Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27030 and BWI76_RS27035 are separated by 64 nucleotides BWI76_RS27035 and BWI76_RS27040 overlap by 23 nucleotides
BWI76_RS27030: BWI76_RS27030 - D-xylose transporter subunit XylF, at 5,608,197 to 5,609,189
_RS27030
BWI76_RS27035: BWI76_RS27035 - xylose ABC transporter ATP-binding protein, at 5,609,254 to 5,610,795
_RS27035
BWI76_RS27040: BWI76_RS27040 - xylose ABC transporter permease, at 5,610,773 to 5,611,954
_RS27040
Position (kb) 5609
5610
5611 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5608.271 kb on + strand at 5608.299 kb on - strand, within BWI76_RS27030 at 5608.311 kb on - strand, within BWI76_RS27030 at 5608.315 kb on + strand, within BWI76_RS27030 at 5608.323 kb on - strand, within BWI76_RS27030 at 5608.323 kb on - strand, within BWI76_RS27030 at 5608.323 kb on - strand, within BWI76_RS27030 at 5608.347 kb on + strand, within BWI76_RS27030 at 5608.360 kb on + strand, within BWI76_RS27030 at 5608.368 kb on + strand, within BWI76_RS27030 at 5608.368 kb on + strand, within BWI76_RS27030 at 5608.368 kb on - strand, within BWI76_RS27030 at 5608.376 kb on - strand, within BWI76_RS27030 at 5608.376 kb on - strand, within BWI76_RS27030 at 5608.377 kb on - strand, within BWI76_RS27030 at 5608.383 kb on + strand, within BWI76_RS27030 at 5608.383 kb on + strand, within BWI76_RS27030 at 5608.383 kb on + strand, within BWI76_RS27030 at 5608.391 kb on - strand, within BWI76_RS27030 at 5608.438 kb on + strand, within BWI76_RS27030 at 5608.446 kb on - strand, within BWI76_RS27030 at 5608.471 kb on + strand, within BWI76_RS27030 at 5608.471 kb on + strand, within BWI76_RS27030 at 5608.476 kb on + strand, within BWI76_RS27030 at 5608.476 kb on + strand, within BWI76_RS27030 at 5608.479 kb on - strand, within BWI76_RS27030 at 5608.479 kb on - strand, within BWI76_RS27030 at 5608.479 kb on - strand, within BWI76_RS27030 at 5608.479 kb on - strand, within BWI76_RS27030 at 5608.481 kb on + strand, within BWI76_RS27030 at 5608.481 kb on + strand, within BWI76_RS27030 at 5608.484 kb on - strand, within BWI76_RS27030 at 5608.484 kb on - strand, within BWI76_RS27030 at 5608.486 kb on - strand, within BWI76_RS27030 at 5608.489 kb on - strand, within BWI76_RS27030 at 5608.489 kb on - strand, within BWI76_RS27030 at 5608.497 kb on - strand, within BWI76_RS27030 at 5608.499 kb on + strand, within BWI76_RS27030 at 5608.513 kb on + strand, within BWI76_RS27030 at 5608.604 kb on + strand, within BWI76_RS27030 at 5608.612 kb on - strand, within BWI76_RS27030 at 5608.612 kb on - strand, within BWI76_RS27030 at 5608.628 kb on + strand, within BWI76_RS27030 at 5608.628 kb on + strand, within BWI76_RS27030 at 5608.636 kb on - strand, within BWI76_RS27030 at 5608.670 kb on + strand, within BWI76_RS27030 at 5608.678 kb on - strand, within BWI76_RS27030 at 5608.684 kb on - strand, within