Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18365 and BWI76_RS18370 are separated by 201 nucleotides BWI76_RS18370 and BWI76_RS18375 are separated by 49 nucleotides BWI76_RS18375 and BWI76_RS18380 are separated by 454 nucleotides
BWI76_RS18365: BWI76_RS18365 - cystine ABC transporter substrate-binding protein, at 3,812,342 to 3,813,142
_RS18365
BWI76_RS18370: BWI76_RS18370 - alpha-amylase, at 3,813,344 to 3,814,831
_RS18370
BWI76_RS18375: BWI76_RS18375 - hypothetical protein, at 3,814,881 to 3,815,294
_RS18375
BWI76_RS18380: BWI76_RS18380 - helix-turn-helix transcriptional regulator, at 3,815,749 to 3,816,372
_RS18380
Position (kb)
3813
3814
3815 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3812.430 kb on + strand, within BWI76_RS18365 at 3812.451 kb on + strand, within BWI76_RS18365 at 3812.451 kb on + strand, within BWI76_RS18365 at 3812.459 kb on - strand, within BWI76_RS18365 at 3812.777 kb on - strand, within BWI76_RS18365 at 3812.997 kb on - strand, within BWI76_RS18365 at 3813.035 kb on - strand, within BWI76_RS18365 at 3813.130 kb on - strand at 3813.183 kb on - strand at 3813.184 kb on + strand at 3813.267 kb on - strand at 3813.327 kb on + strand at 3813.330 kb on - strand at 3813.379 kb on + strand at 3813.466 kb on + strand at 3813.507 kb on + strand, within BWI76_RS18370 at 3813.550 kb on + strand, within BWI76_RS18370 at 3813.642 kb on + strand, within BWI76_RS18370 at 3813.761 kb on + strand, within BWI76_RS18370 at 3813.768 kb on - strand, within BWI76_RS18370 at 3813.769 kb on - strand, within BWI76_RS18370 at 3813.828 kb on + strand, within BWI76_RS18370 at 3814.104 kb on - strand, within BWI76_RS18370 at 3814.171 kb on + strand, within BWI76_RS18370 at 3814.291 kb on + strand, within BWI76_RS18370 at 3814.291 kb on + strand, within BWI76_RS18370 at 3814.299 kb on - strand, within BWI76_RS18370 at 3814.375 kb on + strand, within BWI76_RS18370 at 3814.492 kb on + strand, within BWI76_RS18370 at 3814.605 kb on - strand, within BWI76_RS18370 at 3814.838 kb on + strand at 3814.929 kb on - strand, within BWI76_RS18375 at 3815.114 kb on + strand, within BWI76_RS18375 at 3815.114 kb on + strand, within BWI76_RS18375 at 3815.122 kb on - strand, within BWI76_RS18375 at 3815.149 kb on - strand, within BWI76_RS18375 at 3815.173 kb on + strand, within BWI76_RS18375 at 3815.259 kb on + strand at 3815.267 kb on - strand at 3815.267 kb on - strand at 3815.337 kb on + strand at 3815.345 kb on - strand at 3815.354 kb on - strand at 3815.470 kb on + strand at 3815.635 kb on + strand at 3815.638 kb on - strand at 3815.644 kb on + strand at 3815.644 kb on + strand at 3815.644 kb on + strand at 3815.644 kb on + strand at 3815.644 kb on + strand at 3815.652 kb on - strand at 3815.652 kb on - strand at 3815.748 kb on - strand at 3815.753 kb on - strand at 3815.777 kb on + strand at 3815.791 kb on + strand at 3815.797 kb on + strand at 3815.797 kb on + strand at 3815.798 kb on - strand at 3815.802 kb on + strand at 3815.814 kb on - strand, within BWI76_RS18380
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,812,430 + BWI76_RS18365 0.11 -0.3 3,812,451 + BWI76_RS18365 0.14 -0.4 3,812,451 + BWI76_RS18365 0.14 -0.1 3,812,459 - BWI76_RS18365 0.15 +0.9 3,812,777 - BWI76_RS18365 0.54 +0.2 3,812,997 - BWI76_RS18365 0.82 +0.2 3,813,035 - BWI76_RS18365 0.87 -1.4 3,813,130 - +0.2 3,813,183 - -0.2 3,813,184 + +0.9 3,813,267 - +0.5 3,813,327 + +0.0 3,813,330 - +0.3 3,813,379 + -0.2 3,813,466 + +0.9 3,813,507 + BWI76_RS18370 0.11 -0.6 3,813,550 + BWI76_RS18370 0.14 -3.1 3,813,642 + BWI76_RS18370 0.20 +0.8 3,813,761 + BWI76_RS18370 0.28 +0.1 3,813,768 - BWI76_RS18370 0.28 -0.6 3,813,769 - BWI76_RS18370 0.29 +0.4 3,813,828 + BWI76_RS18370 0.33 -1.1 3,814,104 - BWI76_RS18370 0.51 +0.0 3,814,171 + BWI76_RS18370 0.56 -0.3 3,814,291 + BWI76_RS18370 0.64 +0.3 3,814,291 + BWI76_RS18370 0.64 +0.2 3,814,299 - BWI76_RS18370 0.64 -0.9 3,814,375 + BWI76_RS18370 0.69 +0.0 3,814,492 + BWI76_RS18370 0.77 -0.4 3,814,605 - BWI76_RS18370 0.85 +2.9 3,814,838 + +0.3 3,814,929 - BWI76_RS18375 0.12 +0.3 3,815,114 + BWI76_RS18375 0.56 +0.3 3,815,114 + BWI76_RS18375 0.56 -0.6 3,815,122 - BWI76_RS18375 0.58 +0.4 3,815,149 - BWI76_RS18375 0.65 -0.8 3,815,173 + BWI76_RS18375 0.71 +0.3 3,815,259 + -0.2 3,815,267 - +0.2 3,815,267 - +0.2 3,815,337 + +0.2 3,815,345 - -0.8 3,815,354 - -1.3 3,815,470 + -0.2 3,815,635 + -0.2 3,815,638 - +0.6 3,815,644 + -0.4 3,815,644 + +0.1 3,815,644 + +0.2 3,815,644 + +0.0 3,815,644 + +0.1 3,815,652 - -0.5 3,815,652 - -0.1 3,815,748 - -0.2 3,815,753 - +0.2 3,815,777 + -0.8 3,815,791 + -0.6 3,815,797 + -0.5 3,815,797 + -0.5 3,815,798 - -1.2 3,815,802 + -1.5 3,815,814 - BWI76_RS18380 0.10 +0.2
Or see this region's nucleotide sequence