Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02805 and AO353_02810 are separated by 30 nucleotides AO353_02810 and AO353_02815 overlap by 4 nucleotides AO353_02815 and AO353_02820 are separated by 239 nucleotides
AO353_02805: AO353_02805 - AraC family transcriptional regulator, at 594,667 to 595,665
_02805
AO353_02810: AO353_02810 - histidine kinase, at 595,696 to 597,042
_02810
AO353_02815: AO353_02815 - transcriptional regulator, at 597,039 to 597,716
_02815
AO353_02820: AO353_02820 - dienelactone hydrolase, at 597,956 to 598,747
_02820
Position (kb) 595
596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 594.733 kb on + strand at 594.734 kb on - strand at 594.862 kb on + strand, within AO353_02805 at 594.863 kb on - strand, within AO353_02805 at 594.966 kb on - strand, within AO353_02805 at 594.966 kb on - strand, within AO353_02805 at 594.968 kb on + strand, within AO353_02805 at 594.968 kb on + strand, within AO353_02805 at 594.968 kb on + strand, within AO353_02805 at 594.973 kb on + strand, within AO353_02805 at 594.973 kb on + strand, within AO353_02805 at 594.973 kb on + strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.975 kb on + strand, within AO353_02805 at 594.975 kb on + strand, within AO353_02805 at 594.976 kb on - strand, within AO353_02805 at 594.976 kb on - strand, within AO353_02805 at 594.976 kb on - strand, within AO353_02805 at 594.976 kb on - strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 595.163 kb on - strand, within AO353_02805 at 595.190 kb on - strand, within AO353_02805 at 595.190 kb on - strand, within AO353_02805 at 595.290 kb on + strand, within AO353_02805 at 595.290 kb on + strand, within AO353_02805 at 595.290 kb on + strand, within AO353_02805 at 595.291 kb on - strand, within AO353_02805 at 595.291 kb on - strand, within AO353_02805 at 595.291 kb on - strand, within AO353_02805 at 595.370 kb on + strand, within AO353_02805 at 595.370 kb on + strand, within AO353_02805 at 595.370 kb on + strand, within AO353_02805 at 595.370 kb on + strand, within AO353_02805 at 595.371 kb on - strand, within AO353_02805 at 595.528 kb on + strand, within AO353_02805 at 595.528 kb on + strand, within AO353_02805 at 595.528 kb on + strand, within AO353_02805 at 595.529 kb on - strand, within AO353_02805 at 595.529 kb on - strand, within AO353_02805 at 595.663 kb on + strand at 595.663 kb on + strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.770 kb on - strand at 596.024 kb on + strand, within AO353_02810 at 596.024 kb on + strand, within AO353_02810 at 596.024 kb on + strand, within AO353_02810 at 596.024 kb on + strand, within AO353_02810 at 596.024 kb on + strand, within AO353_02810 at 596.025 kb on - strand, within AO353_02810 at 596.025 kb on - strand, within AO353_02810 at 596.025 kb on - strand, within AO353_02810 at 596.148 kb on + strand, within AO353_02810 at 596.148 kb on + strand, within AO353_02810 at 596.149 kb on - strand, within AO353_02810 at 596.175 kb on - strand, within AO353_02810 at 596.543 kb on + strand, within