Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14850

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14845 and AO353_14850 are separated by 159 nucleotidesAO353_14850 and AO353_14855 are separated by 2 nucleotidesAO353_14855 and AO353_14860 are separated by 165 nucleotides AO353_14845: AO353_14845 - ferrochelatase, at 3,285,773 to 3,286,795 _14845 AO353_14850: AO353_14850 - uracil transporter, at 3,286,955 to 3,288,229 _14850 AO353_14855: AO353_14855 - uracil phosphoribosyltransferase, at 3,288,232 to 3,288,870 _14855 AO353_14860: AO353_14860 - hypoxanthine-guanine phosphoribosyltransferase, at 3,289,036 to 3,289,593 _14860 Position (kb) 3286 3287 3288 3289Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3286.793 kb on + strandat 3286.793 kb on + strandat 3286.794 kb on - strandat 3286.866 kb on + strandat 3286.866 kb on + strandat 3286.866 kb on + strandat 3286.867 kb on - strandat 3286.867 kb on - strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.946 kb on + strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.947 kb on - strandat 3286.948 kb on + strandat 3286.948 kb on + strandat 3286.948 kb on + strandat 3286.948 kb on + strandat 3286.948 kb on + strandat 3286.948 kb on + strandat 3286.948 kb on + strandat 3286.948 kb on + strandat 3286.949 kb on - strandat 3286.949 kb on - strandat 3286.949 kb on - strandat 3287.334 kb on + strand, within AO353_14850at 3287.334 kb on + strand, within AO353_14850at 3287.334 kb on + strand, within AO353_14850at 3287.334 kb on + strand, within AO353_14850at 3287.334 kb on + strand, within AO353_14850at 3287.334 kb on + strand, within AO353_14850at 3287.334 kb on + strand, within AO353_14850at 3287.334 kb on + strand, within AO353_14850at 3287.334 kb on + strand, within AO353_14850at 3287.335 kb on - strand, within AO353_14850at 3287.335 kb on - strand, within AO353_14850at 3287.335 kb on - strand, within AO353_14850at 3287.335 kb on - strand, within AO353_14850at 3287.335 kb on - strand, within AO353_14850at 3287.335 kb on - strand, within AO353_14850at 3287.335 kb on - strand, within AO353_14850at 3287.335 kb on - strand, within AO353_14850at 3287.335 kb on - strand, within AO353_14850at 3287.373 kb on + strand, within AO353_14850at 3287.373 kb on + strand, within AO353_14850at 3287.373 kb on + strand, within AO353_14850at 3287.374 kb on - strand, within AO353_14850at 3287.374 kb on - strand, within AO353_14850at 3287.374 kb on - strand, within AO353_14850at 3287.374 kb on - strand, within AO353_14850at 3287.374 kb on - strand, within AO353_14850at 3287.374 kb on - strand, within AO353_14850at 3287.374 kb on - strand, within AO353_14850at 3287.383 kb on + strand, within AO353_14850at 3287.383 kb on + strand, within AO353_14850at 3287.383 kb on + strand, within AO353_14850at 3287.383 kb on + strand, within AO353_14850at 3287.384 kb on - strand, within AO353_14850at 3287.384 kb on - strand, within AO353_14850at 3287.384 kb on - strand, within AO353_14850at 3287.466 kb on + strand, within AO353_14850at 3287.467 kb on - strand, within AO353_14850at 3287.510 kb on - strand, within AO353_14850at 3287.669 kb on + strand, within AO353_14850at 3287.670 kb on - strand, within AO353_14850at 3287.720 kb on + strand, within AO353_14850at 3287.720 kb on + strand, within AO353_14850at 3287.720 kb on + strand, within AO353_14850at 3287.938 kb on + strand, within AO353_14850at 3287.938 kb on + strand, within AO353_14850at 3287.938 kb on + strand, within AO353_14850at 3287.938 kb on + strand, within AO353_14850at 3287.938 kb on + strand, within AO353_14850at 3287.938 kb on + strand, within AO353_14850at 3287.939 kb on - strand, within AO353_14850at 3287.939 kb on - strand, within AO353_14850at 3287.939 kb on - strand, within AO353_14850at 3287.939 kb on - strand, within AO353_14850at 3287.940 kb on + strand, within AO353_14850at 3287.940 kb on + strand, within AO353_14850at 3287.941 kb on - strand, within AO353_14850at 3287.941 kb on - strand, within AO353_14850at 3288.131 kb on - strandat 3288.296 kb on + strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.365 kb on - strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.534 kb on - strand, within AO353_14855at 3288.658 kb on - strand, within AO353_14855at 3288.658 kb on - strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.717 kb on - strand, within AO353_14855at 3288.717 kb on - strand, within AO353_14855at 3288.717 kb on - strand, within AO353_14855at 3288.717 kb on - strand, within AO353_14855at 3288.749 kb on + strand, within AO353_14855at 3288.749 kb on + strand, within AO353_14855at 3288.749 kb on + strand, within AO353_14855at 3288.750 kb on - strand, within AO353_14855at 3288.801 kb on + strand, within AO353_14855at 3288.820 kb on - strandat 3288.907 kb on + strandat 3288.907 kb on + strandat 3288.907 kb on + strandat 3288.907 kb on + strandat 3288.908 kb on - strandat 3288.908 kb on - strandat 3288.912 kb on + strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.917 kb on + strandat 3288.917 kb on + strandat 3288.918 kb on - strandat 3288.918 kb on - strandat 3288.936 kb on - strandat 3288.936 kb on - strandat 3288.936 kb on - strandat 3288.937 kb on + strandat 3288.937 kb on + strandat 3288.937 kb on + strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.990 kb on + strandat 3288.990 kb on + strandat 3288.990 kb on + strandat 3288.991 kb on - strandat 3288.991 kb on - strandat 3289.056 kb on + strandat 3289.090 kb on + strandat 3289.090 kb on + strandat 3289.158 kb on + strand, within AO353_14860

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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3,286,793 + +1.2
3,286,793 + +0.6
3,286,794 - +1.2
3,286,866 + +0.6
3,286,866 + -0.6
3,286,866 + -0.4
3,286,867 - +0.5
3,286,867 - +0.3
3,286,946 + -0.2
3,286,946 + -1.2
3,286,946 + +0.5
3,286,946 + +0.4
3,286,946 + +0.6
3,286,946 + -0.4
3,286,946 + -0.6
3,286,946 + -0.1
3,286,946 + -0.1
3,286,946 + +1.5
3,286,946 + +0.0
3,286,946 + -2.8
3,286,946 + +0.8
3,286,947 - +0.1
3,286,947 - -1.5
3,286,947 - +0.7
3,286,947 - +1.4
