Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03405 and AO353_03410 overlap by 11 nucleotides AO353_03410 and AO353_03415 are separated by 206 nucleotides AO353_03415 and AO353_03420 overlap by 4 nucleotides
AO353_03405: AO353_03405 - histidine kinase, at 725,463 to 726,926
_03405
AO353_03410: AO353_03410 - chemotaxis protein CheY, at 726,916 to 727,647
_03410
AO353_03415: AO353_03415 - glucokinase, at 727,854 to 728,804
_03415
AO353_03420: AO353_03420 - phosphogluconate dehydratase, at 728,801 to 730,627
_03420
Position (kb) 727
728
729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 726.937 kb on + strand at 726.937 kb on + strand at 726.938 kb on - strand at 726.938 kb on - strand at 726.938 kb on - strand at 727.280 kb on - strand, within AO353_03410 at 727.280 kb on - strand, within AO353_03410 at 727.334 kb on + strand, within AO353_03410 at 727.335 kb on - strand, within AO353_03410 at 727.577 kb on + strand at 727.577 kb on + strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.597 kb on + strand at 727.597 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.683 kb on + strand at 727.683 kb on + strand at 727.684 kb on - strand at 727.684 kb on - strand at 727.852 kb on + strand at 727.852 kb on + strand at 727.852 kb on + strand at 727.852 kb on + strand at 727.897 kb on + strand at 727.898 kb on - strand at 727.936 kb on + strand at 727.936 kb on + strand at 727.936 kb on + strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 728.029 kb on + strand at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.207 kb on - strand, within AO353_03415 at 728.269 kb on + strand, within AO353_03415 at 728.269 kb on + strand, within AO353_03415 at 728.270 kb on - strand, within AO353_03415 at 728.270 kb on - strand, within AO353_03415 at 728.270 kb on - strand, within AO353_03415 at 728.270 kb on - strand, within AO353_03415 at 728.582 kb on + strand, within AO353_03415 at 728.582 kb on + strand, within AO353_03415 at 728.671 kb on + strand, within AO353_03415 at 728.671 kb on + strand, within AO353_03415 at 728.672 kb on - strand, within AO353_03415 at 728.701 kb on + strand at 728.701 kb on + strand, within AO353_03415 at 728.701 kb on + strand, within AO353_03415 at 728.701 kb on + strand, within AO353_03415 at 728.796 kb on + strand at 728.797 kb on - strand at 728.797 kb on - strand at 728.797 kb on - strand at 728.797 kb on - strand at 728.797 kb on - strand at 728.806 kb on + strand at 728.806 kb on + strand at 728.806 kb on + strand at 728.806 kb on + strand at 728.807 kb on - strand at 728.807 kb on - strand at 728.807 kb on - strand at 728.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 726,937 + +0.8 726,937 + +0.2 726,938 - -0.0 726,938 - +1.2 726,938 - -1.5 727,280 - AO353_03410 0.50 -0.4 727,280 - AO353_03410 0.50 -0.6 727,334 + AO353_03410 0.57 +0.3 727,335 - AO353_03410 0.57 +0.2 727,577 + -1.1 727,577 + -0.3 727,578 - -1.5 727,578 - +0.7 727,578 - -0.9 727,578 - -0.2 727,578 - -1.6 727,578 - -1.6 727,597 + -2.4 727,597 + -2.3 727,667 + -0.0 727,667 + -1.1 727,667 + -0.3 727,667 + +0.1 727,667 + +2.0 727,683 + -0.5 727,683 + +0.1 727,684 - +1.7 727,684 - +1.0 727,852 + -0.2 727,852 + -0.3 727,852 + -0.3 727,852 + -0.4 727,897 + -0.8 727,898 - -1.0 727,936 + -1.1 727,936 + -0.8 727,936 + -2.1 727,937 - -0.0 727,937 - -0.8 727,937 - +1.0 727,937 - -3.2 727,937 - -1.2 727,937 - -2.3 727,937 - +0.1 728,029 + +2.0 728,029 + AO353_03415 0.18 -1.0 728,029 + AO353_03415 0.18 -2.3 728,029 + AO353_03415 0.18 -0.1 728,029 + AO353_03415 0.18 -0.5 728,029 + AO353_03415 0.18 -0.3 728,029 + AO353_03415 0.18 -1.5 728,029 + AO353_03415 0.18 -1.5 728,030 - AO353_03415 0.19 +0.3 728,030 - AO353_03415 0.19 +0.9 728,030 - AO353_03415 0.19 -1.9 728,030 - AO353_03415 0.19 -2.8 728,030 - AO353_03415 0.19 -0.2 728,030 - AO353_03415 0.19 -0.3 728,030 - AO353_03415 0.19 -0.6 728,207 - AO353_03415 0.37 -2.0 728,269 + AO353_03415 0.44 -1.3 728,269 + AO353_03415 0.44 -0.7 728,270 - AO353_03415 0.44 -1.2 728,270 - AO353_03415 0.44 -1.1 728,270 - AO353_03415 0.44 -0.8 728,270 - AO353_03415 0.44 -1.3 728,582 + AO353_03415 0.77 -1.3 728,582 + AO353_03415 0.77 +1.0 728,671 + AO353_03415 0.86 -0.8 728,671 + AO353_03415 0.86 -2.1 728,672 - AO353_03415 0.86 -0.8 728,701 + +2.0 728,701 + AO353_03415 0.89 -0.6 728,701 + AO353_03415 0.89 -0.3 728,701 + AO353_03415 0.89 +0.2 728,796 + +1.4 728,797 - +0.1 728,797 - -1.2 728,797 - -0.8 728,797 - -3.6 728,797 - -0.6 728,806 + -2.2 728,806 + +0.3 728,806 + -0.2 728,806 + -0.8 728,807 - -0.0 728,807 - +1.3 728,807 - -1.8 728,827 + +0.6
Or see this region's nucleotide sequence