separated by 70 nucleotidesPf6N2E2_3804 and Pf6N2E2_3805 are separated by 152 nucleotides Pf6N2E2_3803 - Histidine ABC transporter, histidine-binding protein (TC 3.A.1), at 4,430,711 to 4,431,679 _3803 Pf6N2E2_3804 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 4,431,750 to 4,433,216 _3804 Pf6N2E2_3805 - Urocanate hydratase (EC 4.2.1.49) (from data), at 4,433,369 to 4,435,057 _3805 Position (kb) 4431 4432 4433 4434Strain fitness (log2 ratio) -2 -1 0 1at 4431.019 kb on - strand, within Pf6N2E2_3803at 4431.019 kb on - strand, within Pf6N2E2_3803at 4431.021 kb on + strand, within Pf6N2E2_3803at 4431.021 kb on + strand, within Pf6N2E2_3803at 4431.021 kb on + strand, within Pf6N2E2_3803at 4431.022 kb on - strand, within Pf6N2E2_3803at 4431.022 kb on - strand, within Pf6N2E2_3803at 4431.022 kb on - strand, within Pf6N2E2_3803at 4431.048 kb on + strand, within Pf6N2E2_3803at 4431.048 kb on + strand, within Pf6N2E2_3803at 4431.048 kb on + strand, within Pf6N2E2_3803at 4431.105 kb on + strand, within Pf6N2E2_3803at 4431.106 kb on - strand, within Pf6N2E2_3803at 4431.123 kb on + strand, within Pf6N2E2_3803at 4431.180 kb on + strand, within Pf6N2E2_3803at 4431.228 kb on + strand, within Pf6N2E2_3803at 4431.306 kb on + strand, within Pf6N2E2_3803at 4431.306 kb on + strand, within Pf6N2E2_3803at 4431.318 kb on + strand, within Pf6N2E2_3803at 4431.318 kb on + strand, within Pf6N2E2_3803at 4431.318 kb on + strand, within Pf6N2E2_3803at 4431.319 kb on - strand, within Pf6N2E2_3803at 4431.319 kb on - strand, within Pf6N2E2_3803at 4431.319 kb on - strand, within Pf6N2E2_3803at 4431.319 kb on - strand, within Pf6N2E2_3803at 4431.319 kb on - strand, within Pf6N2E2_3803at 4431.319 kb on - strand, within Pf6N2E2_3803at 4431.319 kb on - strand, within Pf6N2E2_3803at 4431.502 kb on - strand, within Pf6N2E2_3803at 4431.680 kb on + strandat 4431.680 kb on + strandat 4431.680 kb on + strandat 4431.680 kb on + strandat 4431.680 kb on + strandat 4431.681 kb on - strandat 4431.681 kb on - strandat 4431.693 kb on + strandat 4431.693 kb on + strandat 4431.863 kb on - strandat 4431.863 kb on - strandat 4431.865 kb on + strandat 4431.866 kb on - strandat 4431.866 kb on - strandat 4431.866 kb on - strandat 4431.866 kb on - strandat 4431.943 kb on + strand, within Pf6N2E2_3804at 4431.943 kb on + strand, within Pf6N2E2_3804at 4431.943 kb on + strand, within Pf6N2E2_3804at 4431.943 kb on + strand, within Pf6N2E2_3804at 4431.960 kb on - strand, within Pf6N2E2_3804at 4431.991 kb on + strand, within Pf6N2E2_3804at 4431.991 kb on + strand, within Pf6N2E2_3804at 4431.991 kb on + strand, within Pf6N2E2_3804at 4432.060 kb on + strand, within Pf6N2E2_3804at 4432.060 kb on + strand, within Pf6N2E2_3804at 4432.081 kb on + strand, within Pf6N2E2_3804at 4432.081 kb on + strand, within Pf6N2E2_3804at 4432.081 kb on + strand, within