3,286,947 - +0.0
3,286,947 - +0.0
3,286,947 - +0.0
3,286,947 - -0.1
3,286,947 - +0.2
3,286,947 - -0.5
3,286,947 - +0.8
3,286,947 - +1.5
3,286,947 - -0.1
3,286,947 - -0.2
3,286,948 + +0.5
3,286,948 + +1.1
3,286,948 + +0.5
3,286,948 + -2.0
3,286,948 + -0.1
3,286,948 + -0.0
3,286,948 + +0.1
3,286,948 + +2.9
3,286,949 - +0.6
3,286,949 - -1.7
3,286,949 - +0.0
3,287,334 + AO353_14850 0.30 -0.6
3,287,334 + AO353_14850 0.30 -1.4
3,287,334 + AO353_14850 0.30 +0.6
3,287,334 + AO353_14850 0.30 -1.2
3,287,334 + AO353_14850 0.30 +0.9
3,287,334 + AO353_14850 0.30 +1.2
3,287,334 + AO353_14850 0.30 -0.2
3,287,334 + AO353_14850 0.30 -1.2
3,287,334 + AO353_14850 0.30 +0.8
3,287,335 - AO353_14850 0.30 -0.4
3,287,335 - AO353_14850 0.30 -0.1
3,287,335 - AO353_14850 0.30 -1.4
3,287,335 - AO353_14850 0.30 +0.1
3,287,335 - AO353_14850 0.30 -0.2
3,287,335 - AO353_14850 0.30 +0.5
3,287,335 - AO353_14850 0.30 +0.1
3,287,335 - AO353_14850 0.30 -1.9
3,287,335 - AO353_14850 0.30 +0.1
3,287,373 + AO353_14850 0.33 -0.2
3,287,373 + AO353_14850 0.33 +0.6
3,287,373 + AO353_14850 0.33 -0.4
3,287,374 - AO353_14850 0.33 -0.0
3,287,374 - AO353_14850 0.33 -0.6
3,287,374 - AO353_14850 0.33 -0.2
3,287,374 - AO353_14850 0.33 -0.0
3,287,374 - AO353_14850 0.33 -2.4
3,287,374 - AO353_14850 0.33 -0.4
3,287,374 - AO353_14850 0.33 +0.0
3,287,383 + AO353_14850 0.34 +0.5
3,287,383 + AO353_14850 0.34 -1.1
3,287,383 + AO353_14850 0.34 -1.7
3,287,383 + AO353_14850 0.34 -0.2
3,287,384 - AO353_14850 0.34 +1.0
3,287,384 - AO353_14850 0.34 -1.0
3,287,384 - AO353_14850 0.34 +0.8
3,287,466 + AO353_14850 0.40 +1.6
3,287,467 - AO353_14850 0.40 -1.0
3,287,510 - AO353_14850 0.44 -1.0
3,287,669 + AO353_14850 0.56 -1.7
3,287,670 - AO353_14850 0.56 +0.6
3,287,720 + AO353_14850 0.60 +0.9
3,287,720 + AO353_14850 0.60 -0.6
3,287,720 + AO353_14850 0.60 -0.3
3,287,938 + AO353_14850 0.77 +0.1
3,287,938 + AO353_14850 0.77 +0.3
3,287,938 + AO353_14850 0.77 -1.1
3,287,938 + AO353_14850 0.77 +0.8
3,287,938 + AO353_14850 0.77 +0.8
3,287,938 + AO353_14850 0.77 -0.2
3,287,939 - AO353_14850 0.77 +0.9
3,287,939 - AO353_14850 0.77 +0.5
3,287,939 - AO353_14850 0.77 -0.0
3,287,939 - AO353_14850 0.77 -1.6
3,287,940 + AO353_14850 0.77 +0.1
3,287,940 + AO353_14850 0.77 -0.6
3,287,941 - AO353_14850 0.77 +0.8
3,287,941 - AO353_14850 0.77 -1.0
3,288,131 - -0.4
3,288,296 + AO353_14855 0.10 +0.1
3,288,297 - AO353_14855 0.10 -1.8
3,288,297 - AO353_14855 0.10 +0.6
3,288,297 - AO353_14855 0.10 +0.4
3,288,297 - AO353_14855 0.10 +0.3
3,288,297 - AO353_14855 0.10 -0.1
3,288,297 - AO353_14855 0.10 -0.6
3,288,335 + AO353_14855 0.16 +0.4
3,288,335 + AO353_14855 0.16 -0.4
3,288,335 + AO353_14855 0.16 +1.0
3,288,335 + AO353_14855 0.16 +0.4
3,288,335 + AO353_14855 0.16 -0.3
3,288,335 + AO353_14855 0.16 +0.5
3,288,336 - AO353_14855 0.16 -0.0
3,288,336 - AO353_14855 0.16 -1.1
3,288,336 - AO353_14855 0.16 +0.3
3,288,336 - AO353_14855 0.16 -2.6
3,288,336 - AO353_14855 0.16 +1.1
3,288,336 - AO353_14855 0.16 -1.2
3,288,336 - AO353_14855 0.16 +0.9
3,288,336 - AO353_14855 0.16 +1.2