BWI76_RS27030 at 5608.685 kb on + strand, within BWI76_RS27030 at 5608.695 kb on + strand, within BWI76_RS27030 at 5608.695 kb on + strand, within BWI76_RS27030 at 5608.703 kb on - strand, within BWI76_RS27030 at 5608.708 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.709 kb on + strand, within BWI76_RS27030 at 5608.714 kb on + strand, within BWI76_RS27030 at 5608.714 kb on + strand, within BWI76_RS27030 at 5608.715 kb on + strand, within BWI76_RS27030 at 5608.717 kb on - strand, within BWI76_RS27030 at 5608.717 kb on - strand, within BWI76_RS27030 at 5608.717 kb on - strand, within BWI76_RS27030 at 5608.723 kb on - strand, within BWI76_RS27030 at 5608.764 kb on + strand, within BWI76_RS27030 at 5608.764 kb on + strand, within BWI76_RS27030 at 5608.764 kb on + strand, within BWI76_RS27030 at 5608.772 kb on - strand, within BWI76_RS27030 at 5608.772 kb on - strand, within BWI76_RS27030 at 5608.823 kb on + strand, within BWI76_RS27030 at 5608.831 kb on - strand, within BWI76_RS27030 at 5608.854 kb on - strand, within BWI76_RS27030 at 5608.854 kb on - strand, within BWI76_RS27030 at 5608.873 kb on + strand, within BWI76_RS27030 at 5608.883 kb on - strand, within BWI76_RS27030 at 5608.888 kb on - strand, within BWI76_RS27030 at 5608.918 kb on + strand, within BWI76_RS27030 at 5608.923 kb on + strand, within BWI76_RS27030 at 5608.938 kb on - strand, within BWI76_RS27030 at 5608.963 kb on - strand, within BWI76_RS27030 at 5608.985 kb on + strand, within BWI76_RS27030 at 5608.985 kb on + strand, within BWI76_RS27030 at 5608.993 kb on - strand, within BWI76_RS27030 at 5609.084 kb on + strand, within BWI76_RS27030 at 5609.161 kb on - strand at 5609.211 kb on - strand at 5609.217 kb on + strand at 5609.225 kb on - strand at 5609.249 kb on + strand at 5609.251 kb on + strand at 5609.259 kb on - strand at 5609.259 kb on - strand at 5609.284 kb on + strand at 5609.284 kb on + strand at 5609.319 kb on + strand at 5609.319 kb on + strand at 5609.331 kb on + strand at 5609.331 kb on + strand at 5609.331 kb on + strand at 5609.331 kb on + strand at 5609.331 kb on + strand at 5609.339 kb on - strand at 5609.339 kb on - strand at 5609.339 kb on - strand at 5609.339 kb on - strand at 5609.339 kb on - strand at 5609.339 kb on - strand at 5609.339 kb on - strand at 5609.363 kb on - strand at 5609.365 kb on + strand at 5609.391 kb on + strand at 5609.391 kb on + strand at 5609.399 kb on - strand at 5609.399 kb on - strand at 5609.408 kb on + strand at 5609.408 kb on + strand at 5609.416 kb on - strand, within BWI76_RS27035 at 5609.416 kb on - strand, within BWI76_RS27035 at 5609.416 kb on - strand, within BWI76_RS27035 at 5609.416 kb on - strand, within BWI76_RS27035 at 5609.459 kb on + strand, within BWI76_RS27035 at 5609.470 kb on + strand, within BWI76_RS27035 at 5609.470 kb on + strand, within BWI76_RS27035 at 5609.490 kb on + strand, within