Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04215 and AO353_04220 are separated by 42 nucleotides AO353_04220 and AO353_04225 overlap by 4 nucleotides
AO353_04215: AO353_04215 - diguanylate cyclase, at 904,944 to 905,945
_04215
AO353_04220: AO353_04220 - chemotaxis protein CheY, at 905,988 to 906,998
_04220
AO353_04225: AO353_04225 - chemotaxis protein CheA, at 906,995 to 909,289
_04225
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 904.988 kb on - strand at 904.988 kb on - strand at 904.988 kb on - strand at 904.988 kb on - strand at 905.024 kb on - strand at 905.095 kb on - strand, within AO353_04215 at 905.171 kb on + strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.320 kb on + strand, within AO353_04215 at 905.320 kb on + strand, within AO353_04215 at 905.321 kb on - strand, within AO353_04215 at 905.321 kb on - strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.414 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.599 kb on + strand, within AO353_04215 at 905.919 kb on - strand at 905.919 kb on - strand at 905.934 kb on + strand at 905.934 kb on + strand at 905.934 kb on + strand at 905.934 kb on + strand at 905.935 kb on - strand at 905.935 kb on - strand at 905.962 kb on - strand at 905.970 kb on + strand at 905.971 kb on - strand at 905.971 kb on - strand at 905.971 kb on - strand at 905.971 kb on - strand at 906.045 kb on + strand at 906.085 kb on + strand at 906.085 kb on + strand at 906.085 kb on + strand at 906.085 kb on + strand at 906.086 kb on - strand at 906.086 kb on - strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.146 kb on + strand, within AO353_04220 at 906.146 kb on + strand, within AO353_04220 at 906.146 kb on + strand, within AO353_04220 at 906.147 kb on - strand, within AO353_04220 at 906.147 kb on - strand, within AO353_04220 at 906.147 kb on - strand, within AO353_04220 at 906.211 kb on + strand, within AO353_04220 at 906.211 kb on + strand, within AO353_04220 at 906.211 kb on + strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.281 kb on - strand, within AO353_04220 at 906.290 kb on + strand, within AO353_04220 at 906.303 kb on + strand, within AO353_04220 at 907.013 kb on + strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.067 kb on + strand at 907.068 kb on - strand at 907.068 kb on - strand at 907.068 kb on - strand at 907.068 kb on - strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.074 kb on + strand at 907.074 kb on + strand at 907.074 kb on + strand at 907.075 kb on - strand at 907.075 kb on - strand at 907.075 kb on - strand at 907.075 kb on - strand at 907.125 kb on + strand at 907.125 kb on + strand at 907.125 kb on + strand at 907.125 kb on + strand at 907.126 kb on - strand at 907.126 kb on - strand at 907.126 kb on - strand at 907.210 kb on + strand at 907.211 kb on - strand at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.364 kb on - strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.600 kb on - strand, within AO353_04225 at 907.600 kb on - strand, within AO353_04225 at 907.600 kb on - strand, within AO353_04225 at 907.634 kb on - strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.801 kb on - strand, within AO353_04225 at 907.801 kb on - strand, within AO353_04225 at 907.952 kb on + strand, within AO353_04225 at 907.952 kb on + strand, within AO353_04225 at 907.952 kb on + strand, within AO353_04225
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 904,988 - -0.1 904,988 - +0.9 904,988 - -1.4 904,988 - +0.7 905,024 - +0.6 905,095 - AO353_04215 0.15 +0.1 905,171 + AO353_04215 0.23 -1.1 905,172 - AO353_04215 0.23 +2.9 905,172 - AO353_04215 0.23 +2.3 905,172 - AO353_04215 0.23 -0.1 905,308 + AO353_04215 0.36 -0.1 905,308 + AO353_04215 0.36 +0.4 905,308 + AO353_04215 0.36 +0.5 905,308 + AO353_04215 0.36 +0.3 905,308 + AO353_04215 0.36 -0.9 905,309 - AO353_04215 0.36 -1.4 905,309 - AO353_04215 0.36 +0.3 905,309 - AO353_04215 0.36 -0.2 905,309 - AO353_04215 0.36 +1.0 905,309 - AO353_04215 0.36 -1.6 905,320 + AO353_04215 