Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27040 and BWI76_RS27045 are separated by 122 nucleotides BWI76_RS27045 and BWI76_RS27050 are separated by 60 nucleotides BWI76_RS27050 and BWI76_RS27055 overlap by 59 nucleotides
BWI76_RS27040: BWI76_RS27040 - xylose ABC transporter permease, at 5,610,773 to 5,611,954
_RS27040
BWI76_RS27045: BWI76_RS27045 - XylR family transcriptional regulator, at 5,612,077 to 5,613,255
_RS27045
BWI76_RS27050: BWI76_RS27050 - hypothetical protein, at 5,613,316 to 5,614,143
_RS27050
BWI76_RS27055: BWI76_RS27055 - hypothetical protein, at 5,614,085 to 5,614,378
_RS27055
Position (kb)
5612
5613
5614 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 5611.131 kb on - strand, within BWI76_RS27040 at 5611.248 kb on + strand, within BWI76_RS27040 at 5611.267 kb on - strand, within BWI76_RS27040 at 5611.379 kb on - strand, within BWI76_RS27040 at 5611.399 kb on + strand, within BWI76_RS27040 at 5611.399 kb on + strand, within BWI76_RS27040 at 5611.695 kb on + strand, within BWI76_RS27040 at 5611.778 kb on + strand, within BWI76_RS27040 at 5611.786 kb on - strand, within BWI76_RS27040 at 5611.843 kb on + strand at 5611.843 kb on + strand at 5611.936 kb on - strand at 5611.951 kb on - strand at 5611.958 kb on - strand at 5612.000 kb on - strand at 5612.039 kb on + strand at 5612.039 kb on + strand at 5612.047 kb on - strand at 5612.049 kb on + strand at 5612.062 kb on + strand at 5612.096 kb on + strand at 5612.125 kb on + strand at 5612.133 kb on - strand at 5612.133 kb on - strand at 5612.133 kb on - strand at 5612.133 kb on - strand at 5612.163 kb on + strand at 5612.163 kb on + strand at 5612.394 kb on + strand, within BWI76_RS27045 at 5612.743 kb on - strand, within BWI76_RS27045 at 5612.743 kb on - strand, within BWI76_RS27045 at 5612.772 kb on + strand, within BWI76_RS27045 at 5612.780 kb on - strand, within BWI76_RS27045 at 5612.906 kb on - strand, within BWI76_RS27045 at 5612.954 kb on + strand, within BWI76_RS27045 at 5612.979 kb on + strand, within BWI76_RS27045 at 5612.986 kb on - strand, within BWI76_RS27045 at 5613.212 kb on + strand at 5613.214 kb on - strand at 5613.378 kb on + strand at 5613.454 kb on - strand, within BWI76_RS27050 at 5613.679 kb on - strand, within BWI76_RS27050 at 5613.698 kb on + strand, within BWI76_RS27050 at 5613.874 kb on + strand, within BWI76_RS27050 at 5613.877 kb on - strand, within BWI76_RS27050 at 5614.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,611,131 - BWI76_RS27040 0.30 -0.9 5,611,248 + BWI76_RS27040 0.40 -0.5 5,611,267 - BWI76_RS27040 0.42 -0.4 5,611,379 - BWI76_RS27040 0.51 -0.1 5,611,399 + BWI76_RS27040 0.53 -0.9 5,611,399 + BWI76_RS27040 0.53 -0.9 5,611,695 + BWI76_RS27040 0.78 +0.2 5,611,778 + BWI76_RS27040 0.85 -1.2 5,611,786 - BWI76_RS27040 0.86 -0.6 5,611,843 + -0.1 5,611,843 + -0.5 5,611,936 - +1.1 5,611,951 - -0.4 5,611,958 - -0.5 5,612,000 - -0.6 5,612,039 + -0.5 5,612,039 + -1.2 5,612,047 - +0.5 5,612,049 + -0.8 5,612,062 + -0.3 5,612,096 + -3.3 5,612,125 + -0.0 5,612,133 - -2.8 5,612,133 - -1.5 5,612,133 - -2.4 5,612,133 - -3.8 5,612,163 + -5.1 5,612,163 + -1.2 5,612,394 + BWI76_RS27045 0.27 -1.7 5,612,743 - BWI76_RS27045 0.56 -1.1 5,612,743 - BWI76_RS27045 0.56 -2.5 5,612,772 + BWI76_RS27045 0.59 -1.7 5,612,780 - BWI76_RS27045 0.60 -1.0 5,612,906 - BWI76_RS27045 0.70 -1.9 5,612,954 + BWI76_RS27045 0.74 -3.6 5,612,979 + BWI76_RS27045 0.77 -4.1 5,612,986 - BWI76_RS27045 0.77 -3.6 5,613,212 + -1.9 5,613,214 - -1.0 5,613,378 + -0.8 5,613,454 - BWI76_RS27050 0.17 -0.4 5,613,679 - BWI76_RS27050 0.44 +0.2 5,613,698 + BWI76_RS27050 0.46 -0.1 5,613,874 + BWI76_RS27050 0.67 +0.0 5,613,877 - BWI76_RS27050 0.68 +0.2 5,614,122 - +0.6
Or see this region's nucleotide sequence