AO353_02810 at 596.579 kb on + strand, within AO353_02810 at 596.579 kb on + strand, within AO353_02810 at 596.607 kb on + strand, within AO353_02810 at 596.626 kb on - strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.655 kb on - strand, within AO353_02810 at 596.655 kb on - strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.796 kb on - strand, within AO353_02810 at 596.796 kb on - strand, within AO353_02810 at 596.796 kb on - strand, within AO353_02810 at 596.887 kb on + strand, within AO353_02810 at 596.887 kb on + strand, within AO353_02810 at 597.064 kb on + strand at 597.064 kb on + strand at 597.065 kb on - strand at 597.238 kb on + strand, within AO353_02815 at 597.238 kb on + strand, within AO353_02815 at 597.239 kb on - strand, within AO353_02815 at 597.239 kb on - strand, within AO353_02815 at 597.239 kb on - strand, within AO353_02815 at 597.260 kb on - strand, within AO353_02815 at 597.350 kb on + strand, within AO353_02815 at 597.424 kb on + strand, within AO353_02815 at 597.424 kb on + strand, within AO353_02815 at 597.424 kb on + strand, within AO353_02815 at 597.425 kb on - strand, within AO353_02815 at 597.425 kb on - strand at 597.425 kb on - strand, within AO353_02815 at 597.425 kb on - strand, within AO353_02815 at 597.604 kb on + strand, within AO353_02815 at 597.604 kb on + strand, within AO353_02815 at 597.604 kb on + strand, within AO353_02815 at 597.605 kb on - strand, within AO353_02815 at 597.605 kb on - strand, within AO353_02815 at 597.605 kb on - strand at 597.605 kb on - strand, within AO353_02815 at 597.752 kb on + strand at 597.752 kb on + strand at 597.753 kb on - strand at 597.753 kb on - strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.772 kb on - strand at 597.772 kb on - strand at 597.772 kb on - strand at 597.772 kb on - strand at 597.774 kb on + strand at 597.774 kb on + strand at 597.774 kb on + strand at 597.774 kb on + strand at 597.775 kb on - strand at 597.775 kb on - strand at 597.775 kb on - strand at 597.852 kb on + strand at 597.853 kb on - strand at 597.853 kb on - strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.882 kb on - strand at 597.920 kb on + strand at 597.920 kb on + strand at 597.921 kb on - strand at 597.940 kb on + strand at 597.940 kb on + strand at 597.941 kb on - strand at 597.941 kb on - strand at 597.963 kb on + strand at 597.964 kb on - strand at 597.981 kb on + strand at 597.981 kb on + strand at 597.982 kb on - strand at 598.034 kb on + strand at 598.034 kb on + strand at 598.034 kb on + strand at 598.034 kb on + strand at 598.035 kb on - strand at 598.035 kb on - strand at 598.