0.38 -0.4 905,320 + AO353_04215 0.38 +0.1 905,321 - AO353_04215 0.38 -1.3 905,321 - AO353_04215 0.38 -1.2 905,392 + AO353_04215 0.45 +0.2 905,392 + AO353_04215 0.45 -0.7 905,392 + AO353_04215 0.45 -0.6 905,393 - AO353_04215 0.45 +0.4 905,393 - AO353_04215 0.45 -1.3 905,393 - AO353_04215 0.45 +1.1 905,393 - AO353_04215 0.45 +0.1 905,393 - AO353_04215 0.45 +0.4 905,414 + AO353_04215 0.47 +1.2 905,536 + AO353_04215 0.59 -1.4 905,536 + AO353_04215 0.59 +1.0 905,536 + AO353_04215 0.59 +0.6 905,536 + AO353_04215 0.59 +1.4 905,536 + AO353_04215 0.59 -0.0 905,536 + AO353_04215 0.59 -0.9 905,536 + AO353_04215 0.59 +0.3 905,536 + AO353_04215 0.59 +0.8 905,536 + AO353_04215 0.59 -0.4 905,536 + AO353_04215 0.59 -0.4 905,536 + AO353_04215 0.59 +0.7 905,536 + AO353_04215 0.59 -1.2 905,537 - AO353_04215 0.59 +0.3 905,537 - AO353_04215 0.59 -0.2 905,537 - AO353_04215 0.59 +1.1 905,537 - AO353_04215 0.59 -0.6 905,537 - AO353_04215 0.59 +0.5 905,537 - AO353_04215 0.59 +0.1 905,537 - AO353_04215 0.59 +0.1 905,537 - AO353_04215 0.59 -0.3 905,599 + AO353_04215 0.65 +0.8 905,919 - -0.2 905,919 - +0.6 905,934 + +0.5 905,934 + -0.5 905,934 + +0.1 905,934 + -0.1 905,935 - -2.4 905,935 - -1.1 905,962 - -1.5 905,970 + -0.6 905,971 - -0.6 905,971 - -0.2 905,971 - -0.6 905,971 - -1.2 906,045 + +0.2 906,085 + +0.1 906,085 + -1.3 906,085 + -0.7 906,085 + -0.2 906,086 - -1.2 906,086 - -2.2 906,087 + +0.4 906,087 + +0.5 906,087 + +1.3 906,087 + -0.0 906,087 + -0.4 906,088 - +0.5 906,088 - +0.6 906,088 - -2.5 906,088 - -1.1 906,088 - -1.6 906,088 - -3.0 906,088 - -2.4 906,124 + AO353_04220 0.13 -0.7 906,124 + AO353_04220 0.13 -0.9 906,124 + AO353_04220 0.13 -0.6 906,124 + AO353_04220 0.13 +0.8 906,124 + AO353_04220 0.13 +0.9 906,125 - AO353_04220 0.14 -2.7 906,125 - AO353_04220 0.14 -1.1 906,125 - AO353_04220 0.14 -3.2 906,125 - AO353_04220 0.14 -0.9 906,146 + AO353_04220 0.16 -1.5 906,146 + AO353_04220 0.16 -2.4 906,146 + AO353_04220 0.16 +0.9 906,147 - AO353_04220 0.16 +0.2 906,147 - AO353_04220 0.16 -0.9 906,147 - AO353_04220 0.16 -2.2 906,211 + AO353_04220 0.22 +0.1 906,211 + AO353_04220 0.22 +0.2 906,211 + AO353_04220 0.22 -2.2 906,212 - AO353_04220 0.22 -2.3 906,212 - AO353_04220 0.22 -1.6 906,212 - AO353_04220 0.22 -2.5 906,212 - AO353_04220 0.22 -1.6 906,212 - AO353_04220 0.22 -2.7 906,254 - AO353_04220 0.26 -2.2 906,254 - AO353_04220 0.26 -2.3 906,254 - AO353_04220 0.26 -2.2 906,254 - AO353_04220 0.26 -1.4 906,254 - AO353_04220 0.26 -0.5 906,281 - AO353_04220 0.29 -1.1 906,290 + AO353_04220 0.30 -1.2 906,303 + AO353_04220 0.31 -0.2 907,013 + -0.5 907,014 - +0.6 907,014 - +0.4 907,014 - +0.5 907,014 - +1.9 907,014 - -0.9 907,067 + +0.6 907,068 - -1.2 907,068 - -0.1 907,068 - +0.5 907,068 - +0.5 907,071 + +0.5 907,071 + -1.1 907,071 + -0.2 907,071 + +1.8 907,071 + -0.1 907,071 + +1.1 907,071 + -1.4 907,072 - -0.7 907,072 - +0.4 907,072 - +1.1 907,072 - +0.1 907,072 - -2.7 907,072 - +0.5 907,072 - -0.1 907,072 - +0.1 907,072 - -1.1 907,074 + +0.5 907,074 + -0.8 907,074 + -0.8 907,075 - +0.1 907,075 - -1.5 907,075 - +0.9 907,075 - -0.1 907,125 + +1.8 907,125 + +1.3 907,125 + -1.8 907,125 + -0.0 907,126 - -0.9 907,126 - +1.5 907,126 - +0.1 907,210 + -1.6 907,211 - +0.7 907,363 + AO353_04225 0.16 -0.7 907,363 + AO353_04225 0.16 -2.9 907,363 + AO353_04225 0.16 -0.4 907,363 + AO353_04225 0.16 -0.7 907,363 + AO353_04225 0.16 -0.3 907,363 + AO353_04225 0.16 +0.1 907,364 - AO353_04225 0.16 -0.9 907,599 + AO353_04225 0.26 +0.3 907,599 + AO353_04225 0.26 -1.2 907,599 + AO353_04225 0.26 +0.9 907,599 + AO353_04225 0.26 +0.7 907,600 - AO353_04225 0.26 -0.0 907,600 - AO353_04225 0.26 -0.1 907,600 - AO353_04225 0.26 -0.3 907,634 - AO353_04225 0.28 -0.1 907,800 + AO353_04225 0.35 +1.1 907,800 + AO353_04225 0.35 +0.4 907,800 + AO353_04225 0.35 +1.1 907,800 + AO353_04225 0.35 -0.8 907,801 - AO353_04225 0.35 +1.1 907,801 - AO353_04225 0.35 +0.5 907,952 + AO353_04225 0.42 +0.8 907,952 + AO353_04225 0.42 -0.7 907,952 + AO353_04225 0.42 +0.1
Or see this region's nucleotide sequence