Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18480 and AO353_18485 are separated by 120 nucleotides AO353_18485 and AO353_18490 are separated by 37 nucleotides
AO353_18480: AO353_18480 - potassium transporter TrkH, at 4,069,429 to 4,070,883
_18480
AO353_18485: AO353_18485 - nitroreductase, at 4,071,004 to 4,071,570
_18485
AO353_18490: AO353_18490 - histidine kinase, at 4,071,608 to 4,072,954
_18490
Position (kb)
4071
4072 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4070.013 kb on - strand, within AO353_18480 at 4070.026 kb on + strand, within AO353_18480 at 4070.104 kb on + strand, within AO353_18480 at 4070.117 kb on + strand, within AO353_18480 at 4070.117 kb on + strand, within AO353_18480 at 4070.117 kb on + strand, within AO353_18480 at 4070.117 kb on + strand, within AO353_18480 at 4070.117 kb on + strand, within AO353_18480 at 4070.117 kb on + strand, within AO353_18480 at 4070.118 kb on - strand, within AO353_18480 at 4070.118 kb on - strand, within AO353_18480 at 4070.124 kb on + strand, within AO353_18480 at 4070.124 kb on + strand, within AO353_18480 at 4070.124 kb on + strand, within AO353_18480 at 4070.124 kb on + strand, within AO353_18480 at 4070.124 kb on + strand, within AO353_18480 at 4070.124 kb on + strand, within AO353_18480 at 4070.125 kb on - strand, within AO353_18480 at 4070.125 kb on - strand, within AO353_18480 at 4070.125 kb on - strand, within AO353_18480 at 4070.125 kb on - strand, within AO353_18480 at 4070.125 kb on - strand, within AO353_18480 at 4070.125 kb on - strand, within AO353_18480 at 4070.231 kb on - strand, within AO353_18480 at 4070.419 kb on + strand, within AO353_18480 at 4070.419 kb on + strand, within AO353_18480 at 4070.420 kb on - strand, within AO353_18480 at 4070.535 kb on + strand, within AO353_18480 at 4070.535 kb on + strand, within AO353_18480 at 4070.535 kb on + strand, within AO353_18480 at 4070.535 kb on + strand, within AO353_18480 at 4070.535 kb on + strand, within AO353_18480 at 4070.535 kb on + strand, within AO353_18480 at 4070.535 kb on + strand, within AO353_18480 at 4070.536 kb on - strand, within AO353_18480 at 4070.536 kb on - strand, within AO353_18480 at 4070.536 kb on - strand, within AO353_18480 at 4070.536 kb on - strand, within AO353_18480 at 4070.536 kb on - strand, within AO353_18480 at 4070.585 kb on + strand, within AO353_18480 at 4070.585 kb on + strand, within AO353_18480 at 4070.585 kb on + strand, within AO353_18480 at 4070.585 kb on + strand, within AO353_18480 at 4070.586 kb on - strand, within AO353_18480 at 4070.586 kb on - strand, within AO353_18480 at 4070.586 kb on - strand, within AO353_18480 at 4070.626 kb on + strand, within AO353_18480 at 4070.626 kb on + strand, within AO353_18480 at 4070.663 kb on + strand, within AO353_18480 at 4070.663 kb on + strand, within AO353_18480 at 4070.663 kb on + strand, within AO353_18480 at 4070.663 kb on + strand, within