Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18485

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_18480 and AO353_18485 are separated by 120 nucleotidesAO353_18485 and AO353_18490 are separated by 37 nucleotides AO353_18480: AO353_18480 - potassium transporter TrkH, at 4,069,429 to 4,070,883 _18480 AO353_18485: AO353_18485 - nitroreductase, at 4,071,004 to 4,071,570 _18485 AO353_18490: AO353_18490 - histidine kinase, at 4,071,608 to 4,072,954 _18490 Position (kb) 4071 4072Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4070.013 kb on - strand, within AO353_18480at 4070.026 kb on + strand, within AO353_18480at 4070.104 kb on + strand, within AO353_18480at 4070.117 kb on + strand, within AO353_18480at 4070.117 kb on + strand, within AO353_18480at 4070.117 kb on + strand, within AO353_18480at 4070.117 kb on + strand, within AO353_18480at 4070.117 kb on + strand, within AO353_18480at 4070.117 kb on + strand, within AO353_18480at 4070.118 kb on - strand, within AO353_18480at 4070.118 kb on - strand, within AO353_18480at 4070.124 kb on + strand, within AO353_18480at 4070.124 kb on + strand, within AO353_18480at 4070.124 kb on + strand, within AO353_18480at 4070.124 kb on + strand, within AO353_18480at 4070.124 kb on + strand, within AO353_18480at 4070.124 kb on + strand, within AO353_18480at 4070.125 kb on - strand, within AO353_18480at 4070.125 kb on - strand, within AO353_18480at 4070.125 kb on - strand, within AO353_18480at 4070.125 kb on - strand, within AO353_18480at 4070.125 kb on - strand, within AO353_18480at 4070.125 kb on - strand, within AO353_18480at 4070.231 kb on - strand, within AO353_18480at 4070.419 kb on + strand, within AO353_18480at 4070.419 kb on + strand, within AO353_18480at 4070.420 kb on - strand, within AO353_18480at 4070.535 kb on + strand, within AO353_18480at 4070.535 kb on + strand, within AO353_18480at 4070.535 kb on + strand, within AO353_18480at 4070.535 kb on + strand, within AO353_18480at 4070.535 kb on + strand, within AO353_18480at 4070.535 kb on + strand, within AO353_18480at 4070.535 kb on + strand, within AO353_18480at 4070.536 kb on - strand, within AO353_18480at 4070.536 kb on - strand, within AO353_18480at 4070.536 kb on - strand, within AO353_18480at 4070.536 kb on - strand, within AO353_18480at 4070.536 kb on - strand, within AO353_18480at 4070.585 kb on + strand, within AO353_18480at 4070.585 kb on + strand, within AO353_18480at 4070.585 kb on + strand, within AO353_18480at 4070.585 kb on + strand, within AO353_18480at 4070.586 kb on - strand, within AO353_18480at 4070.586 kb on - strand, within AO353_18480at 4070.586 kb on - strand, within AO353_18480at 4070.626 kb on + strand, within AO353_18480at 4070.626 kb on + strand, within AO353_18480at 4070.663 kb on + strand, within AO353_18480at 4070.663 kb on + strand, within AO353_18480at 4070.663 kb on + strand, within AO353_18480at 4070.663 kb on + strand, within AO353_18480at 4070.663 kb on + strand, within AO353_18480at 4070.663 kb on + strand, within AO353_18480at 4070.663 kb on + strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.664 kb on - strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.686 kb on + strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strandat 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.687 kb on - strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.688 kb on + strand, within AO353_18480at 4070.689 kb on - strand, within AO353_18480at 4070.689 kb on - strand, within AO353_18480at 4070.689 kb on - strand, within AO353_18480at 4070.736 kb on + strand, within AO353_18480at 4070.737 kb on - strand, within AO353_18480at 4070.737 kb on - strand, within AO353_18480at 4070.920 kb on + strandat 4070.920 kb on + strandat 4070.921 kb on - strandat 4070.921 kb on - strandat 4070.940 kb on + strandat 4070.940 kb on + strandat 4070.941 kb on - strandat 4070.941 kb on - strandat 4070.941 kb on - strandat 4070.941 kb on - strandat 4070.941 kb on - strandat 4070.941 kb on - strandat 4070.941 kb on - strandat 4070.941 kb on - strandat 4070.941 kb on - strandat 4070.969 kb on + strandat 4070.969 kb on + strandat 4071.147 kb on + strand, within AO353_18485at 4071.185 kb on + strand, within AO353_18485at 4071.186 kb on - strand, within AO353_18485at 4071.186 kb on - strand, within AO353_18485at 4071.360 kb on + strand, within AO353_18485at 4071.361 kb on - strand, within AO353_18485at 4071.361 kb on - strand, within AO353_18485at 4071.376 kb on + strand, within AO353_18485at 4071.377 kb on - strand, within AO353_18485at 4071.377 kb on - strand, within AO353_18485at 4071.377 kb on - strand, within AO353_18485at 4071.377 kb on - strand, within AO353_18485at 4071.485 kb on - strand, within AO353_18485at 4071.485 kb on - strand, within AO353_18485at 4071.630 kb on - strandat 4071.630 kb on - strandat 4071.806 kb on + strand, within AO353_18490at 4071.806 kb on + strand, within AO353_18490at 4071.806 kb on + strand, within AO353_18490at 4071.962 kb on + strand, within AO353_18490at 4071.962 kb on + strand, within AO353_18490at 4071.962 kb on + strand, within AO353_18490at 4071.962 kb on + strand, within AO353_18490at 4071.962 kb on + strand, within AO353_18490at 4071.962 kb on + strand, within AO353_18490at 4071.963 kb on - strand, within AO353_18490at 4071.963 kb on - strand, within AO353_18490at 4071.963 kb on - strand, within AO353_18490at 4071.963 kb on - strand, within AO353_18490at 4071.963 kb on - strand, within AO353_18490at 4071.963 kb on - strand, within AO353_18490at 4072.030 kb on + strand, within AO353_18490at 4072.030 kb on + strand, within AO353_18490at 4072.030 kb on + strand, within AO353_18490at 4072.030 kb on + strand, within AO353_18490at 4072.031 kb on - strand, within AO353_18490at 4072.031 kb on - strand, within AO353_18490at 4072.031 kb on - strand, within