3,288,336 - AO353_14855 0.16 +1.1
3,288,336 - AO353_14855 0.16 -2.2
3,288,336 - AO353_14855 0.16 -1.2
3,288,365 - AO353_14855 0.21 +0.7
3,288,533 + AO353_14855 0.47 -0.8
3,288,533 + AO353_14855 0.47 +0.4
3,288,533 + AO353_14855 0.47 -0.1
3,288,533 + AO353_14855 0.47 -0.4
3,288,533 + AO353_14855 0.47 +0.2
3,288,533 + AO353_14855 0.47 -0.1
3,288,533 + AO353_14855 0.47 +0.7
3,288,533 + AO353_14855 0.47 -0.0
3,288,533 + AO353_14855 0.47 +1.1
3,288,533 + AO353_14855 0.47 +0.9
3,288,533 + AO353_14855 0.47 -0.7
3,288,533 + AO353_14855 0.47 +0.2
3,288,534 - AO353_14855 0.47 +1.1
3,288,658 - AO353_14855 0.67 +1.1
3,288,658 - AO353_14855 0.67 -1.6
3,288,716 + AO353_14855 0.76 -0.5
3,288,716 + AO353_14855 0.76 +0.2
3,288,716 + AO353_14855 0.76 +1.1
3,288,716 + AO353_14855 0.76 +0.9
3,288,716 + AO353_14855 0.76 -0.2
3,288,716 + AO353_14855 0.76 +1.1
3,288,716 + AO353_14855 0.76 -0.1
3,288,716 + AO353_14855 0.76 -0.1
3,288,716 + AO353_14855 0.76 +0.8
3,288,717 - AO353_14855 0.76 +0.4
3,288,717 - AO353_14855 0.76 -1.4
3,288,717 - AO353_14855 0.76 +1.6
3,288,717 - AO353_14855 0.76 -2.3
3,288,749 + AO353_14855 0.81 -2.9
3,288,749 + AO353_14855 0.81 -0.9
3,288,749 + AO353_14855 0.81 -2.2
3,288,750 - AO353_14855 0.81 -0.2
3,288,801 + AO353_14855 0.89 -0.9
3,288,820 - +0.3
3,288,907 + -1.9
3,288,907 + +0.9
3,288,907 + +0.5
3,288,907 + +1.1
3,288,908 - -0.2
3,288,908 - -0.4
3,288,912 + +0.1
3,288,913 - -1.3
3,288,913 - +0.2
3,288,913 - +2.1
3,288,913 - +1.1
3,288,913 - +0.3
3,288,913 - -1.9
3,288,917 + +3.0
3,288,917 + +0.5
3,288,918 - +1.3
3,288,918 - +0.8
3,288,936 - +0.6
3,288,936 - -0.1
3,288,936 - -1.6
3,288,937 + +0.5
3,288,937 + -1.0
3,288,937 + -0.2
3,288,938 - -1.9
3,288,938 - -0.7
3,288,938 - +1.0
3,288,938 - +0.6
3,288,938 - -0.5
3,288,938 - -0.7
3,288,938 - -0.1
3,288,938 - +0.0
3,288,943 + -0.5
3,288,943 + +0.6
3,288,943 + +0.5
3,288,943 + -1.0
3,288,943 + -1.5
3,288,943 + -0.8
3,288,943 + -1.0
3,288,943 + -0.4
3,288,943 + +0.7
3,288,943 + +0.6
3,288,943 + -1.0
3,288,943 + -0.0
3,288,943 + -0.3
3,288,943 + -1.0
3,288,943 + -0.2
3,288,943 + -0.7
3,288,943 + -1.2
3,288,943 + +1.9
3,288,943 + +0.7
3,288,943 + +1.8
3,288,943 + +0.2
3,288,943 + -0.5
3,288,943 + -0.2
3,288,943 + +0.6
3,288,944 - +0.0
3,288,944 - -0.0
3,288,944 - +1.6
3,288,944 - -0.8
3,288,944 - +0.6
3,288,944 - -0.2
3,288,944 - -0.4
3,288,944 - -0.6
3,288,944 - +0.1
3,288,944 - +0.9
3,288,944 - -1.8
3,288,944 - -2.2
3,288,944 - +0.7
3,288,944 - -1.2
3,288,944 - -0.5
3,288,944 - -0.3
3,288,944 - +0.9
3,288,944 - +0.1
3,288,944 - -0.2
3,288,948 + -0.1
3,288,948 + -0.3
3,288,948 + +0.8
3,288,948 + +0.1
3,288,948 + -0.0
3,288,948 + -0.5
3,288,948 + +2.7
3,288,948 + -0.8
3,288,948 + +0.9
3,288,949 - -0.2
3,288,949 - +0.3
3,288,949 - -1.0
3,288,949 - -0.8
3,288,949 - +0.4
3,288,949 - -0.0
3,288,949 - -0.1
3,288,949 - -0.4
3,288,949 - +0.4
3,288,990 + +0.6
3,288,990 + -0.2
3,288,990 + -0.9
3,288,991 - -1.6
3,288,991 - +0.5
3,289,056 + -0.9
3,289,090 + -0.2
3,289,090 + +0.5
3,289,158 + AO353_14860 0.22 -1.7

Or see this region's nucleotide sequence