Pf6N2E2_3804at 4432.081 kb on + strand, within Pf6N2E2_3804at 4432.084 kb on + strand, within Pf6N2E2_3804at 4432.084 kb on + strand, within Pf6N2E2_3804at 4432.084 kb on + strand, within Pf6N2E2_3804at 4432.085 kb on - strand, within Pf6N2E2_3804at 4432.085 kb on - strand, within Pf6N2E2_3804at 4432.085 kb on - strand, within Pf6N2E2_3804at 4432.085 kb on - strand, within Pf6N2E2_3804at 4432.301 kb on - strand, within Pf6N2E2_3804at 4432.348 kb on + strand, within Pf6N2E2_3804at 4432.348 kb on + strand, within Pf6N2E2_3804at 4432.348 kb on + strand, within Pf6N2E2_3804at 4432.349 kb on - strand, within Pf6N2E2_3804at 4432.393 kb on + strand, within Pf6N2E2_3804at 4432.393 kb on + strand, within Pf6N2E2_3804at 4432.393 kb on + strand, within Pf6N2E2_3804at 4432.543 kb on + strand, within Pf6N2E2_3804at 4432.543 kb on + strand, within Pf6N2E2_3804at 4432.682 kb on - strand, within Pf6N2E2_3804at 4432.682 kb on - strand, within Pf6N2E2_3804at 4432.867 kb on + strand, within Pf6N2E2_3804at 4432.867 kb on + strand, within Pf6N2E2_3804at 4432.867 kb on + strand, within Pf6N2E2_3804at 4432.868 kb on - strand, within Pf6N2E2_3804at 4432.906 kb on + strand, within Pf6N2E2_3804at 4432.906 kb on + strand, within Pf6N2E2_3804at 4432.906 kb on + strand, within Pf6N2E2_3804at 4432.907 kb on - strand, within Pf6N2E2_3804at 4433.156 kb on - strandat 4433.156 kb on - strandat 4433.204 kb on + strandat 4433.371 kb on - strandat 4433.483 kb on + strandat 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4434.000 kb on + strand, within Pf6N2E2_3805at 4434.000 kb on + strand, within Pf6N2E2_3805at 4434.000 kb on + strand, within Pf6N2E2_3805at 4434.001 kb on - strand, within Pf6N2E2_3805at 4434.001 kb on - strand, within Pf6N2E2_3805at 4434.001 kb on - strand, within Pf6N2E2_3805at 4434.001 kb on - strand, within Pf6N2E2_3805at 4434.079 kb on - strand, within Pf6N2E2_3805

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyacetophenone 0.00025 M
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4,431,019 - Pf6N2E2_3803 0.32 -0.3
4,431,019 - Pf6N2E2_3803 0.32 -1.7
4,431,021 + Pf6N2E2_3803 0.32 +0.0
4,431,021 + Pf6N2E2_3803 0.32 -0.8
4,431,021 + Pf6N2E2_3803 0.32 -0.3
4,431,022 - Pf6N2E2_3803 0.32 -1.1
4,431,022 - Pf6N2E2_3803 0.32 +0.7
4,431,022 - Pf6N2E2_3803 0.32 -0.6
4,431,048 + Pf6N2E2_3803 0.35 -0.3
4,431,048 + Pf6N2E2_3803 0.35 -0.0
4,431,048 + Pf6N2E2_3803 0.35 +1.0
4,431,105 + Pf6N2E2_3803 0.41 +0.3
4,431,106 - Pf6N2E2_3803 0.41 -0.9
4,431,123 + Pf6N2E2_3803 0.43 -1.2
4,431,180 + Pf6N2E2_3803 0.48 -0.9
4,431,228 + Pf6N2E2_3803 0.53 -0.8
4,431,306 + Pf6N2E2_3803 0.61 -0.7
4,431,306 + Pf6N2E2_3803 0.61 -1.1
4,431,318 + Pf6N2E2_3803 0.63 +0.3
4,431,318 + Pf6N2E2_3803 0.63 -0.8
4,431,318 + Pf6N2E2_3803 0.63 -1.0
4,431,319 - Pf6N2E2_3803 0.63 +0.1
4,431,319 - Pf6N2E2_3803 0.63 +0.5
