Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06425

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06420 and BWI76_RS06425 are separated by 92 nucleotidesBWI76_RS06425 and BWI76_RS06430 overlap by 2 nucleotidesBWI76_RS06430 and BWI76_RS06435 are separated by 229 nucleotides BWI76_RS06420: BWI76_RS06420 - oxidoreductase, at 1,349,071 to 1,350,249 _RS06420 BWI76_RS06425: BWI76_RS06425 - MFS transporter, at 1,350,342 to 1,351,742 _RS06425 BWI76_RS06430: BWI76_RS06430 - hypothetical protein, at 1,351,741 to 1,351,920 _RS06430 BWI76_RS06435: BWI76_RS06435 - MFS transporter, at 1,352,150 to 1,353,514 _RS06435 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -1 0 1at 1349.364 kb on - strand, within BWI76_RS06420at 1349.387 kb on - strand, within BWI76_RS06420at 1349.455 kb on + strand, within BWI76_RS06420at 1349.463 kb on - strand, within BWI76_RS06420at 1349.497 kb on + strand, within BWI76_RS06420at 1349.511 kb on + strand, within BWI76_RS06420at 1349.638 kb on + strand, within BWI76_RS06420at 1350.060 kb on - strand, within BWI76_RS06420at 1350.194 kb on + strandat 1350.223 kb on + strandat 1350.223 kb on + strandat 1350.367 kb on - strandat 1350.578 kb on - strand, within BWI76_RS06425at 1350.686 kb on - strand, within BWI76_RS06425at 1350.809 kb on + strand, within BWI76_RS06425at 1350.817 kb on - strand, within BWI76_RS06425at 1350.995 kb on - strand, within BWI76_RS06425at 1351.164 kb on - strand, within BWI76_RS06425at 1351.189 kb on + strand, within BWI76_RS06425at 1351.290 kb on + strand, within BWI76_RS06425at 1351.549 kb on - strand, within BWI76_RS06425at 1351.605 kb on - strandat 1351.769 kb on + strandat 1351.770 kb on + strand, within BWI76_RS06430at 1351.778 kb on - strand, within BWI76_RS06430at 1351.788 kb on - strand, within BWI76_RS06430at 1351.802 kb on + strand, within BWI76_RS06430at 1351.802 kb on + strand, within BWI76_RS06430at 1351.810 kb on - strand, within BWI76_RS06430at 1351.810 kb on - strand, within BWI76_RS06430at 1351.810 kb on - strand, within BWI76_RS06430at 1351.942 kb on - strandat 1351.944 kb on - strandat 1351.959 kb on + strandat 1352.168 kb on - strandat 1352.391 kb on + strand, within BWI76_RS06435at 1352.435 kb on + strand, within BWI76_RS06435at 1352.564 kb on - strand, within BWI76_RS06435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
1,349,364 - BWI76_RS06420 0.25 -0.4
1,349,387 - BWI76_RS06420 0.27 -0.6
1,349,455 + BWI76_RS06420 0.33 -0.6
1,349,463 - BWI76_RS06420 0.33 -0.9
1,349,497 + BWI76_RS06420 0.36 -1.7
1,349,511 + BWI76_RS06420 0.37 -0.8
1,349,638 + BWI76_RS06420 0.48 -1.0
1,350,060 - BWI76_RS06420 0.84 -0.4
1,350,194 + -0.2
1,350,223 + +0.2
1,350,223 + -0.4
1,350,367 - -0.3
1,350,578 - BWI76_RS06425 0.17 -0.9
1,350,686 - BWI76_RS06425 0.25 -0.4
1,350,809 + BWI76_RS06425 0.33 +0.1
1,350,817 - BWI76_RS06425 0.34 -0.7
1,350,995 - BWI76_RS06425 0.47 +0.2
1,351,164 - BWI76_RS06425 0.59 -0.5
1,351,189 + BWI76_RS06425 0.60 -0.1
1,351,290 + BWI76_RS06425 0.68 -0.1
1,351,549 - BWI76_RS06425 0.86 +0.2
1,351,605 - -0.2
1,351,769 + +0.1
1,351,770 + BWI76_RS06430 0.16 -0.1
1,351,778 - BWI76_RS06430 0.21 -0.7
1,351,788 - BWI76_RS06430 0.26 +1.0
1,351,802 + BWI76_RS06430 0.34 -0.9
1,351,802 + BWI76_RS06430 0.34 +0.4
1,351,810 - BWI76_RS06430 0.38 +0.1
1,351,810 - BWI76_RS06430 0.38 -0.1
1,351,810 - BWI76_RS06430 0.38 -0.3
1,351,942 - -0.1
1,351,944 - +0.2
1,351,959 + +0.5
1,352,168 - -0.1
1,352,391 + BWI76_RS06435 0.18 -0.5
1,352,435 + BWI76_RS06435 0.21 -0.1
1,352,564 - BWI76_RS06435 0.30 -0.0

Or see this region's nucleotide sequence