Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1395

Experiment: 4-Hydroxyacetophenone 0.00025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1394 and Pf6N2E2_1395 are separated by 27 nucleotidesPf6N2E2_1395 and Pf6N2E2_1396 overlap by 4 nucleotidesPf6N2E2_1396 and Pf6N2E2_1397 overlap by 4 nucleotides Pf6N2E2_1394 - FIG00953323: hypothetical protein, at 1,634,368 to 1,635,534 _1394 Pf6N2E2_1395 - Uncharacterized conserved protein, at 1,635,562 to 1,636,551 _1395 Pf6N2E2_1396 - ABC transporter, ATP-binding protein, at 1,636,548 to 1,637,279 _1396 Pf6N2E2_1397 - ABC transporter permease protein, at 1,637,276 to 1,638,067 _1397 Position (kb) 1635 1636 1637Strain fitness (log2 ratio) -2 -1 0 1 2at 1634.801 kb on + strand, within Pf6N2E2_1394at 1634.801 kb on + strand, within Pf6N2E2_1394at 1634.801 kb on + strand, within Pf6N2E2_1394at 1634.802 kb on - strand, within Pf6N2E2_1394at 1634.914 kb on + strand, within Pf6N2E2_1394at 1634.914 kb on + strand, within Pf6N2E2_1394at 1635.092 kb on - strand, within Pf6N2E2_1394at 1635.178 kb on + strand, within Pf6N2E2_1394at 1635.179 kb on - strand, within Pf6N2E2_1394at 1635.179 kb on - strand, within Pf6N2E2_1394at 1635.515 kb on + strandat 1635.548 kb on + strandat 1635.784 kb on + strand, within Pf6N2E2_1395at 1635.784 kb on + strand, within Pf6N2E2_1395at 1635.784 kb on + strand, within Pf6N2E2_1395at 1635.785 kb on - strand, within Pf6N2E2_1395at 1635.785 kb on - strand, within Pf6N2E2_1395at 1635.785 kb on - strand, within Pf6N2E2_1395at 1635.910 kb on + strand, within Pf6N2E2_1395at 1635.910 kb on + strand, within Pf6N2E2_1395at 1635.910 kb on + strand, within Pf6N2E2_1395at 1635.910 kb on + strand, within Pf6N2E2_1395at 1635.910 kb on + strand, within Pf6N2E2_1395at 1635.911 kb on - strand, within Pf6N2E2_1395at 1635.911 kb on - strand, within Pf6N2E2_1395at 1635.911 kb on - strand, within Pf6N2E2_1395at 1635.911 kb on - strand, within Pf6N2E2_1395at 1636.084 kb on - strand, within Pf6N2E2_1395at 1636.196 kb on + strand, within Pf6N2E2_1395at 1636.303 kb on - strand, within Pf6N2E2_1395at 1636.482 kb on - strandat 1636.585 kb on - strandat 1636.585 kb on - strandat 1636.704 kb on + strand, within Pf6N2E2_1396at 1636.704 kb on + strand, within Pf6N2E2_1396at 1636.705 kb on - strand, within Pf6N2E2_1396at 1637.450 kb on + strand, within Pf6N2E2_1397at 1637.450 kb on + strand, within Pf6N2E2_1397at 1637.450 kb on + strand, within Pf6N2E2_1397at 1637.450 kb on + strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.470 kb on + strand, within Pf6N2E2_1397at 1637.470 kb on + strand, within Pf6N2E2_1397at 1637.471 kb on - strand, within Pf6N2E2_1397