4,431,319 - Pf6N2E2_3803 0.63 +0.8
4,431,319 - Pf6N2E2_3803 0.63 -0.6
4,431,319 - Pf6N2E2_3803 0.63 -2.0
4,431,319 - Pf6N2E2_3803 0.63 +0.9
4,431,319 - Pf6N2E2_3803 0.63 -0.2
4,431,502 - Pf6N2E2_3803 0.82 +0.6
4,431,680 + -0.3
4,431,680 + +1.0
4,431,680 + -0.3
4,431,680 + -0.5
4,431,680 + +0.7
4,431,681 - +0.3
4,431,681 - -0.4
4,431,693 + +0.4
4,431,693 + +1.6
4,431,863 - -0.7
4,431,863 - -1.1
4,431,865 + -0.6
4,431,866 - +0.7
4,431,866 - -1.8
4,431,866 - -1.5
4,431,866 - -1.1
4,431,943 + Pf6N2E2_3804 0.13 +1.1
4,431,943 + Pf6N2E2_3804 0.13 -0.1
4,431,943 + Pf6N2E2_3804 0.13 -0.8
4,431,943 + Pf6N2E2_3804 0.13 +0.5
4,431,960 - Pf6N2E2_3804 0.14 -0.6
4,431,991 + Pf6N2E2_3804 0.16 +1.0
4,431,991 + Pf6N2E2_3804 0.16 +0.9
4,431,991 + Pf6N2E2_3804 0.16 -0.0
4,432,060 + Pf6N2E2_3804 0.21 -1.3
4,432,060 + Pf6N2E2_3804 0.21 +0.3
4,432,081 + Pf6N2E2_3804 0.23 -0.1
4,432,081 + Pf6N2E2_3804 0.23 -1.1
4,432,081 + Pf6N2E2_3804 0.23 +1.7
4,432,081 + Pf6N2E2_3804 0.23 -2.3
4,432,084 + Pf6N2E2_3804 0.23 -0.5
4,432,084 + Pf6N2E2_3804 0.23 +0.7
4,432,084 + Pf6N2E2_3804 0.23 +1.3
4,432,085 - Pf6N2E2_3804 0.23 -1.4
4,432,085 - Pf6N2E2_3804 0.23 +0.3
4,432,085 - Pf6N2E2_3804 0.23 -0.6
4,432,085 - Pf6N2E2_3804 0.23 +0.1
4,432,301 - Pf6N2E2_3804 0.38 +0.2
4,432,348 + Pf6N2E2_3804 0.41 +0.2
4,432,348 + Pf6N2E2_3804 0.41 -0.5
4,432,348 + Pf6N2E2_3804 0.41 -0.1
4,432,349 - Pf6N2E2_3804 0.41 +1.1
4,432,393 + Pf6N2E2_3804 0.44 -0.1
4,432,393 + Pf6N2E2_3804 0.44 -0.3
4,432,393 + Pf6N2E2_3804 0.44 -0.1
4,432,543 + Pf6N2E2_3804 0.54 -0.6
4,432,543 + Pf6N2E2_3804 0.54 -1.5
4,432,682 - Pf6N2E2_3804 0.64 +0.4
4,432,682 - Pf6N2E2_3804 0.64 -1.7
4,432,867 + Pf6N2E2_3804 0.76 -0.4
4,432,867 + Pf6N2E2_3804 0.76 -0.0
4,432,867 + Pf6N2E2_3804 0.76 +1.2
4,432,868 - Pf6N2E2_3804 0.76 +0.3
4,432,906 + Pf6N2E2_3804 0.79 +1.4
4,432,906 + Pf6N2E2_3804 0.79 +1.1
4,432,906 + Pf6N2E2_3804 0.79 -0.6
4,432,907 - Pf6N2E2_3804 0.79 -0.1
4,433,156 - -0.0
4,433,156 - +0.9
4,433,204 + -0.8
4,433,371 - -0.7
4,433,483 + -0.1
4,433,925 + Pf6N2E2_3805 0.33 -1.0
4,433,925 + Pf6N2E2_3805 0.33 +0.5
4,433,925 + Pf6N2E2_3805 0.33 -0.1
4,433,925 + Pf6N2E2_3805 0.33 -0.4
4,433,925 + Pf6N2E2_3805 0.33 +0.3
4,433,925 + Pf6N2E2_3805 0.33 +0.4
4,433,925 + Pf6N2E2_3805 0.33 +0.2
4,433,925 + Pf6N2E2_3805 0.33 +0.6
4,433,925 + Pf6N2E2_3805 0.33 +0.5
4,433,926 - Pf6N2E2_3805 0.33 -1.2
4,433,926 - Pf6N2E2_3805 0.33 +0.1
4,433,926 - Pf6N2E2_3805 0.33 -0.7
4,433,926 - Pf6N2E2_3805 0.33 +0.8
4,433,926 - Pf6N2E2_3805 0.33 +0.9
4,433,926 - Pf6N2E2_3805 0.33 +1.2
4,434,000 + Pf6N2E2_3805 0.37 -0.1
4,434,000 + Pf6N2E2_3805 0.37 -0.0
4,434,000 + Pf6N2E2_3805 0.37 -0.4
4,434,001 - Pf6N2E2_3805 0.37 -0.4
4,434,001 - Pf6N2E2_3805 0.37 +0.9
4,434,001 - Pf6N2E2_3805 0.37 +1.4
4,434,001 - Pf6N2E2_3805 0.37 -0.0
4,434,079 - Pf6N2E2_3805 0.42 +1.1

Or see this region's nucleotide sequence