AO353_18480 at 4070.663 kb on + strand, within AO353_18480 at 4070.663 kb on + strand, within AO353_18480 at 4070.663 kb on + strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.664 kb on - strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.686 kb on + strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.687 kb on - strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.688 kb on + strand, within AO353_18480 at 4070.689 kb on - strand, within AO353_18480 at 4070.689 kb on - strand, within AO353_18480 at 4070.689 kb on - strand, within AO353_18480 at 4070.736 kb on + strand, within AO353_18480 at 4070.737 kb on - strand, within AO353_18480 at 4070.737 kb on - strand, within AO353_18480 at 4070.920 kb on + strand at 4070.920 kb on + strand at 4070.921 kb on - strand at 4070.921 kb on - strand at 4070.940 kb on + strand at 4070.940 kb on + strand at 4070.941 kb on - strand at 4070.941 kb on - strand at 4070.941 kb on - strand at 4070.941 kb on - strand at 4070.941 kb on - strand at 4070.941 kb on - strand at 4070.941 kb on - strand at 4070.941 kb on - strand at 4070.941 kb on - strand at 4070.969 kb on + strand at 4070.969 kb on + strand at 4071.147 kb on + strand, within AO353_18485 at 4071.185 kb on + strand, within AO353_18485 at 4071.186 kb on - strand, within AO353_18485 at 4071.186 kb on - strand, within AO353_18485 at 4071.360 kb on + strand, within AO353_18485 at 4071.361 kb on - strand, within AO353_18485 at 4071.361 kb on - strand, within AO353_18485 at 4071.376 kb on + strand, within AO353_18485 at 4071.377 kb on - strand, within AO353_18485 at 4071.377 kb on - strand, within AO353_18485 at 4071.377 kb on - strand, within AO353_18485 at 4071.377 kb on - strand, within AO353_18485 at 4071.485 kb on - strand, within AO353_18485 at 4071.485 kb on - strand, within AO353_18485 at 4071.630 kb on - strand at 4071.630 kb on - strand at 4071.806 kb on + strand, within AO353_18490 at 4071.806 kb on + strand, within AO353_18490 at 4071.806 kb on + strand, within AO353_18490 at 4071.962 kb on + strand, within AO353_18490 at 4071.962 kb on + strand, within AO353_18490 at 4071.962 kb on + strand, within AO353_18490 at 4071.962 kb on + strand, within AO353_18490 at 4071.962 kb on + strand, within AO353_18490 at 4071.962 kb on + strand, within AO353_18490 at 4071.963 kb on - strand, within AO353_18490 at 4071.963 kb on - strand, within AO353_18490 at 4071.963 kb on - strand, within AO353_18490 at 4071.963 kb on - strand, within AO353_18490 at 4071.963 kb on - strand, within AO353_18490 at 4071.963 kb on - strand, within AO353_18490 at 4072.030 kb on + strand, within AO353_18490 at 4072.030 kb on + strand, within AO353_18490 at 4072.030 kb on + strand, within AO353_18490 at 4072.030 kb on + strand, within AO353_18490 at 4072.031 kb on - strand, within AO353_18490 at 4072.031 kb on - strand, within AO353_18490 at 4072.031 kb on - strand, within