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyacetophenone 0.00025 M
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1,634,801 + Pf6N2E2_1394 0.37 +0.2
1,634,801 + Pf6N2E2_1394 0.37 -0.4
1,634,801 + Pf6N2E2_1394 0.37 +0.7
1,634,802 - Pf6N2E2_1394 0.37 -1.4
1,634,914 + Pf6N2E2_1394 0.47 +0.4
1,634,914 + Pf6N2E2_1394 0.47 +1.7
1,635,092 - Pf6N2E2_1394 0.62 +0.5
1,635,178 + Pf6N2E2_1394 0.69 +0.2
1,635,179 - Pf6N2E2_1394 0.69 +0.3
1,635,179 - Pf6N2E2_1394 0.69 -0.8
1,635,515 + -0.0
1,635,548 + +0.8
1,635,784 + Pf6N2E2_1395 0.22 +0.7
1,635,784 + Pf6N2E2_1395 0.22 +2.4
1,635,784 + Pf6N2E2_1395 0.22 +1.4
1,635,785 - Pf6N2E2_1395 0.23 +0.3
1,635,785 - Pf6N2E2_1395 0.23 +1.0
1,635,785 - Pf6N2E2_1395 0.23 +1.5
1,635,910 + Pf6N2E2_1395 0.35 -0.9
1,635,910 + Pf6N2E2_1395 0.35 +0.4
1,635,910 + Pf6N2E2_1395 0.35 +1.5
1,635,910 + Pf6N2E2_1395 0.35 +1.4
1,635,910 + Pf6N2E2_1395 0.35 +0.5
1,635,911 - Pf6N2E2_1395 0.35 +0.7
1,635,911 - Pf6N2E2_1395 0.35 +0.9
1,635,911 - Pf6N2E2_1395 0.35 -0.8
1,635,911 - Pf6N2E2_1395 0.35 +1.0
1,636,084 - Pf6N2E2_1395 0.53 +1.0
1,636,196 + Pf6N2E2_1395 0.64 +0.2
1,636,303 - Pf6N2E2_1395 0.75 +0.4
1,636,482 - -0.5
1,636,585 - +0.9
1,636,585 - -0.9
1,636,704 + Pf6N2E2_1396 0.21 -0.1
1,636,704 + Pf6N2E2_1396 0.21 -0.5
1,636,705 - Pf6N2E2_1396 0.21 -0.8
1,637,450 + Pf6N2E2_1397 0.22 +0.4
1,637,450 + Pf6N2E2_1397 0.22 +0.5
1,637,450 + Pf6N2E2_1397 0.22 +0.1
1,637,450 + Pf6N2E2_1397 0.22 -0.4
1,637,451 - Pf6N2E2_1397 0.22 -1.7
1,637,451 - Pf6N2E2_1397 0.22 +0.5
1,637,451 - Pf6N2E2_1397 0.22 -0.9
1,637,451 - Pf6N2E2_1397 0.22 +0.6
1,637,451 - Pf6N2E2_1397 0.22 +0.9
1,637,451 - Pf6N2E2_1397 0.22 -1.3
1,637,451 - Pf6N2E2_1397 0.22 +0.1
1,637,451 - Pf6N2E2_1397 0.22 -0.2
1,637,451 - Pf6N2E2_1397 0.22 +1.4
1,637,451 - Pf6N2E2_1397 0.22 -0.1
1,637,451 - Pf6N2E2_1397 0.22 +0.1
1,637,451 - Pf6N2E2_1397 0.22 +0.5
1,637,468 + Pf6N2E2_1397 0.24 +0.1
1,637,468 + Pf6N2E2_1397 0.24 -0.3
1,637,468 + Pf6N2E2_1397 0.24 -0.3
1,637,468 + Pf6N2E2_1397 0.24 -0.5
1,637,468 + Pf6N2E2_1397 0.24 +0.6
1,637,468 + Pf6N2E2_1397 0.24 +2.0
1,637,468 + Pf6N2E2_1397 0.24 -0.7
1,637,468 + Pf6N2E2_1397 0.24 -0.7
1,637,468 + Pf6N2E2_1397 0.24 -0.2
1,637,468 + Pf6N2E2_1397 0.24 -1.4
1,637,468 + Pf6N2E2_1397 0.24 +0.9
1,637,468 + Pf6N2E2_1397 0.24 +1.6
1,637,469 - Pf6N2E2_1397 0.24 -0.2
1,637,469 - Pf6N2E2_1397 0.24 +1.8
1,637,469 - Pf6N2E2_1397 0.24 +0.1
1,637,469 - Pf6N2E2_1397 0.24 -1.1
1,637,469 - Pf6N2E2_1397 0.24 +0.1
1,637,469 - Pf6N2E2_1397 0.24 -0.6
1,637,469 - Pf6N2E2_1397 0.24 +0.1
1,637,469 - Pf6N2E2_1397 0.24 -1.8
1,637,469 - Pf6N2E2_1397 0.24 +0.3
1,637,469 - Pf6N2E2_1397 0.24 -0.2
1,637,469 - Pf6N2E2_1397 0.24 +0.4
1,637,469 - Pf6N2E2_1397 0.24 +0.8
1,637,470 + Pf6N2E2_1397 0.24 +0.3
1,637,470 + Pf6N2E2_1397 0.24 -1.8
1,637,471 - Pf6N2E2_1397 0.25 +0.3

Or see this region's nucleotide sequence