Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23660

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23650 and BWI76_RS23655 are separated by 112 nucleotidesBWI76_RS23655 and BWI76_RS23660 are separated by 47 nucleotidesBWI76_RS23660 and BWI76_RS23665 are separated by 53 nucleotides BWI76_RS23650: BWI76_RS23650 - MFS transporter, at 4,935,428 to 4,936,975 _RS23650 BWI76_RS23655: BWI76_RS23655 - DeoR family transcriptional regulator, at 4,937,088 to 4,937,861 _RS23655 BWI76_RS23660: BWI76_RS23660 - pentose kinase, at 4,937,909 to 4,939,414 _RS23660 BWI76_RS23665: BWI76_RS23665 - 2-deoxyribose-5-phosphate aldolase, at 4,939,468 to 4,940,217 _RS23665 Position (kb) 4937 4938 4939 4940Strain fitness (log2 ratio) -1 0 1 2at 4936.969 kb on - strandat 4936.985 kb on + strandat 4937.187 kb on - strand, within BWI76_RS23655at 4937.187 kb on - strand, within BWI76_RS23655at 4937.221 kb on + strand, within BWI76_RS23655at 4937.656 kb on + strand, within BWI76_RS23655at 4937.664 kb on - strand, within BWI76_RS23655at 4937.713 kb on - strand, within BWI76_RS23655at 4937.945 kb on + strandat 4937.988 kb on + strandat 4937.996 kb on - strandat 4938.292 kb on - strand, within BWI76_RS23660at 4938.293 kb on + strand, within BWI76_RS23660at 4938.301 kb on - strand, within BWI76_RS23660at 4938.301 kb on - strand, within BWI76_RS23660at 4938.529 kb on + strand, within BWI76_RS23660at 4938.669 kb on - strand, within BWI76_RS23660at 4938.781 kb on + strand, within BWI76_RS23660at 4939.262 kb on + strand, within BWI76_RS23660at 4939.279 kb on + strandat 4939.279 kb on + strandat 4939.287 kb on - strandat 4939.287 kb on - strandat 4939.828 kb on + strand, within BWI76_RS23665at 4939.857 kb on - strand, within BWI76_RS23665at 4939.879 kb on + strand, within BWI76_RS23665at 4940.000 kb on + strand, within BWI76_RS23665at 4940.042 kb on + strand, within BWI76_RS23665at 4940.088 kb on + strand, within BWI76_RS23665at 4940.093 kb on + strand, within BWI76_RS23665at 4940.133 kb on - strand, within BWI76_RS23665at 4940.133 kb on - strand, within BWI76_RS23665at 4940.331 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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4,936,969 - -0.3
4,936,985 + +0.3
4,937,187 - BWI76_RS23655 0.13 -0.4
4,937,187 - BWI76_RS23655 0.13 -0.2
4,937,221 + BWI76_RS23655 0.17 -0.2
4,937,656 + BWI76_RS23655 0.73 -0.3
4,937,664 - BWI76_RS23655 0.74 -0.2
4,937,713 - BWI76_RS23655 0.81 -0.3
4,937,945 + -0.3
4,937,988 + +0.2
4,937,996 - +0.0
4,938,292 - BWI76_RS23660 0.25 -0.2
4,938,293 + BWI76_RS23660 0.25 -0.1
4,938,301 - BWI76_RS23660 0.26 -0.1
4,938,301 - BWI76_RS23660 0.26 -0.2
4,938,529 + BWI76_RS23660 0.41 -0.4
4,938,669 - BWI76_RS23660 0.50 +0.2
4,938,781 + BWI76_RS23660 0.58 -0.6
4,939,262 + BWI76_RS23660 0.90 +2.5
4,939,279 + -0.2
4,939,279 + +0.8
4,939,287 - -0.4
4,939,287 - +0.1
4,939,828 + BWI76_RS23665 0.48 +0.5
4,939,857 - BWI76_RS23665 0.52 +0.2
4,939,879 + BWI76_RS23665 0.55 -0.3
4,940,000 + BWI76_RS23665 0.71 -0.7
4,940,042 + BWI76_RS23665 0.77 +0.2
4,940,088 + BWI76_RS23665 0.83 +1.5
4,940,093 + BWI76_RS23665 0.83 -0.4
4,940,133 - BWI76_RS23665 0.89 -0.4
4,940,133 - BWI76_RS23665 0.89 +0.5
4,940,331 - -0.4

Or see this region's nucleotide sequence