Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_243

Experiment: 4-Hydroxyacetophenone 0.00025 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_241 and Pf6N2E2_242 overlap by 1 nucleotidesPf6N2E2_242 and Pf6N2E2_243 are separated by 49 nucleotidesPf6N2E2_243 and Pf6N2E2_244 are separated by 36 nucleotides Pf6N2E2_241 - hypothetical protein, at 302,376 to 302,519 _241 Pf6N2E2_242 - Glycine betaine ABC transport system permease protein, at 302,519 to 303,202 _242 Pf6N2E2_243 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1), at 303,252 to 304,157 _243 Pf6N2E2_244 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 304,194 to 305,522 _244 Position (kb) 303 304 305Strain fitness (log2 ratio) -2 -1 0 1 2at 302.336 kb on - strandat 302.481 kb on + strand, within Pf6N2E2_241at 302.540 kb on + strandat 302.540 kb on + strandat 302.612 kb on + strand, within Pf6N2E2_242at 302.677 kb on + strand, within Pf6N2E2_242at 302.682 kb on - strand, within Pf6N2E2_242at 302.840 kb on - strand, within Pf6N2E2_242at 302.843 kb on + strand, within Pf6N2E2_242at 302.843 kb on + strand, within Pf6N2E2_242at 302.843 kb on + strand, within Pf6N2E2_242at 302.843 kb on + strand, within Pf6N2E2_242at 302.843 kb on + strand, within Pf6N2E2_242at 302.843 kb on + strand, within Pf6N2E2_242at 302.843 kb on + strand, within Pf6N2E2_242at 302.843 kb on + strand, within Pf6N2E2_242at 302.844 kb on - strand, within Pf6N2E2_242at 302.844 kb on - strand, within Pf6N2E2_242at 302.989 kb on + strand, within Pf6N2E2_242at 302.989 kb on + strand, within Pf6N2E2_242at 302.989 kb on + strand, within Pf6N2E2_242at 302.990 kb on - strand, within Pf6N2E2_242at 303.196 kb on + strandat 303.405 kb on + strand, within Pf6N2E2_243at 303.405 kb on + strand, within Pf6N2E2_243at 303.405 kb on + strand, within Pf6N2E2_243at 303.405 kb on + strand, within Pf6N2E2_243at 303.406 kb on - strand, within Pf6N2E2_243at 303.519 kb on + strand, within Pf6N2E2_243at 303.520 kb on - strand, within Pf6N2E2_243at 303.520 kb on - strand, within Pf6N2E2_243at 303.523 kb on + strand, within Pf6N2E2_243at 303.523 kb on + strand, within Pf6N2E2_243at 303.523 kb on + strand, within Pf6N2E2_243at 303.523 kb on + strand, within Pf6N2E2_243at 303.523 kb on + strand, within Pf6N2E2_243at 303.523 kb on + strand, within Pf6N2E2_243at 303.523 kb on + strand, within Pf6N2E2_243at 303.647 kb on + strand, within Pf6N2E2_243at 303.648 kb on - strand, within Pf6N2E2_243at 303.687 kb on + strand, within Pf6N2E2_243at 303.773 kb on - strand, within Pf6N2E2_243at 303.799 kb on - strand, within Pf6N2E2_243at 303.974 kb on + strand, within Pf6N2E2_243at 304.136 kb on + strandat 304.176 kb on + strandat 304.176 kb on + strandat 304.177 kb on - strandat 304.203 kb on - strandat 304.291 kb on + strandat 304.306 kb on - strandat 304.308 kb on + strandat 304.308 kb on + strandat 304.308 kb on + strandat 304.308 kb on + strandat 304.308 kb on + strandat 304.309 kb on - strandat 304.309 kb on - strandat 304.309 kb on - strandat 304.312 kb on + strandat 304.312 kb on + strandat 304.312 kb on + strandat 304.312 kb on + strandat 304.312 kb on + strandat 304.312 kb on + strandat 304.313 kb on - strandat 304.313 kb on - strandat 304.313 kb on - strandat 304.410 kb on + strand, within Pf6N2E2_244at 304.437 kb on - strand, within Pf6N2E2_244at 304.437 kb on - strand, within Pf6N2E2_244at 304.503 kb on + strand, within Pf6N2E2_244at 304.503 kb on + strand, within Pf6N2E2_244at 304.504 kb on - strand, within Pf6N2E2_244at 304.504 kb on - strand, within Pf6N2E2_244at 304.504 kb on - strand, within Pf6N2E2_244at 304.548 kb on + strand, within Pf6N2E2_244at 304.549 kb on - strand, within Pf6N2E2_244at 304.549 kb on - strand, within Pf6N2E2_244at 304.577 kb on + strand, within Pf6N2E2_244at 304.922 kb on + strand, within Pf6N2E2_244at 304.923 kb on - strand, within Pf6N2E2_244at 304.945 kb on - strand, within Pf6N2E2_244at 305.118 kb on + strand, within Pf6N2E2_244at 305.119 kb on - strand, within Pf6N2E2_244

