Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07095 and AO353_07100 are separated by 7 nucleotides AO353_07100 and AO353_07105 overlap by 11 nucleotides AO353_07105 and AO353_07110 are separated by 140 nucleotides AO353_07110 and AO353_07115 are separated by 140 nucleotides
AO353_07095: AO353_07095 - hypothetical protein, at 1,559,813 to 1,560,259
_07095
AO353_07100: AO353_07100 - type III pantothenate kinase, at 1,560,267 to 1,561,016
_07100
AO353_07105: AO353_07105 - biotin--protein ligase, at 1,561,006 to 1,561,965
_07105
AO353_07110: AO353_07110 - 5S ribosomal RNA, at 1,562,106 to 1,562,221
_07110
AO353_07115: AO353_07115 - 23S ribosomal RNA, at 1,562,362 to 1,565,277
_07115
Position (kb)
1561
1562 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1560.051 kb on + strand, within AO353_07095 at 1560.051 kb on + strand, within AO353_07095 at 1560.052 kb on - strand, within AO353_07095 at 1560.082 kb on + strand, within AO353_07095 at 1560.082 kb on + strand, within AO353_07095 at 1560.082 kb on + strand, within AO353_07095 at 1560.083 kb on - strand, within AO353_07095 at 1560.083 kb on - strand, within AO353_07095 at 1560.083 kb on - strand, within AO353_07095 at 1560.083 kb on - strand, within AO353_07095 at 1560.101 kb on + strand, within AO353_07095 at 1560.101 kb on + strand, within AO353_07095 at 1560.101 kb on + strand, within AO353_07095 at 1560.101 kb on + strand, within AO353_07095 at 1560.101 kb on + strand, within AO353_07095 at 1560.101 kb on + strand, within AO353_07095 at 1560.101 kb on + strand, within AO353_07095 at 1560.101 kb on + strand, within AO353_07095 at 1560.102 kb on - strand, within AO353_07095 at 1560.102 kb on - strand, within AO353_07095 at 1560.102 kb on - strand, within AO353_07095 at 1560.102 kb on - strand, within AO353_07095 at 1560.151 kb on + strand, within AO353_07095 at 1560.151 kb on + strand, within AO353_07095 at 1560.151 kb on + strand, within AO353_07095 at 1560.152 kb on - strand, within AO353_07095 at 1560.152 kb on - strand, within AO353_07095 at 1560.153 kb on + strand, within AO353_07095 at 1560.153 kb on + strand, within AO353_07095 at 1560.153 kb on + strand, within AO353_07095 at 1560.153 kb on + strand, within AO353_07095 at 1560.153 kb on + strand, within AO353_07095 at 1560.153 kb on + strand, within AO353_07095 at 1560.153 kb on + strand, within AO353_07095 at 1560.153 kb on + strand, within AO353_07095 at 1560.154 kb on - strand, within AO353_07095 at 1560.154 kb on - strand, within AO353_07095 at 1560.154 kb on - strand, within AO353_07095 at 1560.154 kb on - strand, within AO353_07095 at 1560.154 kb on - strand, within AO353_07095 at 1560.154 kb on - strand, within AO353_07095 at 1560.154 kb on - strand, within AO353_07095 at 1560.154 kb on - strand, within AO353_07095 at 1560.213 kb on + strand, within AO353_07095 at 1560.213 kb on + strand, within AO353_07095 at 1560.213 kb on + strand, within AO353_07095 at 1560.214 kb on - strand, within AO353_07095 at 1560.216 kb on + strand at 1560.216 kb on + strand at 1560.217 kb on - strand at 1560.217 kb on - strand at 1560.217 kb on - strand at 1560.217 kb on - strand at 1560.259 kb on + strand at 1560.259 kb on + strand at 1560.259 kb on + strand at 1560.259 kb on + strand at 1560.260 kb on - strand at 1560.260 kb on - strand at 1560.260 kb on - strand at 1560.260 kb on - strand at 1560.304 kb on - strand at 1561.034 kb on - strand at 1561.034 kb on - strand at 1561.034 kb on - strand at 1561.834 kb on - strand, within AO353_07105 at 1561.891 kb on - strand at 1561.894 kb on - strand at 1561.894 kb on - strand at 1561.894 kb on - strand at 1561.894 kb on - strand at 1561.894 kb on - strand at 1561.894 kb on - strand at 1561.898 kb on - strand at 1561.898 kb on - strand at 1561.898 kb on - strand at 1561.898 kb on - strand at 1561.898 kb on - strand at 1561.898 kb on - strand at 1561.952 kb on - strand at 1561.952 kb on - strand at 1561.952 kb on - strand at 1561.952 kb on - strand at 1561.952 kb on - strand at 1561.972 kb on - strand at 1561.998 kb on + strand at 1561.999 kb on - strand at 1561.999 kb on - strand at 1562.021 kb on + strand at 1562.021 kb on + strand at 1562.021 kb on + strand at 1562.021 kb on + strand at 1562.022 kb on - strand at 1562.022 kb on - strand at 1562.022 kb on - strand at 1562.022 kb on - strand at 1562.022 kb on - strand at 1562.030 kb on + strand at 1562.030 kb on + strand at 1562.030 kb on + strand at 1562.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,560,051 + AO353_07095 0.53 +0.5 1,560,051 + AO353_07095 0.53 +2.2 1,560,052 - AO353_07095 0.53 +1.0 1,560,082 + AO353_07095 0.60 +0.8 1,560,082 + AO353_07095 0.60 +1.6 1,560,082 + AO353_07095 0.60 +2.7 1,560,083 - AO353_07095 0.60 -1.2 1,560,083 - AO353_07095 0.60 +0.4 1,560,083 - AO353_07095 0.60 -1.3 1,560,083 - AO353_07095 0.60 -1.9 1,560,101 + AO353_07095 0.64 +1.5 1,560,101 + AO353_07095 0.64 -0.1 1,560,101 + AO353_07095 0.64 -1.2 1,560,101 + AO353_07095 0.64 +1.1 1,560,101 + AO353_07095 0.64 -2.0 1,560,101 + AO353_07095 0.64 -1.5 1,560,101 + AO353_07095 0.64 -0.6 1,560,101 + AO353_07095 0.64 -0.6 1,560,102 - AO353_07095 0.65 -1.4 1,560,102 - AO353_07095 0.65 -1.9 1,560,102 - AO353_07095 0.65 -0.9 1,560,102 - AO353_07095 0.65 -0.1 1,560,151 + AO353_07095 0.76 -0.2 1,560,151 + AO353_07095 0.76 -1.8 1,560,151 + AO353_07095 0.76 -3.2 1,560,152 - AO353_07095 0.76 +0.7 1,560,152 - AO353_07095 0.76 -1.3 1,560,153 + AO353_07095 0.76 +0.8 1,560,153 + AO353_07095 0.76 -0.8 1,560,153 + AO353_07095 0.76 -1.4 1,560,153 + AO353_07095 0.76 -0.6 1,560,153 + AO353_07095 0.76 -1.7 1,560,153 + AO353_07095 0.76 -1.3 1,560,153 + AO353_07095 0.76 +0.6 1,560,153 + AO353_07095 0.76 -0.2 1,560,154 - AO353_07095 0.76 +0.2 1,560,154 - AO353_07095 0.76 -0.7 1,560,154 - AO353_07095 0.76 -0.0 1,560,154 - AO353_07095 0.76 -2.1 1,560,154 - AO353_07095 0.76 -1.1 1,560,154 - AO353_07095 0.76 -0.1 1,560,154 - AO353_07095 0.76 -0.4 1,560,154 - AO353_07095 0.76 -0.1 1,560,213 + AO353_07095 0.89 -0.9 1,560,213 + AO353_07095 0.89 +1.6 1,560,213 + AO353_07095 0.89 -0.4 1,560,214 - AO353_07095 0.90 -0.9 1,560,216 + +0.3 1,560,216 + -0.0 1,560,217 - -0.4 1,560,217 - -0.2 1,560,217 - -0.3 1,560,217 - -0.8 1,560,259 + +1.1 1,560,259 + -0.5 1,560,259 + +0.6 1,560,259 + +0.4 1,560,260 - -0.4 1,560,260 - +1.2 1,560,260 - -0.7 1,560,260 - -0.0 1,560,304 - +1.1 1,561,034 - +1.3 1,561,034 - -0.7 1,561,034 - -0.9 1,561,834 - AO353_07105 0.86 -1.5 1,561,891 - +1.2 1,561,894 - -1.9 1,561,894 - -0.6 1,561,894 - -0.1 1,561,894 - +1.5 1,561,894 - -0.2 1,561,894 - -0.9 1,561,898 - -0.3 1,561,898 - -0.5 1,561,898 - +0.4 1,561,898 - +0.2 1,561,898 - +0.4 1,561,898 - +0.9 1,561,952 - +1.7 1,561,952 - -0.6 1,561,952 - +1.0 1,561,952 - -2.3 1,561,952 - +0.5 1,561,972 - +0.1 1,561,998 + -0.4 1,561,999 - +0.5 1,561,999 - -0.2 1,562,021 + -1.7 1,562,021 + +0.3 1,562,021 + -2.3 1,562,021 + +1.0 1,562,022 - -0.9 1,562,022 - +2.1 1,562,022 - +0.8 1,562,022 - +0.2 1,562,022 - +1.0 1,562,030 + -1.8 1,562,030 + -1.1 1,562,030 + +0.2 1,562,031 - +0.4
Or see this region's nucleotide sequence