Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18370

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS18365 and BWI76_RS18370 are separated by 201 nucleotidesBWI76_RS18370 and BWI76_RS18375 are separated by 49 nucleotidesBWI76_RS18375 and BWI76_RS18380 are separated by 454 nucleotides BWI76_RS18365: BWI76_RS18365 - cystine ABC transporter substrate-binding protein, at 3,812,342 to 3,813,142 _RS18365 BWI76_RS18370: BWI76_RS18370 - alpha-amylase, at 3,813,344 to 3,814,831 _RS18370 BWI76_RS18375: BWI76_RS18375 - hypothetical protein, at 3,814,881 to 3,815,294 _RS18375 BWI76_RS18380: BWI76_RS18380 - helix-turn-helix transcriptional regulator, at 3,815,749 to 3,816,372 _RS18380 Position (kb) 3813 3814 3815Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3812.430 kb on + strand, within BWI76_RS18365at 3812.451 kb on + strand, within BWI76_RS18365at 3812.451 kb on + strand, within BWI76_RS18365at 3812.459 kb on - strand, within BWI76_RS18365at 3812.777 kb on - strand, within BWI76_RS18365at 3812.997 kb on - strand, within BWI76_RS18365at 3813.035 kb on - strand, within BWI76_RS18365at 3813.130 kb on - strandat 3813.183 kb on - strandat 3813.184 kb on + strandat 3813.267 kb on - strandat 3813.327 kb on + strandat 3813.330 kb on - strandat 3813.379 kb on + strandat 3813.466 kb on + strandat 3813.507 kb on + strand, within BWI76_RS18370at 3813.550 kb on + strand, within BWI76_RS18370at 3813.642 kb on + strand, within BWI76_RS18370at 3813.761 kb on + strand, within BWI76_RS18370at 3813.768 kb on - strand, within BWI76_RS18370at 3813.769 kb on - strand, within BWI76_RS18370at 3813.828 kb on + strand, within BWI76_RS18370at 3814.104 kb on - strand, within BWI76_RS18370at 3814.171 kb on + strand, within BWI76_RS18370at 3814.291 kb on + strand, within BWI76_RS18370at 3814.291 kb on + strand, within BWI76_RS18370at 3814.299 kb on - strand, within BWI76_RS18370at 3814.375 kb on + strand, within BWI76_RS18370at 3814.492 kb on + strand, within BWI76_RS18370at 3814.605 kb on - strand, within BWI76_RS18370at 3814.838 kb on + strandat 3814.929 kb on - strand, within BWI76_RS18375at 3815.114 kb on + strand, within BWI76_RS18375at 3815.114 kb on + strand, within BWI76_RS18375at 3815.122 kb on - strand, within BWI76_RS18375at 3815.149 kb on - strand, within BWI76_RS18375at 3815.173 kb on + strand, within BWI76_RS18375at 3815.259 kb on + strandat 3815.267 kb on - strandat 3815.267 kb on - strandat 3815.337 kb on + strandat 3815.345 kb on - strandat 3815.354 kb on - strandat 3815.470 kb on + strandat 3815.635 kb on + strandat 3815.638 kb on - strandat 3815.644 kb on + strandat 3815.644 kb on + strandat 3815.644 kb on + strandat 3815.644 kb on + strandat 3815.644 kb on + strandat 3815.652 kb on - strandat 3815.652 kb on - strandat 3815.748 kb on - strandat 3815.753 kb on - strandat 3815.777 kb on + strandat 3815.791 kb on + strandat 3815.797 kb on + strandat 3815.797 kb on + strandat 3815.798 kb on - strandat 3815.802 kb on + strandat 3815.814 kb on - strand, within BWI76_RS18380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
3,812,430 + BWI76_RS18365 0.11 -0.3
3,812,451 + BWI76_RS18365 0.14 -0.4
3,812,451 + BWI76_RS18365 0.14 -0.1
3,812,459 - BWI76_RS18365 0.15 +0.9
3,812,777 - BWI76_RS18365 0.54 +0.2
3,812,997 - BWI76_RS18365 0.82 +0.2
3,813,035 - BWI76_RS18365 0.87 -1.4
3,813,130 - +0.2
3,813,183 - -0.2
3,813,184 + +0.9
3,813,267 - +0.5
3,813,327 + +0.0
3,813,330 - +0.3
3,813,379 + -0.2
3,813,466 + +0.9
3,813,507 + BWI76_RS18370 0.11 -0.6
3,813,550 + BWI76_RS18370 0.14 -3.1
3,813,642 + BWI76_RS18370 0.20 +0.8
3,813,761 + BWI76_RS18370 0.28 +0.1
3,813,768 - BWI76_RS18370 0.28 -0.6
3,813,769 - BWI76_RS18370 0.29 +0.4
3,813,828 + BWI76_RS18370 0.33 -1.1
3,814,104 - BWI76_RS18370 0.51 +0.0
3,814,171 + BWI76_RS18370 0.56 -0.3
3,814,291 + BWI76_RS18370 0.64 +0.3
3,814,291 + BWI76_RS18370 0.64 +0.2
3,814,299 - BWI76_RS18370 0.64 -0.9
3,814,375 + BWI76_RS18370 0.69 +0.0
3,814,492 + BWI76_RS18370 0.77 -0.4
3,814,605 - BWI76_RS18370 0.85 +2.9
3,814,838 + +0.3
3,814,929 - BWI76_RS18375 0.12 +0.3
3,815,114 + BWI76_RS18375 0.56 +0.3
3,815,114 + BWI76_RS18375 0.56 -0.6
3,815,122 - BWI76_RS18375 0.58 +0.4
3,815,149 - BWI76_RS18375 0.65 -0.8
3,815,173 + BWI76_RS18375 0.71 +0.3
3,815,259 + -0.2
3,815,267 - +0.2
3,815,267 - +0.2
3,815,337 + +0.2
3,815,345 - -0.8
3,815,354 - -1.3
3,815,470 + -0.2
3,815,635 + -0.2
3,815,638 - +0.6
3,815,644 + -0.4
3,815,644 + +0.1
3,815,644 + +0.2
3,815,644 + +0.0
3,815,644 + +0.1
3,815,652 - -0.5
3,815,652 - -0.1
3,815,748 - -0.2
3,815,753 - +0.2
3,815,777 + -0.8
3,815,791 + -0.6
3,815,797 + -0.5
3,815,797 + -0.5
3,815,798 - -1.2
3,815,802 + -1.5
3,815,814 - BWI76_RS18380 0.10 +0.2

Or see this region's nucleotide sequence