Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07105

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07095 and AO353_07100 are separated by 7 nucleotidesAO353_07100 and AO353_07105 overlap by 11 nucleotidesAO353_07105 and AO353_07110 are separated by 140 nucleotidesAO353_07110 and AO353_07115 are separated by 140 nucleotides AO353_07095: AO353_07095 - hypothetical protein, at 1,559,813 to 1,560,259 _07095 AO353_07100: AO353_07100 - type III pantothenate kinase, at 1,560,267 to 1,561,016 _07100 AO353_07105: AO353_07105 - biotin--protein ligase, at 1,561,006 to 1,561,965 _07105 AO353_07110: AO353_07110 - 5S ribosomal RNA, at 1,562,106 to 1,562,221 _07110 AO353_07115: AO353_07115 - 23S ribosomal RNA, at 1,562,362 to 1,565,277 _07115 Position (kb) 1561 1562Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1560.051 kb on + strand, within AO353_07095at 1560.051 kb on + strand, within AO353_07095at 1560.052 kb on - strand, within AO353_07095at 1560.082 kb on + strand, within AO353_07095at 1560.082 kb on + strand, within AO353_07095at 1560.082 kb on + strand, within AO353_07095at 1560.083 kb on - strand, within AO353_07095at 1560.083 kb on - strand, within AO353_07095at 1560.083 kb on - strand, within AO353_07095at 1560.083 kb on - strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.102 kb on - strand, within AO353_07095at 1560.102 kb on - strand, within AO353_07095at 1560.102 kb on - strand, within AO353_07095at 1560.102 kb on - strand, within AO353_07095at 1560.151 kb on + strand, within AO353_07095at 1560.151 kb on + strand, within AO353_07095at 1560.151 kb on + strand, within AO353_07095at 1560.152 kb on - strand, within AO353_07095at 1560.152 kb on - strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.213 kb on + strand, within AO353_07095at 1560.213 kb on + strand, within AO353_07095at 1560.213 kb on + strand, within AO353_07095at 1560.214 kb on - strand, within AO353_07095at 1560.216 kb on + strandat 1560.216 kb on + strandat 1560.217 kb on - strandat 1560.217 kb on - strandat 1560.217 kb on - strandat 1560.217 kb on - strandat 1560.259 kb on + strandat 1560.259 kb on + strandat 1560.259 kb on + strandat 1560.259 kb on + strandat 1560.260 kb on - strandat 1560.260 kb on - strandat 1560.260 kb on - strandat 1560.260 kb on - strandat 1560.304 kb on - strandat 1561.034 kb on - strandat 1561.034 kb on - strandat 1561.034 kb on - strandat 1561.834 kb on - strand, within AO353_07105at 1561.891 kb on - strandat 1561.894 kb on - strandat 1561.894 kb on - strandat 1561.894 kb on - strandat 1561.894 kb on - strandat 1561.894 kb on - strandat 1561.894 kb on - strandat 1561.898 kb on - strandat 1561.898 kb on - strandat 1561.898 kb on - strandat 1561.898 kb on - strandat 1561.898 kb on - strandat 1561.898 kb on - strandat 1561.952 kb on - strandat 1561.952 kb on - strandat 1561.952 kb on - strandat 1561.952 kb on - strandat 1561.952 kb on - strandat 1561.972 kb on - strandat 1561.998 kb on + strandat 1561.999 kb on - strandat 1561.999 kb on - strandat 1562.021 kb on + strandat 1562.021 kb on + strandat 1562.021 kb on + strandat 1562.021 kb on + strandat 1562.022 kb on - strandat 1562.022 kb on - strandat 1562.022 kb on - strandat 1562.022 kb on - strandat 1562.022 kb on - strandat 1562.030 kb on + strandat 1562.030 kb on + strandat 1562.030 kb on + strandat 1562.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,560,051 + AO353_07095 0.53 +0.5