BWI76_RS27035 at 5609.498 kb on - strand, within BWI76_RS27035 at 5609.498 kb on - strand, within BWI76_RS27035 at 5609.505 kb on - strand, within BWI76_RS27035 at 5609.536 kb on + strand, within BWI76_RS27035 at 5609.612 kb on - strand, within BWI76_RS27035 at 5609.659 kb on + strand, within BWI76_RS27035 at 5609.678 kb on + strand, within BWI76_RS27035 at 5609.686 kb on - strand, within BWI76_RS27035 at 5609.686 kb on - strand, within BWI76_RS27035 at 5609.686 kb on - strand, within BWI76_RS27035 at 5609.711 kb on + strand, within BWI76_RS27035 at 5609.727 kb on - strand, within BWI76_RS27035 at 5609.758 kb on + strand, within BWI76_RS27035 at 5609.766 kb on - strand, within BWI76_RS27035 at 5609.781 kb on + strand, within BWI76_RS27035 at 5609.865 kb on + strand, within BWI76_RS27035 at 5609.865 kb on + strand, within BWI76_RS27035 at 5609.873 kb on - strand, within BWI76_RS27035 at 5609.875 kb on + strand, within BWI76_RS27035 at 5609.877 kb on + strand, within BWI76_RS27035 at 5609.893 kb on - strand, within BWI76_RS27035 at 5609.898 kb on + strand, within BWI76_RS27035 at 5609.972 kb on + strand, within BWI76_RS27035 at 5609.980 kb on - strand, within BWI76_RS27035 at 5609.987 kb on + strand, within BWI76_RS27035 at 5610.004 kb on + strand, within BWI76_RS27035 at 5610.004 kb on + strand, within BWI76_RS27035 at 5610.012 kb on - strand, within BWI76_RS27035 at 5610.138 kb on + strand, within BWI76_RS27035 at 5610.141 kb on - strand, within BWI76_RS27035 at 5610.239 kb on + strand, within BWI76_RS27035 at 5610.312 kb on + strand, within BWI76_RS27035 at 5610.377 kb on + strand, within BWI76_RS27035 at 5610.377 kb on + strand, within BWI76_RS27035 at 5610.385 kb on - strand, within BWI76_RS27035 at 5610.385 kb on - strand, within BWI76_RS27035 at 5610.394 kb on + strand, within BWI76_RS27035 at 5610.638 kb on + strand, within BWI76_RS27035 at 5610.727 kb on - strand at 5610.727 kb on - strand at 5610.731 kb on + strand at 5610.762 kb on - strand at 5610.849 kb on + strand at 5610.886 kb on - strand at 5610.955 kb on + strand, within BWI76_RS27040 at 5610.998 kb on - strand, within BWI76_RS27040 at 5611.131 kb on - strand, within BWI76_RS27040 at 5611.248 kb on + strand, within BWI76_RS27040 at 5611.267 kb on - strand, within BWI76_RS27040 at 5611.379 kb on - strand, within BWI76_RS27040 at 5611.399 kb on + strand, within BWI76_RS27040 at 5611.399 kb on + strand, within BWI76_RS27040 at 5611.695 kb on + strand, within BWI76_RS27040 at 5611.778 kb on + strand, within BWI76_RS27040 at 5611.786 kb on - strand, within BWI76_RS27040
