Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21445

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21440 and BWI76_RS21445 are separated by 127 nucleotidesBWI76_RS21445 and BWI76_RS21450 overlap by 4 nucleotides BWI76_RS21440: BWI76_RS21440 - ATP-dependent chaperone ClpB, at 4,490,443 to 4,493,016 _RS21440 BWI76_RS21445: BWI76_RS21445 - hypothetical protein, at 4,493,144 to 4,493,875 _RS21445 BWI76_RS21450: BWI76_RS21450 - 23S rRNA pseudouridine(1911/1915/1917) synthase, at 4,493,872 to 4,494,852 _RS21450 Position (kb) 4493 4494Strain fitness (log2 ratio) -3 -2 -1 0 1at 4492.194 kb on + strand, within BWI76_RS21440at 4492.326 kb on - strand, within BWI76_RS21440at 4492.487 kb on + strand, within BWI76_RS21440at 4492.487 kb on + strand, within BWI76_RS21440at 4492.487 kb on + strand, within BWI76_RS21440at 4492.487 kb on + strand, within BWI76_RS21440at 4492.487 kb on + strand, within BWI76_RS21440at 4492.495 kb on - strand, within BWI76_RS21440at 4492.495 kb on - strand, within BWI76_RS21440at 4492.495 kb on - strand, within BWI76_RS21440at 4492.495 kb on - strand, within BWI76_RS21440at 4492.495 kb on - strand, within BWI76_RS21440at 4492.495 kb on - strand, within BWI76_RS21440at 4492.495 kb on - strand, within BWI76_RS21440at 4492.627 kb on - strand, within BWI76_RS21440at 4492.740 kb on + strand, within BWI76_RS21440at 4492.740 kb on + strand, within BWI76_RS21440at 4492.748 kb on - strand, within BWI76_RS21440at 4492.748 kb on - strand, within BWI76_RS21440at 4492.748 kb on - strand, within BWI76_RS21440at 4492.798 kb on - strandat 4492.798 kb on - strandat 4492.818 kb on - strandat 4492.920 kb on - strandat 4492.973 kb on - strandat 4492.985 kb on - strandat 4493.082 kb on + strandat 4493.090 kb on + strandat 4493.090 kb on + strandat 4493.098 kb on - strandat 4493.142 kb on + strandat 4493.156 kb on + strandat 4493.232 kb on - strand, within BWI76_RS21445at 4493.386 kb on + strand, within BWI76_RS21445at 4493.413 kb on + strand, within BWI76_RS21445at 4494.068 kb on + strand, within BWI76_RS21450at 4494.244 kb on + strand, within BWI76_RS21450at 4494.284 kb on - strand, within BWI76_RS21450at 4494.452 kb on + strand, within BWI76_RS21450at 4494.835 kb on - strandat 4494.840 kb on - strandat 4494.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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4,492,194 + BWI76_RS21440 0.68 -1.0
4,492,326 - BWI76_RS21440 0.73 -0.5
4,492,487 + BWI76_RS21440 0.79 +1.6
4,492,487 + BWI76_RS21440 0.79 +0.0
4,492,487 + BWI76_RS21440 0.79 -0.0
4,492,487 + BWI76_RS21440 0.79 -0.4
4,492,487 + BWI76_RS21440 0.79 +0.0
4,492,495 - BWI76_RS21440 0.80 -0.1
4,492,495 - BWI76_RS21440 0.80 -0.3
4,492,495 - BWI76_RS21440 0.80 +0.1
4,492,495 - BWI76_RS21440 0.80 -0.3
4,492,495 - BWI76_RS21440 0.80 -0.4
4,492,495 - BWI76_RS21440 0.80 -0.3
4,492,495 - BWI76_RS21440 0.80 -0.6
4,492,627 - BWI76_RS21440 0.85 -1.2
4,492,740 + BWI76_RS21440 0.89 +1.0
4,492,740 + BWI76_RS21440 0.89 -0.3
4,492,748 - BWI76_RS21440 0.90 +0.3
4,492,748 - BWI76_RS21440 0.90 +0.0
4,492,748 - BWI76_RS21440 0.90 -0.8
4,492,798 - +0.0
4,492,798 - -1.5
4,492,818 - -0.8
4,492,920 - +0.3
4,492,973 - -0.1
4,492,985 - +0.6
4,493,082 + +1.1
4,493,090 + -0.4
4,493,090 + -0.4
4,493,098 - +1.2
4,493,142 + -0.2
4,493,156 + +0.6
4,493,232 - BWI76_RS21445 0.12 -0.2
4,493,386 + BWI76_RS21445 0.33 -1.1
4,493,413 + BWI76_RS21445 0.37 -0.8
4,494,068 + BWI76_RS21450 0.20 +1.4
4,494,244 + BWI76_RS21450 0.38 +0.4
4,494,284 - BWI76_RS21450 0.42 -1.1
4,494,452 + BWI76_RS21450 0.59 -2.4
4,494,835 - -0.4
4,494,840 - -0.8
4,494,842 - -3.1

Or see this region's nucleotide sequence