Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14630 and BWI76_RS14635 are separated by 40 nucleotides BWI76_RS14635 and BWI76_RS14640 are separated by 159 nucleotides BWI76_RS14640 and BWI76_RS14645 overlap by 26 nucleotides
BWI76_RS14630: BWI76_RS14630 - TonB-dependent receptor, at 3,070,077 to 3,072,041
_RS14630
BWI76_RS14635: BWI76_RS14635 - receptor, at 3,072,082 to 3,073,140
_RS14635
BWI76_RS14640: BWI76_RS14640 - DNA-binding response regulator, at 3,073,300 to 3,073,887
_RS14640
BWI76_RS14645: BWI76_RS14645 - sensor histidine kinase, at 3,073,862 to 3,075,619
_RS14645
Position (kb)
3072
3073
3074 Strain fitness (log2 ratio)
-2
-1
0
1 at 3071.089 kb on - strand, within BWI76_RS14630 at 3071.204 kb on + strand, within BWI76_RS14630 at 3071.212 kb on - strand, within BWI76_RS14630 at 3071.262 kb on + strand, within BWI76_RS14630 at 3071.403 kb on + strand, within BWI76_RS14630 at 3071.574 kb on - strand, within BWI76_RS14630 at 3071.756 kb on + strand, within BWI76_RS14630 at 3071.785 kb on - strand, within BWI76_RS14630 at 3071.817 kb on + strand, within BWI76_RS14630 at 3071.876 kb on + strand at 3072.299 kb on + strand, within BWI76_RS14635 at 3072.307 kb on - strand, within BWI76_RS14635 at 3072.312 kb on - strand, within BWI76_RS14635 at 3072.422 kb on - strand, within BWI76_RS14635 at 3072.427 kb on - strand, within BWI76_RS14635 at 3072.432 kb on - strand, within BWI76_RS14635 at 3072.547 kb on + strand, within BWI76_RS14635 at 3072.547 kb on - strand, within BWI76_RS14635 at 3072.640 kb on - strand, within BWI76_RS14635 at 3072.643 kb on + strand, within BWI76_RS14635 at 3072.743 kb on + strand, within BWI76_RS14635 at 3072.770 kb on + strand, within BWI76_RS14635 at 3073.115 kb on + strand at 3073.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,071,089 - BWI76_RS14630 0.52 -0.2 3,071,204 + BWI76_RS14630 0.57 -0.5 3,071,212 - BWI76_RS14630 0.58 +0.3 3,071,262 + BWI76_RS14630 0.60 +0.2 3,071,403 + BWI76_RS14630 0.67 -0.8 3,071,574 - BWI76_RS14630 0.76 +0.4 3,071,756 + BWI76_RS14630 0.85 -0.1 3,071,785 - BWI76_RS14630 0.87 -0.1 3,071,817 + BWI76_RS14630 0.89 +1.0 3,071,876 + -0.5 3,072,299 + BWI76_RS14635 0.20 -1.3 3,072,307 - BWI76_RS14635 0.21 +0.0 3,072,312 - BWI76_RS14635 0.22 -0.5 3,072,422 - BWI76_RS14635 0.32 -0.2 3,072,427 - BWI76_RS14635 0.33 -1.0 3,072,432 - BWI76_RS14635 0.33 -0.2 3,072,547 + BWI76_RS14635 0.44 -0.9 3,072,547 - BWI76_RS14635 0.44 -1.7 3,072,640 - BWI76_RS14635 0.53 -0.6 3,072,643 + BWI76_RS14635 0.53 -0.3 3,072,743 + BWI76_RS14635 0.62 -2.5 3,072,770 + BWI76_RS14635 0.65 -0.4 3,073,115 + +0.7 3,073,296 - -0.5
Or see this region's nucleotide sequence