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,608,271 + -0.4 5,608,299 - BWI76_RS27030 0.10 -2.3 5,608,311 - BWI76_RS27030 0.11 -0.2 5,608,315 + BWI76_RS27030 0.12 +0.1 5,608,323 - BWI76_RS27030 0.13 -0.9 5,608,323 - BWI76_RS27030 0.13 -0.8 5,608,323 - BWI76_RS27030 0.13 -2.1 5,608,347 + BWI76_RS27030 0.15 -1.0 5,608,360 + BWI76_RS27030 0.16 +0.2 5,608,368 + BWI76_RS27030 0.17 -1.1 5,608,368 + BWI76_RS27030 0.17 -3.3 5,608,368 - BWI76_RS27030 0.17 -1.1 5,608,376 - BWI76_RS27030 0.18 -1.2 5,608,376 - BWI76_RS27030 0.18 -2.1 5,608,377 - BWI76_RS27030 0.18 +0.5 5,608,383 + BWI76_RS27030 0.19 -1.0 5,608,383 + BWI76_RS27030 0.19 -0.5 5,608,383 + BWI76_RS27030 0.19 -0.9 5,608,391 - BWI76_RS27030 0.20 -0.1 5,608,438 + BWI76_RS27030 0.24 +1.0 5,608,446 - BWI76_RS27030 0.25 -1.5 5,608,471 + BWI76_RS27030 0.28 +0.1 5,608,471 + BWI76_RS27030 0.28 +0.1 5,608,476 + BWI76_RS27030 0.28 -1.3 5,608,476 + BWI76_RS27030 0.28 -2.6 5,608,479 - BWI76_RS27030 0.28 -0.4 5,608,479 - BWI76_RS27030 0.28 -1.6 5,608,479 - BWI76_RS27030 0.28 -0.6 5,608,479 - BWI76_RS27030 0.28 -0.2 5,608,481 + BWI76_RS27030 0.29 -0.3 5,608,481 + BWI76_RS27030 0.29 -0.7 5,608,484 - BWI76_RS27030 0.29 +0.2 5,608,484 - BWI76_RS27030 0.29 -0.7 5,608,486 - BWI76_RS27030 0.29 -0.1 5,608,489 - BWI76_RS27030 0.29 -0.4 5,608,489 - BWI76_RS27030 0.29 -1.1 5,608,497 - BWI76_RS27030 0.30 -1.8 5,608,499 + BWI76_RS27030 0.30 -2.0 5,608,513 + BWI76_RS27030 0.32 -0.4 5,608,604 + BWI76_RS27030 0.41 -1.8 5,608,612 - BWI76_RS27030 0.42 -2.0 5,608,612 - BWI76_RS27030 0.42 -0.1 5,608,628 + BWI76_RS27030 0.43 +1.1 5,608,628 + BWI76_RS27030 0.43 -0.3 5,608,636 - BWI76_RS27030 0.44 +0.8 5,608,670 + BWI76_RS27030 0.48 +0.6 5,608,678 - BWI76_RS27030 0.48 +0.9 5,608,684 - BWI76_RS27030 0.49 -0.9 5,608,685 + BWI76_RS27030 0.49 -1.1 5,608,695 + BWI76_RS27030 0.50 -1.1 5,608,695 + BWI76_RS27030 0.50 -0.9 5,608,703 - BWI76_RS27030 0.51 -0.6 5,608,708 + BWI76_RS27030 0.51 +0.2 5,608,709 + BWI76_RS27030 0.52 -1.4 5,608,709 + BWI76_RS27030 0.52 -1.3 5,608,709 + BWI76_RS27030 0.52 +0.2 5,608,709 + BWI76_RS27030 0.52 -0.8 5,608,709 + BWI76_RS27030 0.52 -0.9 5,608,709 + BWI76_RS27030 0.52 -0.7 5,608,709 + -0.0 5,608,709 + BWI76_RS27030 0.52 +0.9 5,608,709 + BWI76_RS27030 0.52 -1.1 5,608,709 + BWI76_RS27030 0.52 -1.2 5,608,709 + BWI76_RS27030 0.52 -0.9 5,608,709 + BWI76_RS27030 0.52 -1.3 5,608,714 + BWI76_RS27030 0.52 -1.4 5,608,714 + BWI76_RS27030 0.52 -0.8 5,608,715 + BWI76_RS27030 0.52 +0.7 5,608,717 - BWI76_RS27030 0.52 +1.1 5,608,717 - BWI76_RS27030 0.52 -0.7 5,608,717 - BWI76_RS27030 0.52 -1.6 5,608,723 - BWI76_RS27030 0.53 +0.3 5,608,764 + BWI76_RS27030 0.57 -2.4 5,608,764 + BWI76_RS27030 0.57 -1.3 5,608,764 + BWI76_RS27030 0.57 -1.2 5,608,772 - BWI76_RS27030 0.58 -0.6 5,608,772 - BWI76_RS27030 0.58 -0.5 5,608,823 + BWI76_RS27030 0.63 -0.9 5,608,831 - BWI76_RS27030 0.64 -1.6 5,608,854 - BWI76_RS27030 0.66 +0.6 5,608,854 - BWI76_RS27030 0.66 -0.0 5,608,873 + BWI76_RS27030 0.68 -0.4 5,608,883 - BWI76_RS27030 0.69 -0.5 5,608,888 - BWI76_RS27030 0.70 +0.7 5,608,918 + BWI76_RS27030 0.73 -0.6 5,608,923 + BWI76_RS27030 0.73 -0.4 5,608,938 - BWI76_RS27030 0.75 -1.2 5,608,963 - BWI76_RS27030 0.77 -0.3 