AO353_18490 at 4072.031 kb on - strand, within AO353_18490 at 4072.031 kb on - strand, within AO353_18490 at 4072.031 kb on - strand, within AO353_18490 at 4072.371 kb on + strand, within AO353_18490 at 4072.371 kb on + strand, within AO353_18490 at 4072.371 kb on + strand, within AO353_18490 at 4072.372 kb on - strand, within AO353_18490 at 4072.372 kb on - strand, within AO353_18490 at 4072.372 kb on - strand, within AO353_18490 at 4072.372 kb on - strand, within AO353_18490 at 4072.372 kb on - strand, within AO353_18490 at 4072.372 kb on - strand, within AO353_18490 at 4072.543 kb on + strand, within AO353_18490 at 4072.543 kb on + strand, within AO353_18490 at 4072.544 kb on - strand, within AO353_18490 at 4072.544 kb on - strand, within AO353_18490 at 4072.544 kb on - strand, within AO353_18490 at 4072.544 kb on - strand, within AO353_18490 at 4072.544 kb on - strand, within AO353_18490 at 4072.548 kb on + strand, within AO353_18490 at 4072.548 kb on + strand, within AO353_18490 at 4072.549 kb on - strand, within AO353_18490 at 4072.560 kb on + strand, within AO353_18490 at 4072.561 kb on - strand, within AO353_18490 at 4072.561 kb on - strand, within AO353_18490 at 4072.561 kb on - strand, within AO353_18490 at 4072.561 kb on - strand, within AO353_18490 at 4072.561 kb on - strand, within AO353_18490 at 4072.561 kb on - strand, within AO353_18490
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 4,070,013 - AO353_18480 0.40 -0.6 4,070,026 + AO353_18480 0.41 +0.4 4,070,104 + AO353_18480 0.46 -0.1 4,070,117 + AO353_18480 0.47 -2.1 4,070,117 + AO353_18480 0.47 -0.0 4,070,117 + AO353_18480 0.47 +0.8 4,070,117 + AO353_18480 0.47 +1.6 4,070,117 + AO353_18480 0.47 -2.7 4,070,117 + AO353_18480 0.47 -0.3 4,070,118 - AO353_18480 0.47 -1.5 4,070,118 - AO353_18480 0.47 -1.3 4,070,124 + AO353_18480 0.48 +0.7 4,070,124 + AO353_18480 0.48 -0.4 4,070,124 + AO353_18480 0.48 -0.1 4,070,124 + AO353_18480 0.48 -0.5 4,070,124 + AO353_18480 0.48 +0.8 4,070,124 + AO353_18480 0.48 -1.8 4,070,125 - AO353_18480 0.48 +0.9 4,070,125 - AO353_18480 0.48 -1.1 4,070,125 - AO353_18480 0.48 -0.7 4,070,125 - AO353_18480 0.48 -1.4 4,070,125 - AO353_18480 0.48 -0.2 4,070,125 - AO353_18480 0.48 +0.9 4,070,231 - AO353_18480 0.55 +1.1 4,070,419 + AO353_18480 0.68 +0.4 4,070,419 + AO353_18480 0.68 -1.2 4,070,420 - AO353_18480 0.68 +2.2 4,070,535 + AO353_18480 0.76 -0.4 4,070,535 + AO353_18480 0.76 -0.1 4,070,535 + AO353_18480 0.76 -1.1 4,070,535 + AO353_18480 0.76 +0.9 4,070,535 + AO353_18480 0.76 -0.4 4,070,535 + AO353_18480 0.76 +0.5 4,070,535 + AO353_18480 0.76 +0.6 4,070,536 - AO353_18480 0.76 -0.4 4,070,536 - AO353_18480 0.76 -0.9 4,070,536 - AO353_18480 0.76 +0.7 4,070,536 - AO353_18480 0.76 -1.7 4,070,536 - AO353_18480 0.76 +0.1 4,070,585 + AO353_18480 0.79 -2.0 4,070,585 + AO353_18480 0.79 +0.8 4,070,585 + AO353_18480 0.79 -0.9 4,070,585 + AO353_18480 0.79 +0.1 4,070,586 - AO353_18480 0.80 -0.8 4,070,586 - AO353_18480 0.80 -1.7 4,070,586 - AO353_18480 0.80 -0.6 4,070,626 + AO353_18480 0.82 -0.9 4,070,626 + AO353_18480 0.82 +0.0 4,070,663 + AO353_18480 0.85 -0.3 4,070,663 + AO353_18480 0.85 -0.2 4,070,663 + AO353_18480 0.85 -0.7 4,070,663 + AO353_18480 0.85 -1.1 4,070,663 + AO353_18480 0.85 -2.0 4,070,663 + AO353_18480 0.85 -0.7 4,070,663 + AO353_18480 0.85 -1.4 4,070,664 - AO353_18480 0.85 +0.7 4,070,664 - AO353_18480 0.85 -0.1 4,070,664 - AO353_18480 0.85 -1.0 4,070,664 - AO353_18480 0.85 -0.3 4,070,664 - AO353_18480 0.85 +0.6 4,070,664 - AO353_18480 0.85 -2.2 4,070,664 - AO353_18480 0.85 +0.2 4,070,664 - AO353_18480 0.85 +0.4 4,070,664 - AO353_18480 0.85 +0.1 4,070,664 - AO353_18480 0.85 -0.3 4,070,664 - AO353_18480 0.85 +0.0 4,070,664 - AO353_18480 0.85 +1.9 4,070,664 - AO353_18480 0.85 -0.9 4,070,664 - AO353_18480 0.85 -1.6 4,070,664 - AO353_18480 0.85 +0.6 4,070,664 - AO353_18480 0.85 -1.2 4,070,664 - AO353_18480 0.85 -0.4 4,070,664 - AO353_18480 0.85 +0.7 4,070,664 - AO353_18480 0.85 -0.7 4,070,686 + AO353_18480 0.86 -1.3 4,070,686 + AO353_18480 0.86 -0.5 4,070,686 + AO353_18480 0.86 -0.3 4,070,686 + AO353_18480 0.86 -0.4 4,070,686 + AO353_18480 0.86 -1.8 4,070,686 + AO353_18480 0.86 +0.4 4,070,686 + AO353_18480 0.86 +0.3 4,070,686 + AO353_18480 0.86 -1.7 4,070,686 + AO353_18480 0.86 +0.6 4,070,686 + AO353_18480 0.86 +0.3 4,070,686 + AO353_18480 0.86 -0.2 4,070,686 + AO353_18480 0.86 -0.8 4,070,686 + AO353_18480 0.86 -1.8 4,070,686 + AO353_18480 0.86 -1.3 4,070,686 + AO353_18480 0.86 -2.3 4,070,686 + AO353_18480 0.86 +1.3 4,070,686 + AO353_18480 0.86 +0.9 4,070,686 + AO353_18480 0.86 -0.9 4,070,686 + AO353_18480 0.86 -0.0 4,070,686 + AO353_18480 0.86 +0.5 4,070,686 + AO353_18480 0.86 -0.9 4,070,687 - AO353_18480 0.86 -0.8 4,070,687 - AO353_18480 0.86 -1.1 4,070,687 - AO353_18480 0.86 +1.9 4,070,687 - AO353_18480 0.86 -1.5 4,070,687 - AO353_18480 0.86 -0.2 4,070,687 - AO353_18480 0.86 -1.1 4,070,687 - AO353_18480 0.86 -0.0 4,070,687 - AO353_18480 0.86 +0.3 4,070,687 - AO353_18480 0.86 -1.0 4,070,687 - AO353_18480 0.86 -0.0 4,070,687 - AO353_18480 0.86 -0.7 4,070,687 - AO353_18480 0.86 -1.3 4,070,687 - AO353_18480 0.86 -2.0 4,070,687 - -1.1 4,070,687 - AO353_18480 0.86 +0.6 4,070,687 - AO353_18480 0.86 -2.2 4,070,687 - AO353_18480 0.86 -1.0 4,070,687 - AO353_18480 0.86 -0.1 4,070,687 - AO353_18480 0.86 +0.7 4,070,687 - AO353_18480 0.86 -0.3 4,070,687 - AO353_18480 0.86 -2.2 4,070,687 - AO353_18480 0.86 +0.3 4,070,687 - AO353_18480 0.86 -0.8 4,070,687 - AO353_18480 0.86 -0.1 4,070,687 - AO353_18480 0.86 -0.3 4,070,687 - AO353_18480 0.86 -2.0 4,070,687 - AO353_18480 0.86 -0.3 4,070,687 - AO353_18480 0.86 -0.5 4,070,688 + AO353_18480 0.87 -0.7 4,070,688 + AO353_18480 0.87 -2.7 4,070,688 + AO353_18480 0.87 +0.3 4,070,688 + AO353_18480 0.87 -1.3 4,070,688 + AO353_18480 0.87 +0.3 4,070,688 + AO353_18480 0.87 -1.7 4,070,688 + AO353_18480 0.87 -0.1 