AO353_18490at 4072.031 kb on - strand, within AO353_18490at 4072.031 kb on - strand, within AO353_18490at 4072.031 kb on - strand, within AO353_18490at 4072.371 kb on + strand, within AO353_18490at 4072.371 kb on + strand, within AO353_18490at 4072.371 kb on + strand, within AO353_18490at 4072.372 kb on - strand, within AO353_18490at 4072.372 kb on - strand, within AO353_18490at 4072.372 kb on - strand, within AO353_18490at 4072.372 kb on - strand, within AO353_18490at 4072.372 kb on - strand, within AO353_18490at 4072.372 kb on - strand, within AO353_18490at 4072.543 kb on + strand, within AO353_18490at 4072.543 kb on + strand, within AO353_18490at 4072.544 kb on - strand, within AO353_18490at 4072.544 kb on - strand, within AO353_18490at 4072.544 kb on - strand, within AO353_18490at 4072.544 kb on - strand, within AO353_18490at 4072.544 kb on - strand, within AO353_18490at 4072.548 kb on + strand, within AO353_18490at 4072.548 kb on + strand, within AO353_18490at 4072.549 kb on - strand, within AO353_18490at 4072.560 kb on + strand, within AO353_18490at 4072.561 kb on - strand, within AO353_18490at 4072.561 kb on - strand, within AO353_18490at 4072.561 kb on - strand, within AO353_18490at 4072.561 kb on - strand, within AO353_18490at 4072.561 kb on - strand, within AO353_18490at 4072.561 kb on - strand, within AO353_18490

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
4,070,013 - AO353_18480 0.40 -0.6
4,070,026 + AO353_18480 0.41 +0.4
4,070,104 + AO353_18480 0.46 -0.1
4,070,117 + AO353_18480 0.47 -2.1
4,070,117 + AO353_18480 0.47 -0.0
4,070,117 + AO353_18480 0.47 +0.8
4,070,117 + AO353_18480 0.47 +1.6
4,070,117 + AO353_18480 0.47 -2.7
4,070,117 + AO353_18480 0.47 -0.3
4,070,118 - AO353_18480 0.47 -1.5
4,070,118 - AO353_18480 0.47 -1.3
4,070,124 + AO353_18480 0.48 +0.7
4,070,124 + AO353_18480 0.48 -0.4
4,070,124 + AO353_18480 0.48 -0.1
4,070,124 + AO353_18480 0.48 -0.5
4,070,124 + AO353_18480 0.48 +0.8
4,070,124 + AO353_18480 0.48 -1.8
4,070,125 - AO353_18480 0.48 +0.9
4,070,125 - AO353_18480 0.48 -1.1
4,070,125 - AO353_18480 0.48 -0.7
4,070,125 - AO353_18480 0.48 -1.4
4,070,125 - AO353_18480 0.48 -0.2
4,070,125 - AO353_18480 0.48 +0.9
4,070,231 - AO353_18480 0.55 +1.1
4,070,419 + AO353_18480 0.68 +0.4
4,070,419 + AO353_18480 0.68 -1.2
4,070,420 - AO353_18480 0.68 +2.2
4,070,535 + AO353_18480 0.76 -0.4
4,070,535 + AO353_18480 0.76 -0.1
4,070,535 + AO353_18480 0.76 -1.1
4,070,535 + AO353_18480 0.76 +0.9
4,070,535 + AO353_18480 0.76 -0.4
4,070,535 + AO353_18480 0.76 +0.5
4,070,535 + AO353_18480 0.76 +0.6
4,070,536 - AO353_18480 0.76 -0.4
4,070,536 - AO353_18480 0.76 -0.9
4,070,536 - AO353_18480 0.76 +0.7
4,070,536 - AO353_18480 0.76 -1.7
4,070,536 - AO353_18480 0.76 +0.1
4,070,585 + AO353_18480 0.79 -2.0
4,070,585 + AO353_18480 0.79 +0.8
4,070,585 + AO353_18480 0.79 -0.9
4,070,585 + AO353_18480 0.79 +0.1
4,070,586 - AO353_18480 0.80 -0.8
