Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06690

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06685 and BWI76_RS06690 are separated by 243 nucleotidesBWI76_RS06690 and BWI76_RS06695 are separated by 353 nucleotides BWI76_RS06685: BWI76_RS06685 - cyclic diguanylate phosphodiesterase (EAL) domain-containing protein, at 1,400,525 to 1,402,111 _RS06685 BWI76_RS06690: BWI76_RS06690 - ABC transporter ATP-binding protein, at 1,402,355 to 1,403,464 _RS06690 BWI76_RS06695: BWI76_RS06695 - ABC transporter substrate-binding protein, at 1,403,818 to 1,405,050 _RS06695 Position (kb) 1402 1403 1404Strain fitness (log2 ratio) -2 -1 0 1 2at 1401.459 kb on + strand, within BWI76_RS06685at 1401.482 kb on + strand, within BWI76_RS06685at 1401.482 kb on + strand, within BWI76_RS06685at 1401.496 kb on - strand, within BWI76_RS06685at 1401.544 kb on + strand, within BWI76_RS06685at 1401.772 kb on - strand, within BWI76_RS06685at 1401.784 kb on + strand, within BWI76_RS06685at 1401.784 kb on + strand, within BWI76_RS06685at 1401.860 kb on + strand, within BWI76_RS06685at 1401.986 kb on + strandat 1401.996 kb on + strandat 1402.004 kb on - strandat 1402.144 kb on - strandat 1402.154 kb on - strandat 1402.187 kb on - strandat 1402.250 kb on + strandat 1402.290 kb on - strandat 1402.383 kb on + strandat 1402.514 kb on - strand, within BWI76_RS06690at 1402.514 kb on - strand, within BWI76_RS06690at 1402.519 kb on - strand, within BWI76_RS06690at 1402.683 kb on - strand, within BWI76_RS06690at 1402.706 kb on - strand, within BWI76_RS06690at 1402.883 kb on - strand, within BWI76_RS06690at 1402.896 kb on + strand, within BWI76_RS06690at 1402.982 kb on - strand, within BWI76_RS06690at 1403.053 kb on + strand, within BWI76_RS06690at 1403.058 kb on + strand, within BWI76_RS06690at 1403.152 kb on - strand, within BWI76_RS06690at 1403.209 kb on + strand, within BWI76_RS06690at 1403.284 kb on + strand, within BWI76_RS06690at 1403.295 kb on - strand, within BWI76_RS06690at 1403.394 kb on + strandat 1403.424 kb on - strandat 1403.978 kb on + strand, within BWI76_RS06695at 1404.203 kb on - strand, within BWI76_RS06695at 1404.323 kb on - strand, within BWI76_RS06695at 1404.386 kb on + strand, within BWI76_RS06695at 1404.436 kb on + strand, within BWI76_RS06695

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
1,401,459 + BWI76_RS06685 0.59 +0.8
1,401,482 + BWI76_RS06685 0.60 -1.2
1,401,482 + BWI76_RS06685 0.60 -0.7
1,401,496 - BWI76_RS06685 0.61 +2.1
1,401,544 + BWI76_RS06685 0.64 -0.7
1,401,772 - BWI76_RS06685 0.79 +0.1
1,401,784 + BWI76_RS06685 0.79 +0.1
1,401,784 + BWI76_RS06685 0.79 -0.1
1,401,860 + BWI76_RS06685 0.84 -0.3
1,401,986 + -1.4
1,401,996 + -0.8
1,402,004 - -0.6
1,402,144 - -0.4
1,402,154 - +1.4
1,402,187 - +0.1
1,402,250 + -0.2
1,402,290 - -0.6
1,402,383 + +0.4
1,402,514 - BWI76_RS06690 0.14 +0.8
1,402,514 - BWI76_RS06690 0.14 -0.7
1,402,519 - BWI76_RS06690 0.15 +2.1
1,402,683 - BWI76_RS06690 0.30 -0.2
1,402,706 - BWI76_RS06690 0.32 -0.5
1,402,883 - BWI76_RS06690 0.48 -1.5
1,402,896 + BWI76_RS06690 0.49 -0.4
1,402,982 - BWI76_RS06690 0.56 +0.4
1,403,053 + BWI76_RS06690 0.63 -1.0
1,403,058 + BWI76_RS06690 0.63 -0.6
1,403,152 - BWI76_RS06690 0.72 -0.2
1,403,209 + BWI76_RS06690 0.77 -0.3
1,403,284 + BWI76_RS06690 0.84 +0.0
1,403,295 - BWI76_RS06690 0.85 -0.1
1,403,394 + +0.8
1,403,424 - -0.8
1,403,978 + BWI76_RS06695 0.13 -0.6
1,404,203 - BWI76_RS06695 0.31 -0.1
1,404,323 - BWI76_RS06695 0.41 -0.5
1,404,386 + BWI76_RS06695 0.46 -0.4
1,404,436 + BWI76_RS06695 0.50 -1.8

Or see this region's nucleotide sequence