1,560,051 + AO353_07095 0.53 +2.2
1,560,052 - AO353_07095 0.53 +1.0
1,560,082 + AO353_07095 0.60 +0.8
1,560,082 + AO353_07095 0.60 +1.6
1,560,082 + AO353_07095 0.60 +2.7
1,560,083 - AO353_07095 0.60 -1.2
1,560,083 - AO353_07095 0.60 +0.4
1,560,083 - AO353_07095 0.60 -1.3
1,560,083 - AO353_07095 0.60 -1.9
1,560,101 + AO353_07095 0.64 +1.5
1,560,101 + AO353_07095 0.64 -0.1
1,560,101 + AO353_07095 0.64 -1.2
1,560,101 + AO353_07095 0.64 +1.1
1,560,101 + AO353_07095 0.64 -2.0
1,560,101 + AO353_07095 0.64 -1.5
1,560,101 + AO353_07095 0.64 -0.6
1,560,101 + AO353_07095 0.64 -0.6
1,560,102 - AO353_07095 0.65 -1.4
1,560,102 - AO353_07095 0.65 -1.9
1,560,102 - AO353_07095 0.65 -0.9
1,560,102 - AO353_07095 0.65 -0.1
1,560,151 + AO353_07095 0.76 -0.2
1,560,151 + AO353_07095 0.76 -1.8
1,560,151 + AO353_07095 0.76 -3.2
1,560,152 - AO353_07095 0.76 +0.7
1,560,152 - AO353_07095 0.76 -1.3
1,560,153 + AO353_07095 0.76 +0.8
1,560,153 + AO353_07095 0.76 -0.8
1,560,153 + AO353_07095 0.76 -1.4
1,560,153 + AO353_07095 0.76 -0.6
1,560,153 + AO353_07095 0.76 -1.7
1,560,153 + AO353_07095 0.76 -1.3
1,560,153 + AO353_07095 0.76 +0.6
1,560,153 + AO353_07095 0.76 -0.2
1,560,154 - AO353_07095 0.76 +0.2
1,560,154 - AO353_07095 0.76 -0.7
1,560,154 - AO353_07095 0.76 -0.0
1,560,154 - AO353_07095 0.76 -2.1
1,560,154 - AO353_07095 0.76 -1.1
1,560,154 - AO353_07095 0.76 -0.1
1,560,154 - AO353_07095 0.76 -0.4
1,560,154 - AO353_07095 0.76 -0.1
1,560,213 + AO353_07095 0.89 -0.9
1,560,213 + AO353_07095 0.89 +1.6
1,560,213 + AO353_07095 0.89 -0.4
1,560,214 - AO353_07095 0.90 -0.9
1,560,216 + +0.3
1,560,216 + -0.0
1,560,217 - -0.4
1,560,217 - -0.2
1,560,217 - -0.3
1,560,217 - -0.8
1,560,259 + +1.1
1,560,259 + -0.5
1,560,259 + +0.6
1,560,259 + +0.4
1,560,260 - -0.4
1,560,260 - +1.2
1,560,260 - -0.7
1,560,260 - -0.0
1,560,304 - +1.1
1,561,034 - +1.3
1,561,034 - -0.7
1,561,034 - -0.9
1,561,834 - AO353_07105 0.86 -1.5
1,561,891 - +1.2
1,561,894 - -1.9
1,561,894 - -0.6
1,561,894 - -0.1
1,561,894 - +1.5
1,561,894 - -0.2
1,561,894 - -0.9
1,561,898 - -0.3
1,561,898 - -0.5
1,561,898 - +0.4
1,561,898 - +0.2
1,561,898 - +0.4
1,561,898 - +0.9
1,561,952 - +1.7
1,561,952 - -0.6
1,561,952 - +1.0
1,561,952 - -2.3
1,561,952 - +0.5
1,561,972 - +0.1
1,561,998 + -0.4
1,561,999 - +0.5
1,561,999 - -0.2
1,562,021 + -1.7
1,562,021 + +0.3
1,562,021 + -2.3
1,562,021 + +1.0
1,562,022 - -0.9
1,562,022 - +2.1
1,562,022 - +0.8
1,562,022 - +0.2
1,562,022 - +1.0
1,562,030 + -1.8
1,562,030 + -1.1
1,562,030 + +0.2
1,562,031 - +0.4

Or see this region's nucleotide sequence