Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22180 and BWI76_RS22185 are separated by 80 nucleotides BWI76_RS22185 and BWI76_RS22190 are separated by 203 nucleotides BWI76_RS22190 and BWI76_RS22195 are separated by 57 nucleotides BWI76_RS22195 and BWI76_RS22200 are separated by 8 nucleotides
BWI76_RS22180: BWI76_RS22180 - recombinase RecA, at 4,626,034 to 4,627,092
_RS22180
BWI76_RS22185: BWI76_RS22185 - hypothetical protein, at 4,627,173 to 4,627,670
_RS22185
BWI76_RS22190: BWI76_RS22190 - hypothetical protein, at 4,627,874 to 4,628,066
_RS22190
BWI76_RS22195: BWI76_RS22195 - metal ABC transporter substrate-binding protein, at 4,628,124 to 4,629,002
_RS22195
BWI76_RS22200: BWI76_RS22200 - iron ABC transporter, at 4,629,011 to 4,629,874
_RS22200
Position (kb) 4627
4628
4629 Strain fitness (log2 ratio) -1
0
1 at 4627.279 kb on - strand, within BWI76_RS22185 at 4627.346 kb on - strand, within BWI76_RS22185 at 4627.587 kb on - strand, within BWI76_RS22185 at 4627.894 kb on - strand, within BWI76_RS22190 at 4627.901 kb on - strand, within BWI76_RS22190 at 4627.949 kb on - strand, within BWI76_RS22190 at 4627.967 kb on - strand, within BWI76_RS22190 at 4628.001 kb on + strand, within BWI76_RS22190 at 4628.001 kb on + strand, within BWI76_RS22190 at 4628.002 kb on - strand, within BWI76_RS22190 at 4628.002 kb on - strand, within BWI76_RS22190 at 4628.002 kb on - strand, within BWI76_RS22190 at 4628.009 kb on - strand, within BWI76_RS22190 at 4628.150 kb on + strand at 4628.172 kb on + strand at 4628.223 kb on - strand, within BWI76_RS22195 at 4628.227 kb on + strand, within BWI76_RS22195 at 4628.235 kb on - strand, within BWI76_RS22195 at 4628.278 kb on - strand, within BWI76_RS22195 at 4628.301 kb on + strand, within BWI76_RS22195 at 4628.325 kb on - strand, within BWI76_RS22195 at 4628.432 kb on + strand, within BWI76_RS22195 at 4628.432 kb on + strand, within BWI76_RS22195 at 4628.440 kb on - strand, within BWI76_RS22195 at 4628.442 kb on + strand, within BWI76_RS22195 at 4628.458 kb on - strand, within BWI76_RS22195 at 4628.481 kb on - strand, within BWI76_RS22195 at 4628.529 kb on - strand, within BWI76_RS22195 at 4628.531 kb on + strand, within BWI76_RS22195 at 4628.620 kb on + strand, within BWI76_RS22195 at 4628.628 kb on - strand, within BWI76_RS22195 at 4628.633 kb on - strand, within BWI76_RS22195 at 4628.718 kb on - strand, within BWI76_RS22195 at 4628.733 kb on - strand, within BWI76_RS22195 at 4628.756 kb on + strand, within BWI76_RS22195 at 4628.813 kb on - strand, within BWI76_RS22195 at 4628.819 kb on + strand, within BWI76_RS22195 at 4628.819 kb on + strand, within BWI76_RS22195 at 4628.827 kb on - strand, within BWI76_RS22195 at 4628.827 kb on - strand, within BWI76_RS22195 at 4628.827 kb on - strand, within BWI76_RS22195 at 4628.901 kb on + strand, within BWI76_RS22195 at 4628.902 kb on - strand, within BWI76_RS22195
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,627,279 - BWI76_RS22185 0.21 +0.4 4,627,346 - BWI76_RS22185 0.35 -0.3 4,627,587 - BWI76_RS22185 0.83 +0.4 4,627,894 - BWI76_RS22190 0.10 -0.8 4,627,901 - BWI76_RS22190 0.14 -0.7 4,627,949 - BWI76_RS22190 0.39 +0.0 4,627,967 - BWI76_RS22190 0.48 +0.3 4,628,001 + BWI76_RS22190 0.66 +0.3 4,628,001 + BWI76_RS22190 0.66 -0.5 4,628,002 - BWI76_RS22190 0.66 +0.1 4,628,002 - BWI76_RS22190 0.66 -0.1 4,628,002 - BWI76_RS22190 0.66 +0.3 4,628,009 - BWI76_RS22190 0.70 -1.1 4,628,150 + -0.1 4,628,172 + -0.1 4,628,223 - BWI76_RS22195 0.11 -0.2 4,628,227 + BWI76_RS22195 0.12 +0.6 4,628,235 - BWI76_RS22195 0.13 +0.0 4,628,278 - BWI76_RS22195 0.18 +0.4 4,628,301 + BWI76_RS22195 0.20 +0.0 4,628,325 - BWI76_RS22195 0.23 +0.8 4,628,432 + BWI76_RS22195 0.35 -0.2 4,628,432 + BWI76_RS22195 0.35 -0.5 4,628,440 - BWI76_RS22195 0.36 -0.0 4,628,442 + BWI76_RS22195 0.36 -0.2 4,628,458 - BWI76_RS22195 0.38 +0.2 4,628,481 - BWI76_RS22195 0.41 -0.3 4,628,529 - BWI76_RS22195 0.46 -0.3 4,628,531 + BWI76_RS22195 0.46 -0.4 4,628,620 + BWI76_RS22195 0.56 -0.1 4,628,628 - BWI76_RS22195 0.57 +0.4 4,628,633 - BWI76_RS22195 0.58 +0.5 4,628,718 - BWI76_RS22195 0.68 -0.8 4,628,733 - BWI76_RS22195 0.69 -0.3 4,628,756 + BWI76_RS22195 0.72 -0.4 4,628,813 - BWI76_RS22195 0.78 -1.2 4,628,819 + BWI76_RS22195 0.79 -0.1 4,628,819 + BWI76_RS22195 0.79 +0.3 4,628,827 - BWI76_RS22195 0.80 +0.3 4,628,827 - BWI76_RS22195 0.80 +0.5 4,628,827 - BWI76_RS22195 0.80 +1.6 4,628,901 + BWI76_RS22195 0.88 +0.3 4,628,902 - BWI76_RS22195 0.89 +1.6
Or see this region's nucleotide sequence