5,608,985 + BWI76_RS27030 0.79 -0.2 5,608,985 + BWI76_RS27030 0.79 -0.7 5,608,993 - BWI76_RS27030 0.80 -1.0 5,609,084 + BWI76_RS27030 0.89 -0.2 5,609,161 - -0.1 5,609,211 - +1.1 5,609,217 + -0.0 5,609,225 - -0.5 5,609,249 + +0.2 5,609,251 + -1.4 5,609,259 - -1.4 5,609,259 - -0.0 5,609,284 + -1.7 5,609,284 + -1.2 5,609,319 + -0.6 5,609,319 + -0.5 5,609,331 + +0.3 5,609,331 + +2.2 5,609,331 + -1.0 5,609,331 + -1.5 5,609,331 + -1.0 5,609,339 - -1.0 5,609,339 - -0.6 5,609,339 - -0.7 5,609,339 - +0.2 5,609,339 - -0.7 5,609,339 - -1.7 5,609,339 - -0.4 5,609,363 - +0.8 5,609,365 + -1.4 5,609,391 + -1.9 5,609,391 + -0.4 5,609,399 - +0.6 5,609,399 - -0.2 5,609,408 + +2.2 5,609,408 + -1.1 5,609,416 - BWI76_RS27035 0.11 -1.2 5,609,416 - BWI76_RS27035 0.11 -1.3 5,609,416 - BWI76_RS27035 0.11 -2.9 5,609,416 - BWI76_RS27035 0.11 -1.3 5,609,459 + BWI76_RS27035 0.13 -1.3 5,609,470 + BWI76_RS27035 0.14 +0.0 5,609,470 + BWI76_RS27035 0.14 -1.2 5,609,490 + BWI76_RS27035 0.15 -0.3 5,609,498 - BWI76_RS27035 0.16 -0.9 5,609,498 - BWI76_RS27035 0.16 -0.7 5,609,505 - BWI76_RS27035 0.16 -1.5 5,609,536 + BWI76_RS27035 0.18 -0.1 5,609,612 - BWI76_RS27035 0.23 -0.4 5,609,659 + BWI76_RS27035 0.26 -0.0 5,609,678 + BWI76_RS27035 0.27 -1.3 5,609,686 - BWI76_RS27035 0.28 -0.1 5,609,686 - BWI76_RS27035 0.28 -0.6 5,609,686 - BWI76_RS27035 0.28 -0.8 5,609,711 + BWI76_RS27035 0.30 -0.3 5,609,727 - BWI76_RS27035 0.31 -0.1 5,609,758 + BWI76_RS27035 0.33 +0.1 5,609,766 - BWI76_RS27035 0.33 -0.0 5,609,781 + BWI76_RS27035 0.34 -1.9 5,609,865 + BWI76_RS27035 0.40 -1.0 5,609,865 + BWI76_RS27035 0.40 -0.5 5,609,873 - BWI76_RS27035 0.40 -1.4 5,609,875 + BWI76_RS27035 0.40 +0.4 5,609,877 + BWI76_RS27035 0.40 -0.8 5,609,893 - BWI76_RS27035 0.41 +0.2 5,609,898 + BWI76_RS27035 0.42 -1.4 5,609,972 + BWI76_RS27035 0.47 -1.3 5,609,980 - BWI76_RS27035 0.47 +0.2 5,609,987 + BWI76_RS27035 0.48 +0.3 5,610,004 + BWI76_RS27035 0.49 -1.0 5,610,004 + BWI76_RS27035 0.49 -0.4 5,610,012 - BWI76_RS27035 0.49 +1.1 5,610,138 + BWI76_RS27035 0.57 -1.2 5,610,141 - BWI76_RS27035 0.58 -0.2 5,610,239 + BWI76_RS27035 0.64 -0.1 5,610,312 + BWI76_RS27035 0.69 -0.3 5,610,377 + BWI76_RS27035 0.73 -1.2 5,610,377 + BWI76_RS27035 0.73 -0.7 5,610,385 - BWI76_RS27035 0.73 -1.7 5,610,385 - BWI76_RS27035 0.73 -1.0 5,610,394 + BWI76_RS27035 0.74 +0.4 5,610,638 + BWI76_RS27035 0.90 +1.2 5,610,727 - +0.2 5,610,727 - -1.2 5,610,731 + -0.4 5,610,762 - -0.3 5,610,849 + -0.8 5,610,886 - -1.1 5,610,955 + BWI76_RS27040 0.15 -1.0 5,610,998 - BWI76_RS27040 0.19 -2.8 5,611,131 - BWI76_RS27040 0.30 -0.9 5,611,248 + BWI76_RS27040 0.40 -0.5 5,611,267 - BWI76_RS27040 0.42 -0.4 5,611,379 - BWI76_RS27040 0.51 -0.1 5,611,399 + BWI76_RS27040 0.53 -0.9 5,611,399 + BWI76_RS27040 0.53 -0.9 5,611,695 + BWI76_RS27040 0.78 +0.2 5,611,778 + BWI76_RS27040 0.85 -1.2 5,611,786 - BWI76_RS27040 0.86 -0.6
Or see this region's nucleotide sequence