Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27040

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27035 and BWI76_RS27040 overlap by 23 nucleotidesBWI76_RS27040 and BWI76_RS27045 are separated by 122 nucleotides BWI76_RS27035: BWI76_RS27035 - xylose ABC transporter ATP-binding protein, at 5,609,254 to 5,610,795 _RS27035 BWI76_RS27040: BWI76_RS27040 - xylose ABC transporter permease, at 5,610,773 to 5,611,954 _RS27040 BWI76_RS27045: BWI76_RS27045 - XylR family transcriptional regulator, at 5,612,077 to 5,613,255 _RS27045 Position (kb) 5610 5611 5612Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5609.781 kb on + strand, within BWI76_RS27035at 5609.865 kb on + strand, within BWI76_RS27035at 5609.865 kb on + strand, within BWI76_RS27035at 5609.873 kb on - strand, within BWI76_RS27035at 5609.875 kb on + strand, within BWI76_RS27035at 5609.877 kb on + strand, within BWI76_RS27035at 5609.893 kb on - strand, within BWI76_RS27035at 5609.898 kb on + strand, within BWI76_RS27035at 5609.972 kb on + strand, within BWI76_RS27035at 5609.980 kb on - strand, within BWI76_RS27035at 5609.987 kb on + strand, within BWI76_RS27035at 5610.004 kb on + strand, within BWI76_RS27035at 5610.004 kb on + strand, within BWI76_RS27035at 5610.012 kb on - strand, within BWI76_RS27035at 5610.138 kb on + strand, within BWI76_RS27035at 5610.141 kb on - strand, within BWI76_RS27035at 5610.239 kb on + strand, within BWI76_RS27035at 5610.312 kb on + strand, within BWI76_RS27035at 5610.377 kb on + strand, within BWI76_RS27035at 5610.377 kb on + strand, within BWI76_RS27035at 5610.385 kb on - strand, within BWI76_RS27035at 5610.385 kb on - strand, within BWI76_RS27035at 5610.394 kb on + strand, within BWI76_RS27035at 5610.638 kb on + strand, within BWI76_RS27035at 5610.727 kb on - strandat 5610.727 kb on - strandat 5610.731 kb on + strandat 5610.762 kb on - strandat 5610.849 kb on + strandat 5610.886 kb on - strandat 5610.955 kb on + strand, within BWI76_RS27040at 5610.998 kb on - strand, within BWI76_RS27040at 5611.131 kb on - strand, within BWI76_RS27040at 5611.248 kb on + strand, within BWI76_RS27040at 5611.267 kb on - strand, within BWI76_RS27040at 5611.379 kb on - strand, within BWI76_RS27040at 5611.399 kb on + strand, within BWI76_RS27040at 5611.399 kb on + strand, within BWI76_RS27040at 5611.695 kb on + strand, within BWI76_RS27040at 5611.778 kb on + strand, within BWI76_RS27040at 5611.786 kb on - strand, within BWI76_RS27040at 5611.843 kb on + strandat 5611.843 kb on + strandat 5611.936 kb on - strandat 5611.951 kb on - strandat 5611.958 kb on - strandat 5612.000 kb on - strandat 5612.039 kb on + strandat 5612.039 kb on + strandat 5612.047 kb on - strandat 5612.049 kb on + strandat 5612.062 kb on + strandat 5612.096 kb on + strandat 5612.125 kb on + strandat 5612.133 kb on - strandat 5612.133 kb on - strandat 5612.133 kb on - strandat 5612.133 kb on - strandat 5612.163 kb on + strandat 5612.163 kb on + strandat 5612.394 kb on + strand, within BWI76_RS27045at 5612.743 kb on - strand, within BWI76_RS27045at 5612.743 kb on - strand, within BWI76_RS27045at 5612.772 kb on + strand, within BWI76_RS27045at 5612.780 kb on - strand, within BWI76_RS27045at 5612.906 kb on - strand, within BWI76_RS27045at 5612.954 kb on + strand, within BWI76_RS27045

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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5,609,781 + BWI76_RS27035 0.34 -1.9
5,609,865 + BWI76_RS27035 0.40 -1.0
5,609,865 + BWI76_RS27035 0.40 -0.5
5,609,873 - BWI76_RS27035 0.40 -1.4
5,609,875 + BWI76_RS27035 0.40 +0.4
5,609,877 + BWI76_RS27035 0.40 -0.8
5,609,893 - BWI76_RS27035 0.41 +0.2
5,609,898 + BWI76_RS27035 0.42 -1.4
5,609,972 + BWI76_RS27035 0.47 -1.3
5,609,980 - BWI76_RS27035 0.47 +0.2
5,609,987 + BWI76_RS27035 0.48 +0.3
5,610,004 + BWI76_RS27035 0.49 -1.0
5,610,004 + BWI76_RS27035 0.49 -0.4
5,610,012 - BWI76_RS27035 0.49 +1.1
5,610,138 + BWI76_RS27035 0.57 -1.2
5,610,141 - BWI76_RS27035 0.58 -0.2
5,610,239 + BWI76_RS27035 0.64 -0.1
5,610,312 + BWI76_RS27035 0.69 -0.3
5,610,377 + BWI76_RS27035 0.73 -1.2
5,610,377 + BWI76_RS27035 0.73 -0.7
5,610,385 - BWI76_RS27035 0.73 -1.7
5,610,385 - BWI76_RS27035 0.73 -1.0
5,610,394 + BWI76_RS27035 0.74 +0.4
5,610,638 + BWI76_RS27035 0.90 +1.2
5,610,727 - +0.2
5,610,727 - -1.2
5,610,731 + -0.4
5,610,762 - -0.3
5,610,849 + -0.8
5,610,886 - -1.1
5,610,955 + BWI76_RS27040 0.15 -1.0
5,610,998 - BWI76_RS27040 0.19 -2.8
5,611,131 - BWI76_RS27040 0.30 -0.9
5,611,248 + BWI76_RS27040 0.40 -0.5
5,611,267 - BWI76_RS27040 0.42 -0.4
5,611,379 - BWI76_RS27040 0.51 -0.1
5,611,399 + BWI76_RS27040 0.53 -0.9
5,611,399 + BWI76_RS27040 0.53 -0.9
5,611,695 + BWI76_RS27040 0.78 +0.2
5,611,778 + BWI76_RS27040 0.85 -1.2
5,611,786 - BWI76_RS27040 0.86 -0.6
5,611,843 + -0.1
5,611,843 + -0.5
5,611,936 - +1.1
5,611,951 - -0.4
5,611,958 - -0.5
5,612,000 - -0.6
5,612,039 + -0.5
5,612,039 + -1.2
5,612,047 - +0.5
5,612,049 + -0.8
5,612,062 + -0.3
5,612,096 + -3.3
5,612,125 + -0.0
5,612,133 - -2.8
5,612,133 - -1.5
5,612,133 - -2.4
5,612,133 - -3.8
5,612,163 + -5.1
5,612,163 + -1.2
5,612,394 + BWI76_RS27045 0.27 -1.7
5,612,743 - BWI76_RS27045 0.56 -1.1
5,612,743 - BWI76_RS27045 0.56 -2.5
5,612,772 + BWI76_RS27045 0.59 -1.7
5,612,780 - BWI76_RS27045 0.60 -1.0
5,612,906 - BWI76_RS27045 0.70 -1.9
5,612,954 + BWI76_RS27045 0.74 -3.6

Or see this region's nucleotide sequence