Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27035 and BWI76_RS27040 overlap by 23 nucleotides BWI76_RS27040 and BWI76_RS27045 are separated by 122 nucleotides
BWI76_RS27035: BWI76_RS27035 - xylose ABC transporter ATP-binding protein, at 5,609,254 to 5,610,795
_RS27035
BWI76_RS27040: BWI76_RS27040 - xylose ABC transporter permease, at 5,610,773 to 5,611,954
_RS27040
BWI76_RS27045: BWI76_RS27045 - XylR family transcriptional regulator, at 5,612,077 to 5,613,255
_RS27045
Position (kb)
5610
5611
5612 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 5609.781 kb on + strand, within BWI76_RS27035 at 5609.865 kb on + strand, within BWI76_RS27035 at 5609.865 kb on + strand, within BWI76_RS27035 at 5609.873 kb on - strand, within BWI76_RS27035 at 5609.875 kb on + strand, within BWI76_RS27035 at 5609.877 kb on + strand, within BWI76_RS27035 at 5609.893 kb on - strand, within BWI76_RS27035 at 5609.898 kb on + strand, within BWI76_RS27035 at 5609.972 kb on + strand, within BWI76_RS27035 at 5609.980 kb on - strand, within BWI76_RS27035 at 5609.987 kb on + strand, within BWI76_RS27035 at 5610.004 kb on + strand, within BWI76_RS27035 at 5610.004 kb on + strand, within BWI76_RS27035 at 5610.012 kb on - strand, within BWI76_RS27035 at 5610.138 kb on + strand, within BWI76_RS27035 at 5610.141 kb on - strand, within BWI76_RS27035 at 5610.239 kb on + strand, within BWI76_RS27035 at 5610.312 kb on + strand, within BWI76_RS27035 at 5610.377 kb on + strand, within BWI76_RS27035 at 5610.377 kb on + strand, within BWI76_RS27035 at 5610.385 kb on - strand, within BWI76_RS27035 at 5610.385 kb on - strand, within BWI76_RS27035 at 5610.394 kb on + strand, within BWI76_RS27035 at 5610.638 kb on + strand, within BWI76_RS27035 at 5610.727 kb on - strand at 5610.727 kb on - strand at 5610.731 kb on + strand at 5610.762 kb on - strand at 5610.849 kb on + strand at 5610.886 kb on - strand at 5610.955 kb on + strand, within BWI76_RS27040 at 5610.998 kb on - strand, within BWI76_RS27040 at 5611.131 kb on - strand, within BWI76_RS27040 at 5611.248 kb on + strand, within BWI76_RS27040 at 5611.267 kb on - strand, within BWI76_RS27040 at 5611.379 kb on - strand, within BWI76_RS27040 at 5611.399 kb on + strand, within BWI76_RS27040 at 5611.399 kb on + strand, within BWI76_RS27040 at 5611.695 kb on + strand, within BWI76_RS27040 at 5611.778 kb on + strand, within BWI76_RS27040 at 5611.786 kb on - strand, within BWI76_RS27040 at 5611.843 kb on + strand at 5611.843 kb on + strand at 5611.936 kb on - strand at 5611.951 kb on - strand at 5611.958 kb on - strand at 5612.000 kb on - strand at 5612.039 kb on + strand at 5612.039 kb on + strand at 5612.047 kb on - strand at 5612.049 kb on + strand at 5612.062 kb on + strand at 5612.096 kb on + strand at 5612.125 kb on + strand at 5612.133 kb on - strand at 5612.133 kb on - strand at 5612.133 kb on - strand at 5612.133 kb on - strand at 5612.163 kb on + strand at 5612.163 kb on + strand at 5612.394 kb on + strand, within BWI76_RS27045 at 5612.743 kb on - strand, within BWI76_RS27045 at 5612.743 kb on - strand, within BWI76_RS27045 at 5612.772 kb on + strand, within BWI76_RS27045 at 5612.780 kb on - strand, within BWI76_RS27045 at 5612.906 kb on - strand, within BWI76_RS27045 at 5612.954 kb on + strand, within BWI76_RS27045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,609,781 + BWI76_RS27035 0.34 -1.9 5,609,865 + BWI76_RS27035 0.40 -1.0 5,609,865 + BWI76_RS27035 0.40 -0.5 5,609,873 - BWI76_RS27035 0.40 -1.4 5,609,875 + BWI76_RS27035 0.40 +0.4 5,609,877 + BWI76_RS27035 0.40 -0.8 5,609,893 - BWI76_RS27035 0.41 +0.2 5,609,898 + BWI76_RS27035 0.42 -1.4 5,609,972 + BWI76_RS27035 0.47 -1.3 5,609,980 - BWI76_RS27035 0.47 +0.2 5,609,987 + BWI76_RS27035 0.48 +0.3 5,610,004 + BWI76_RS27035 0.49 -1.0 5,610,004 + BWI76_RS27035 0.49 -0.4 5,610,012 - BWI76_RS27035 0.49 +1.1 5,610,138 + BWI76_RS27035 0.57 -1.2 5,610,141 - BWI76_RS27035 0.58 -0.2 5,610,239 + BWI76_RS27035 0.64 -0.1 5,610,312 + BWI76_RS27035 0.69 -0.3 5,610,377 + BWI76_RS27035 0.73 -1.2 5,610,377 + BWI76_RS27035 0.73 -0.7 5,610,385 - BWI76_RS27035 0.73 -1.7 5,610,385 - BWI76_RS27035 0.73 -1.0 5,610,394 + BWI76_RS27035 0.74 +0.4 5,610,638 + BWI76_RS27035 0.90 +1.2 5,610,727 - +0.2 5,610,727 - -1.2 5,610,731 + -0.4 5,610,762 - -0.3 5,610,849 + -0.8 5,610,886 - -1.1 5,610,955 + BWI76_RS27040 0.15 -1.0 5,610,998 - BWI76_RS27040 0.19 -2.8 5,611,131 - BWI76_RS27040 0.30 -0.9 5,611,248 + BWI76_RS27040 0.40 -0.5 5,611,267 - BWI76_RS27040 0.42 -0.4 5,611,379 - BWI76_RS27040 0.51 -0.1 5,611,399 + BWI76_RS27040 0.53 -0.9 5,611,399 + BWI76_RS27040 0.53 -0.9 5,611,695 + BWI76_RS27040 0.78 +0.2 5,611,778 + BWI76_RS27040 0.85 -1.2 5,611,786 - BWI76_RS27040 0.86 -0.6 5,611,843 + -0.1 5,611,843 + -0.5 5,611,936 - +1.1 5,611,951 - -0.4 5,611,958 - -0.5 5,612,000 - -0.6 5,612,039 + -0.5 5,612,039 + -1.2 5,612,047 - +0.5 5,612,049 + -0.8 5,612,062 + -0.3 5,612,096 + -3.3 5,612,125 + -0.0 5,612,133 - -2.8 5,612,133 - -1.5 5,612,133 - -2.4 5,612,133 - -3.8 5,612,163 + -5.1 5,612,163 + -1.2 5,612,394 + BWI76_RS27045 0.27 -1.7 5,612,743 - BWI76_RS27045 0.56 -1.1 5,612,743 - BWI76_RS27045 0.56 -2.5 5,612,772 + BWI76_RS27045 0.59 -1.7 5,612,780 - BWI76_RS27045 0.60 -1.0 5,612,906 - BWI76_RS27045 0.70 -1.9 5,612,954 + BWI76_RS27045 0.74 -3.6
Or see this region's nucleotide sequence