4,070,586 - AO353_18480 0.80 -1.7
4,070,586 - AO353_18480 0.80 -0.6
4,070,626 + AO353_18480 0.82 -0.9
4,070,626 + AO353_18480 0.82 +0.0
4,070,663 + AO353_18480 0.85 -0.3
4,070,663 + AO353_18480 0.85 -0.2
4,070,663 + AO353_18480 0.85 -0.7
4,070,663 + AO353_18480 0.85 -1.1
4,070,663 + AO353_18480 0.85 -2.0
4,070,663 + AO353_18480 0.85 -0.7
4,070,663 + AO353_18480 0.85 -1.4
4,070,664 - AO353_18480 0.85 +0.7
4,070,664 - AO353_18480 0.85 -0.1
4,070,664 - AO353_18480 0.85 -1.0
4,070,664 - AO353_18480 0.85 -0.3
4,070,664 - AO353_18480 0.85 +0.6
4,070,664 - AO353_18480 0.85 -2.2
4,070,664 - AO353_18480 0.85 +0.2
4,070,664 - AO353_18480 0.85 +0.4
4,070,664 - AO353_18480 0.85 +0.1
4,070,664 - AO353_18480 0.85 -0.3
4,070,664 - AO353_18480 0.85 +0.0
4,070,664 - AO353_18480 0.85 +1.9
4,070,664 - AO353_18480 0.85 -0.9
4,070,664 - AO353_18480 0.85 -1.6
4,070,664 - AO353_18480 0.85 +0.6
4,070,664 - AO353_18480 0.85 -1.2
4,070,664 - AO353_18480 0.85 -0.4
4,070,664 - AO353_18480 0.85 +0.7
4,070,664 - AO353_18480 0.85 -0.7
4,070,686 + AO353_18480 0.86 -1.3
4,070,686 + AO353_18480 0.86 -0.5
4,070,686 + AO353_18480 0.86 -0.3
4,070,686 + AO353_18480 0.86 -0.4
4,070,686 + AO353_18480 0.86 -1.8
4,070,686 + AO353_18480 0.86 +0.4
4,070,686 + AO353_18480 0.86 +0.3
4,070,686 + AO353_18480 0.86 -1.7
4,070,686 + AO353_18480 0.86 +0.6
4,070,686 + AO353_18480 0.86 +0.3
4,070,686 + AO353_18480 0.86 -0.2
4,070,686 + AO353_18480 0.86 -0.8
4,070,686 + AO353_18480 0.86 -1.8
4,070,686 + AO353_18480 0.86 -1.3
4,070,686 + AO353_18480 0.86 -2.3
4,070,686 + AO353_18480 0.86 +1.3
4,070,686 + AO353_18480 0.86 +0.9
4,070,686 + AO353_18480 0.86 -0.9
4,070,686 + AO353_18480 0.86 -0.0
4,070,686 + AO353_18480 0.86 +0.5
4,070,686 + AO353_18480 0.86 -0.9
4,070,687 - AO353_18480 0.86 -0.8
4,070,687 - AO353_18480 0.86 -1.1
4,070,687 - AO353_18480 0.86 +1.9
4,070,687 - AO353_18480 0.86 -1.5
4,070,687 - AO353_18480 0.86 -0.2
4,070,687 - AO353_18480 0.86 -1.1
4,070,687 - AO353_18480 0.86 -0.0
4,070,687 - AO353_18480 0.86 +0.3
4,070,687 - AO353_18480 0.86 -1.0
4,070,687 - AO353_18480 0.86 -0.0
4,070,687 - AO353_18480 0.86 -0.7
4,070,687 - AO353_18480 0.86 -1.3
4,070,687 - AO353_18480 0.86 -2.0
4,070,687 - -1.1
4,070,687 - AO353_18480 0.86 +0.6
4,070,687 - AO353_18480 0.86 -2.2
4,070,687 - AO353_18480 0.86 -1.0
4,070,687 - AO353_18480 0.86 -0.1
4,070,687 - AO353_18480 0.86 +0.7
4,070,687 - AO353_18480 0.86 -0.3
4,070,687 - AO353_18480 0.86 -2.2
4,070,687 - AO353_18480 0.86 +0.3
4,070,687 - AO353_18480 0.86 -0.8
4,070,687 - AO353_18480 0.86 -0.1
4,070,687 - AO353_18480 0.86 -0.3
4,070,687 - AO353_18480 0.86 -2.0
4,070,687 - AO353_18480 0.86 -0.3
4,070,687 - AO353_18480 0.86 -0.5
4,070,688 + AO353_18480 0.87 -0.7
4,070,688 + AO353_18480 0.87 -2.7
4,070,688 + AO353_18480 0.87 +0.3
4,070,688 + AO353_18480 0.87 -1.3
4,070,688 + AO353_18480 0.87 +0.3
4,070,688 + AO353_18480 0.87 -1.7
4,070,688 + AO353_18480 0.87 -0.1
