Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14635

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14630 and BWI76_RS14635 are separated by 40 nucleotidesBWI76_RS14635 and BWI76_RS14640 are separated by 159 nucleotidesBWI76_RS14640 and BWI76_RS14645 overlap by 26 nucleotides BWI76_RS14630: BWI76_RS14630 - TonB-dependent receptor, at 3,070,077 to 3,072,041 _RS14630 BWI76_RS14635: BWI76_RS14635 - receptor, at 3,072,082 to 3,073,140 _RS14635 BWI76_RS14640: BWI76_RS14640 - DNA-binding response regulator, at 3,073,300 to 3,073,887 _RS14640 BWI76_RS14645: BWI76_RS14645 - sensor histidine kinase, at 3,073,862 to 3,075,619 _RS14645 Position (kb) 3072 3073 3074Strain fitness (log2 ratio) -2 -1 0 1at 3071.089 kb on - strand, within BWI76_RS14630at 3071.204 kb on + strand, within BWI76_RS14630at 3071.212 kb on - strand, within BWI76_RS14630at 3071.262 kb on + strand, within BWI76_RS14630at 3071.403 kb on + strand, within BWI76_RS14630at 3071.574 kb on - strand, within BWI76_RS14630at 3071.756 kb on + strand, within BWI76_RS14630at 3071.785 kb on - strand, within BWI76_RS14630at 3071.817 kb on + strand, within BWI76_RS14630at 3071.876 kb on + strandat 3072.299 kb on + strand, within BWI76_RS14635at 3072.307 kb on - strand, within BWI76_RS14635at 3072.312 kb on - strand, within BWI76_RS14635at 3072.422 kb on - strand, within BWI76_RS14635at 3072.427 kb on - strand, within BWI76_RS14635at 3072.432 kb on - strand, within BWI76_RS14635at 3072.547 kb on + strand, within BWI76_RS14635at 3072.547 kb on - strand, within BWI76_RS14635at 3072.640 kb on - strand, within BWI76_RS14635at 3072.643 kb on + strand, within BWI76_RS14635at 3072.743 kb on + strand, within BWI76_RS14635at 3072.770 kb on + strand, within BWI76_RS14635at 3073.115 kb on + strandat 3073.296 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,071,089 - BWI76_RS14630 0.52 -0.2
3,071,204 + BWI76_RS14630 0.57 -0.5
3,071,212 - BWI76_RS14630 0.58 +0.3
3,071,262 + BWI76_RS14630 0.60 +0.2
3,071,403 + BWI76_RS14630 0.67 -0.8
3,071,574 - BWI76_RS14630 0.76 +0.4
3,071,756 + BWI76_RS14630 0.85 -0.1
3,071,785 - BWI76_RS14630 0.87 -0.1
3,071,817 + BWI76_RS14630 0.89 +1.0
3,071,876 + -0.5
3,072,299 + BWI76_RS14635 0.20 -1.3
3,072,307 - BWI76_RS14635 0.21 +0.0
3,072,312 - BWI76_RS14635 0.22 -0.5
3,072,422 - BWI76_RS14635 0.32 -0.2
3,072,427 - BWI76_RS14635 0.33 -1.0
3,072,432 - BWI76_RS14635 0.33 -0.2
3,072,547 + BWI76_RS14635 0.44 -0.9
3,072,547 - BWI76_RS14635 0.44 -1.7
3,072,640 - BWI76_RS14635 0.53 -0.6
3,072,643 + BWI76_RS14635 0.53 -0.3
3,072,743 + BWI76_RS14635 0.62 -2.5
3,072,770 + BWI76_RS14635 0.65 -0.4
3,073,115 + +0.7
3,073,296 - -0.5

Or see this region's nucleotide sequence