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyacetophenone 0.00025 M
remove
302,336 - -1.1
302,481 + Pf6N2E2_241 0.73 -0.7
302,540 + +0.1
302,540 + +1.8
302,612 + Pf6N2E2_242 0.14 +0.6
302,677 + Pf6N2E2_242 0.23 +0.1
302,682 - Pf6N2E2_242 0.24 -0.9
302,840 - Pf6N2E2_242 0.47 -0.2
302,843 + Pf6N2E2_242 0.47 -1.1
302,843 + Pf6N2E2_242 0.47 +1.3
302,843 + Pf6N2E2_242 0.47 -0.1
302,843 + Pf6N2E2_242 0.47 -0.5
302,843 + Pf6N2E2_242 0.47 -0.7
302,843 + Pf6N2E2_242 0.47 +0.5
302,843 + Pf6N2E2_242 0.47 -1.3
302,843 + Pf6N2E2_242 0.47 +0.1
302,844 - Pf6N2E2_242 0.48 -0.3
302,844 - Pf6N2E2_242 0.48 +1.4
302,989 + Pf6N2E2_242 0.69 +2.5
302,989 + Pf6N2E2_242 0.69 -1.3
302,989 + Pf6N2E2_242 0.69 -1.0
302,990 - Pf6N2E2_242 0.69 -0.4
303,196 + -0.9
303,405 + Pf6N2E2_243 0.17 -0.1
303,405 + Pf6N2E2_243 0.17 +0.6
303,405 + Pf6N2E2_243 0.17 +1.4
303,405 + Pf6N2E2_243 0.17 -0.9
303,406 - Pf6N2E2_243 0.17 -0.3
303,519 + Pf6N2E2_243 0.29 -0.3
303,520 - Pf6N2E2_243 0.30 -1.6
303,520 - Pf6N2E2_243 0.30 +0.7
303,523 + Pf6N2E2_243 0.30 -2.1
303,523 + Pf6N2E2_243 0.30 -1.3
303,523 + Pf6N2E2_243 0.30 -1.8
303,523 + Pf6N2E2_243 0.30 -0.8
303,523 + Pf6N2E2_243 0.30 -1.1
303,523 + Pf6N2E2_243 0.30 +0.4
303,523 + Pf6N2E2_243 0.30 -0.8
303,647 + Pf6N2E2_243 0.44 +0.4
303,648 - Pf6N2E2_243 0.44 +0.7
303,687 + Pf6N2E2_243 0.48 -1.1
303,773 - Pf6N2E2_243 0.58 +0.1
303,799 - Pf6N2E2_243 0.60 -1.5
303,974 + Pf6N2E2_243 0.80 +0.1
304,136 + +0.0
304,176 + -0.3
304,176 + +0.8
304,177 - +1.3
304,203 - +0.0
304,291 + -0.8
304,306 - +1.2
304,308 + -0.5
304,308 + -0.7
304,308 + +0.5
304,308 + +0.0
304,308 + -0.5
304,309 - -1.5
304,309 - +0.3
304,309 - +0.2
304,312 + -0.4
304,312 + -0.4
304,312 + -1.8
304,312 + +0.3
304,312 + +0.1
304,312 + +1.0
304,313 - -0.9
304,313 - +0.2
304,313 - -0.2
304,410 + Pf6N2E2_244 0.16 +2.7
304,437 - Pf6N2E2_244 0.18 +0.0
304,437 - Pf6N2E2_244 0.18 -1.1
304,503 + Pf6N2E2_244 0.23 -0.1
304,503 + Pf6N2E2_244 0.23 -1.0
304,504 - Pf6N2E2_244 0.23 -0.6
304,504 - Pf6N2E2_244 0.23 -0.5
304,504 - Pf6N2E2_244 0.23 -1.2
304,548 + Pf6N2E2_244 0.27 +0.6
304,549 - Pf6N2E2_244 0.27 +0.7
304,549 - Pf6N2E2_244 0.27 -0.3
304,577 + Pf6N2E2_244 0.29 +0.4
304,922 + Pf6N2E2_244 0.55 +0.5
304,923 - Pf6N2E2_244 0.55 -0.9
304,945 - Pf6N2E2_244 0.57 +1.4
305,118 + Pf6N2E2_244 0.70 +0.2
305,119 - Pf6N2E2_244 0.70 -0.4

Or see this region's nucleotide sequence