4,070,688 + AO353_18480 0.87 -1.3
4,070,688 + AO353_18480 0.87 -0.3
4,070,688 + AO353_18480 0.87 -0.1
4,070,688 + AO353_18480 0.87 +1.0
4,070,689 - AO353_18480 0.87 +0.4
4,070,689 - AO353_18480 0.87 -2.0
4,070,689 - AO353_18480 0.87 -2.5
4,070,736 + AO353_18480 0.90 -1.1
4,070,737 - AO353_18480 0.90 -0.6
4,070,737 - AO353_18480 0.90 -1.6
4,070,920 + +0.5
4,070,920 + +1.0
4,070,921 - -0.0
4,070,921 - -0.4
4,070,940 + +0.6
4,070,940 + +0.5
4,070,941 - -0.9
4,070,941 - -0.9
4,070,941 - -0.7
4,070,941 - +0.2
4,070,941 - +0.3
4,070,941 - -0.1
4,070,941 - -1.8
4,070,941 - -1.2
4,070,941 - -1.5
4,070,969 + -0.7
4,070,969 + -0.9
4,071,147 + AO353_18485 0.25 -0.1
4,071,185 + AO353_18485 0.32 -1.0
4,071,186 - AO353_18485 0.32 -1.9
4,071,186 - AO353_18485 0.32 +0.2
4,071,360 + AO353_18485 0.63 -2.7
4,071,361 - AO353_18485 0.63 -1.1
4,071,361 - AO353_18485 0.63 +1.1
4,071,376 + AO353_18485 0.66 +0.3
4,071,377 - AO353_18485 0.66 +1.6
4,071,377 - AO353_18485 0.66 -0.6
4,071,377 - AO353_18485 0.66 -1.3
4,071,377 - AO353_18485 0.66 -2.0
4,071,485 - AO353_18485 0.85 -1.1
4,071,485 - AO353_18485 0.85 -0.5
4,071,630 - -1.1
4,071,630 - +0.9
4,071,806 + AO353_18490 0.15 -0.5
4,071,806 + AO353_18490 0.15 +0.1
4,071,806 + AO353_18490 0.15 -0.5
4,071,962 + AO353_18490 0.26 +0.2
4,071,962 + AO353_18490 0.26 +0.3
4,071,962 + AO353_18490 0.26 +1.3
4,071,962 + AO353_18490 0.26 +0.2
4,071,962 + AO353_18490 0.26 -2.4
4,071,962 + AO353_18490 0.26 +0.8
4,071,963 - AO353_18490 0.26 +0.4
4,071,963 - AO353_18490 0.26 -0.7
4,071,963 - AO353_18490 0.26 -1.1
4,071,963 - AO353_18490 0.26 +1.2
4,071,963 - AO353_18490 0.26 -1.3
4,071,963 - AO353_18490 0.26 -2.8
4,072,030 + AO353_18490 0.31 -0.8
4,072,030 + AO353_18490 0.31 -1.5
4,072,030 + AO353_18490 0.31 -1.3
4,072,030 + AO353_18490 0.31 -0.2
4,072,031 - AO353_18490 0.31 -2.2
4,072,031 - AO353_18490 0.31 +0.3
4,072,031 - AO353_18490 0.31 -0.7
4,072,031 - AO353_18490 0.31 -0.9
4,072,031 - AO353_18490 0.31 -1.7
4,072,031 - AO353_18490 0.31 +1.0
4,072,371 + AO353_18490 0.57 +0.1
4,072,371 + AO353_18490 0.57 -0.4
4,072,371 + AO353_18490 0.57 +0.4
4,072,372 - AO353_18490 0.57 -0.0
4,072,372 - AO353_18490 0.57 +0.1
4,072,372 - AO353_18490 0.57 -0.3
4,072,372 - AO353_18490 0.57 -0.4
4,072,372 - AO353_18490 0.57 -0.4
4,072,372 - AO353_18490 0.57 -0.8
4,072,543 + AO353_18490 0.69 +0.4
4,072,543 + AO353_18490 0.69 +0.8
4,072,544 - AO353_18490 0.69 -1.1
4,072,544 - AO353_18490 0.69 +2.1
4,072,544 - AO353_18490 0.69 +0.1
4,072,544 - AO353_18490 0.69 +2.0
4,072,544 - AO353_18490 0.69 +0.1
4,072,548 + AO353_18490 0.70 +0.1
4,072,548 + AO353_18490 0.70 -0.0
4,072,549 - AO353_18490 0.70 +1.2
4,072,560 + AO353_18490 0.71 -1.2
4,072,561 - AO353_18490 0.71 +0.0
4,072,561 - AO353_18490 0.71 -0.5
4,072,561 - AO353_18490 0.71 -0.7
4,072,561 - AO353_18490 0.71 +0.5
4,072,561 - AO353_18490 0.71 -0.5
4,072,561 - AO353_18490 0.71 +0.2

Or see this region's nucleotide sequence