4,070,688 + AO353_18480 0.87 -1.3 4,070,688 + AO353_18480 0.87 -0.3 4,070,688 + AO353_18480 0.87 -0.1 4,070,688 + AO353_18480 0.87 +1.0 4,070,689 - AO353_18480 0.87 +0.4 4,070,689 - AO353_18480 0.87 -2.0 4,070,689 - AO353_18480 0.87 -2.5 4,070,736 + AO353_18480 0.90 -1.1 4,070,737 - AO353_18480 0.90 -0.6 4,070,737 - AO353_18480 0.90 -1.6 4,070,920 + +0.5 4,070,920 + +1.0 4,070,921 - -0.0 4,070,921 - -0.4 4,070,940 + +0.6 4,070,940 + +0.5 4,070,941 - -0.9 4,070,941 - -0.9 4,070,941 - -0.7 4,070,941 - +0.2 4,070,941 - +0.3 4,070,941 - -0.1 4,070,941 - -1.8 4,070,941 - -1.2 4,070,941 - -1.5 4,070,969 + -0.7 4,070,969 + -0.9 4,071,147 + AO353_18485 0.25 -0.1 4,071,185 + AO353_18485 0.32 -1.0 4,071,186 - AO353_18485 0.32 -1.9 4,071,186 - AO353_18485 0.32 +0.2 4,071,360 + AO353_18485 0.63 -2.7 4,071,361 - AO353_18485 0.63 -1.1 4,071,361 - AO353_18485 0.63 +1.1 4,071,376 + AO353_18485 0.66 +0.3 4,071,377 - AO353_18485 0.66 +1.6 4,071,377 - AO353_18485 0.66 -0.6 4,071,377 - AO353_18485 0.66 -1.3 4,071,377 - AO353_18485 0.66 -2.0 4,071,485 - AO353_18485 0.85 -1.1 4,071,485 - AO353_18485 0.85 -0.5 4,071,630 - -1.1 4,071,630 - +0.9 4,071,806 + AO353_18490 0.15 -0.5 4,071,806 + AO353_18490 0.15 +0.1 4,071,806 + AO353_18490 0.15 -0.5 4,071,962 + AO353_18490 0.26 +0.2 4,071,962 + AO353_18490 0.26 +0.3 4,071,962 + AO353_18490 0.26 +1.3 4,071,962 + AO353_18490 0.26 +0.2 4,071,962 + AO353_18490 0.26 -2.4 4,071,962 + AO353_18490 0.26 +0.8 4,071,963 - AO353_18490 0.26 +0.4 4,071,963 - AO353_18490 0.26 -0.7 4,071,963 - AO353_18490 0.26 -1.1 4,071,963 - AO353_18490 0.26 +1.2 4,071,963 - AO353_18490 0.26 -1.3 4,071,963 - AO353_18490 0.26 -2.8 4,072,030 + AO353_18490 0.31 -0.8 4,072,030 + AO353_18490 0.31 -1.5 4,072,030 + AO353_18490 0.31 -1.3 4,072,030 + AO353_18490 0.31 -0.2 4,072,031 - AO353_18490 0.31 -2.2 4,072,031 - AO353_18490 0.31 +0.3 4,072,031 - AO353_18490 0.31 -0.7 4,072,031 - AO353_18490 0.31 -0.9 4,072,031 - AO353_18490 0.31 -1.7 4,072,031 - AO353_18490 0.31 +1.0 4,072,371 + AO353_18490 0.57 +0.1 4,072,371 + AO353_18490 0.57 -0.4 4,072,371 + AO353_18490 0.57 +0.4 4,072,372 - AO353_18490 0.57 -0.0 4,072,372 - AO353_18490 0.57 +0.1 4,072,372 - AO353_18490 0.57 -0.3 4,072,372 - AO353_18490 0.57 -0.4 4,072,372 - AO353_18490 0.57 -0.4 4,072,372 - AO353_18490 0.57 -0.8 4,072,543 + AO353_18490 0.69 +0.4 4,072,543 + AO353_18490 0.69 +0.8 4,072,544 - AO353_18490 0.69 -1.1 4,072,544 - AO353_18490 0.69 +2.1 4,072,544 - AO353_18490 0.69 +0.1 4,072,544 - AO353_18490 0.69 +2.0 4,072,544 - AO353_18490 0.69 +0.1 4,072,548 + AO353_18490 0.70 +0.1 4,072,548 + AO353_18490 0.70 -0.0 4,072,549 - AO353_18490 0.70 +1.2 4,072,560 + AO353_18490 0.71 -1.2 4,072,561 - AO353_18490 0.71 +0.0 4,072,561 - AO353_18490 0.71 -0.5 4,072,561 - AO353_18490 0.71 -0.7 4,072,561 - AO353_18490 0.71 +0.5 4,072,561 - AO353_18490 0.71 -0.5 4,072,561 - AO353_18490 0.71 +0.2
Or see this region's nucleotide sequence