Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27045

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27040 and BWI76_RS27045 are separated by 122 nucleotidesBWI76_RS27045 and BWI76_RS27050 are separated by 60 nucleotidesBWI76_RS27050 and BWI76_RS27055 overlap by 59 nucleotides BWI76_RS27040: BWI76_RS27040 - xylose ABC transporter permease, at 5,610,773 to 5,611,954 _RS27040 BWI76_RS27045: BWI76_RS27045 - XylR family transcriptional regulator, at 5,612,077 to 5,613,255 _RS27045 BWI76_RS27050: BWI76_RS27050 - hypothetical protein, at 5,613,316 to 5,614,143 _RS27050 BWI76_RS27055: BWI76_RS27055 - hypothetical protein, at 5,614,085 to 5,614,378 _RS27055 Position (kb) 5612 5613 5614Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5611.131 kb on - strand, within BWI76_RS27040at 5611.248 kb on + strand, within BWI76_RS27040at 5611.267 kb on - strand, within BWI76_RS27040at 5611.379 kb on - strand, within BWI76_RS27040at 5611.399 kb on + strand, within BWI76_RS27040at 5611.399 kb on + strand, within BWI76_RS27040at 5611.695 kb on + strand, within BWI76_RS27040at 5611.778 kb on + strand, within BWI76_RS27040at 5611.786 kb on - strand, within BWI76_RS27040at 5611.843 kb on + strandat 5611.843 kb on + strandat 5611.936 kb on - strandat 5611.951 kb on - strandat 5611.958 kb on - strandat 5612.000 kb on - strandat 5612.039 kb on + strandat 5612.039 kb on + strandat 5612.047 kb on - strandat 5612.049 kb on + strandat 5612.062 kb on + strandat 5612.096 kb on + strandat 5612.125 kb on + strandat 5612.133 kb on - strandat 5612.133 kb on - strandat 5612.133 kb on - strandat 5612.133 kb on - strandat 5612.163 kb on + strandat 5612.163 kb on + strandat 5612.394 kb on + strand, within BWI76_RS27045at 5612.743 kb on - strand, within BWI76_RS27045at 5612.743 kb on - strand, within BWI76_RS27045at 5612.772 kb on + strand, within BWI76_RS27045at 5612.780 kb on - strand, within BWI76_RS27045at 5612.906 kb on - strand, within BWI76_RS27045at 5612.954 kb on + strand, within BWI76_RS27045at 5612.979 kb on + strand, within BWI76_RS27045at 5612.986 kb on - strand, within BWI76_RS27045at 5613.212 kb on + strandat 5613.214 kb on - strandat 5613.378 kb on + strandat 5613.454 kb on - strand, within BWI76_RS27050at 5613.679 kb on - strand, within BWI76_RS27050at 5613.698 kb on + strand, within BWI76_RS27050at 5613.874 kb on + strand, within BWI76_RS27050at 5613.877 kb on - strand, within BWI76_RS27050at 5614.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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5,611,131 - BWI76_RS27040 0.30 -0.9
5,611,248 + BWI76_RS27040 0.40 -0.5
5,611,267 - BWI76_RS27040 0.42 -0.4
5,611,379 - BWI76_RS27040 0.51 -0.1
5,611,399 + BWI76_RS27040 0.53 -0.9
5,611,399 + BWI76_RS27040 0.53 -0.9
5,611,695 + BWI76_RS27040 0.78 +0.2
5,611,778 + BWI76_RS27040 0.85 -1.2
5,611,786 - BWI76_RS27040 0.86 -0.6
5,611,843 + -0.1
5,611,843 + -0.5
5,611,936 - +1.1
5,611,951 - -0.4
5,611,958 - -0.5
5,612,000 - -0.6
5,612,039 + -0.5
5,612,039 + -1.2
5,612,047 - +0.5
5,612,049 + -0.8
5,612,062 + -0.3
5,612,096 + -3.3
5,612,125 + -0.0
5,612,133 - -2.8
5,612,133 - -1.5
5,612,133 - -2.4
5,612,133 - -3.8
5,612,163 + -5.1
5,612,163 + -1.2
5,612,394 + BWI76_RS27045 0.27 -1.7
5,612,743 - BWI76_RS27045 0.56 -1.1
5,612,743 - BWI76_RS27045 0.56 -2.5
5,612,772 + BWI76_RS27045 0.59 -1.7
5,612,780 - BWI76_RS27045 0.60 -1.0
5,612,906 - BWI76_RS27045 0.70 -1.9
5,612,954 + BWI76_RS27045 0.74 -3.6
5,612,979 + BWI76_RS27045 0.77 -4.1
5,612,986 - BWI76_RS27045 0.77 -3.6
5,613,212 + -1.9
5,613,214 - -1.0
5,613,378 + -0.8
5,613,454 - BWI76_RS27050 0.17 -0.4
5,613,679 - BWI76_RS27050 0.44 +0.2
5,613,698 + BWI76_RS27050 0.46 -0.1
5,613,874 + BWI76_RS27050 0.67 +0.0
5,613,877 - BWI76_RS27050 0.68 +0.2
5,614,122 - +0.6

Or see this region's nucleotide sequence