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 594,733 + -1.5 594,734 - -0.3 594,862 + AO353_02805 0.20 -0.8 594,863 - AO353_02805 0.20 -0.3 594,966 - AO353_02805 0.30 +0.4 594,966 - AO353_02805 0.30 +1.7 594,968 + AO353_02805 0.30 +0.3 594,968 + AO353_02805 0.30 -0.2 594,968 + AO353_02805 0.30 -0.3 594,973 + AO353_02805 0.31 -0.6 594,973 + AO353_02805 0.31 -0.6 594,973 + AO353_02805 0.31 +0.4 594,974 - AO353_02805 0.31 +0.7 594,974 - AO353_02805 0.31 +0.8 594,974 - AO353_02805 0.31 +0.4 594,974 - AO353_02805 0.31 +1.1 594,974 - AO353_02805 0.31 -0.5 594,975 + AO353_02805 0.31 -0.2 594,975 + AO353_02805 0.31 +1.4 594,976 - AO353_02805 0.31 -1.4 594,976 - AO353_02805 0.31 +0.0 594,976 - AO353_02805 0.31 -0.8 594,976 - AO353_02805 0.31 +0.2 594,980 + AO353_02805 0.31 +1.9 594,980 + AO353_02805 0.31 +0.8 594,980 + AO353_02805 0.31 +0.9 594,980 + AO353_02805 0.31 +0.6 594,980 + AO353_02805 0.31 +0.9 594,981 - AO353_02805 0.31 +0.1 594,981 - AO353_02805 0.31 +1.2 594,981 - AO353_02805 0.31 +0.8 594,981 - AO353_02805 0.31 +0.5 594,981 - AO353_02805 0.31 +0.4 595,163 - AO353_02805 0.50 +0.4 595,190 - AO353_02805 0.52 -0.4 595,190 - AO353_02805 0.52 -1.4 595,290 + AO353_02805 0.62 +0.6 595,290 + AO353_02805 0.62 +0.9 595,290 + AO353_02805 0.62 -1.9 595,291 - AO353_02805 0.62 +0.0 595,291 - AO353_02805 0.62 +1.7 595,291 - AO353_02805 0.62 -1.6 595,370 + AO353_02805 0.70 -0.4 595,370 + AO353_02805 0.70 -0.1 595,370 + AO353_02805 0.70 -0.1 595,370 + AO353_02805 0.70 -1.6 595,371 - AO353_02805 0.70 -0.3 595,528 + AO353_02805 0.86 +0.1 595,528 + AO353_02805 0.86 -0.1 595,528 + AO353_02805 0.86 +0.8 595,529 - AO353_02805 0.86 -0.6 595,529 - AO353_02805 0.86 +1.4 595,663 + +0.7 595,663 + -0.9 595,664 - -0.6 595,664 - -1.1 595,664 - +1.2 595,664 - -0.1 595,664 - -0.3 595,664 - -0.3 595,664 - -1.3 595,664 - -0.1 595,664 - +1.1 595,770 - -2.4 596,024 + AO353_02810 0.24 -1.2 596,024 + AO353_02810 0.24 -2.3 596,024 + AO353_02810 0.24 -0.6 596,024 + AO353_02810 0.24 -1.7 596,024 + AO353_02810 0.24 +1.1 596,025 - AO353_02810 0.24 -0.9 596,025 - AO353_02810 0.24 -0.1 596,025 - AO353_02810 0.24 +0.8 596,148 + AO353_02810 0.34 -1.0 596,148 + AO353_02810 0.34 -1.5 596,149 - AO353_02810 0.34 -2.0 596,175 - AO353_02810 0.36 -1.2 596,543 + AO353_02810 0.63 -1.3 596,579 + AO353_02810 0.66 -0.3 596,579 + AO353_02810 0.66 -3.4 596,607 + AO353_02810 0.68 -1.5 596,626 - AO353_02810 0.69 -2.1 596,654 + AO353_02810 0.71 -1.6 596,654 + AO353_02810 0.71 -1.2 596,654 + AO353_02810 0.71 +0.4 596,654 + AO353_02810 0.71 +0.6 596,655 - AO353_02810 0.71 -2.1 596,655 - AO353_02810 0.71 +1.7 596,789 + AO353_02810 0.81 -2.8 596,789 + AO353_02810 0.81 -2.4 596,789 + AO353_02810 0.81 -0.5 596,789 + AO353_02810 0.81 -1.1 596,789 + AO353_02810 0.81 -2.9 596,789 + AO353_02810 0.81 -0.3 596,789 + AO353_02810 0.81 +0.4 596,789 + AO353_02810 0.81 -0.3 596,789 + AO353_02810 0.81 -1.9 596,790 - AO353_02810 0.81 +0.5 596,790 - AO353_02810 0.81 -0.6 596,790 - AO353_02810 0.81 -2.0 596,790 - AO353_02810 0.81 -2.3 596,795 + AO353_02810 0.82 +1.1 596,795 + AO353_02810 0.82 -0.5 596,795 + AO353_02810 0.82 -0.9 596,795 + AO353_02810 0.82 -1.0 596,795 + AO353_02810 0.82 -2.0 596,796 - AO353_02810 0.82 +0.1 596,796 - AO353_02810 0.82 -1.2 596,796 - AO353_02810 0.82 +0.1 596,887 + AO353_02810 0.88 -0.3 596,887 + AO353_02810 0.88 -0.5 597,064 + -1.0 597,064 + +0.0 597,065 - -0.6 597,238 + AO353_02815 0.29 +1.8 597,238 + AO353_02815 0.29 -0.3 597,239 - AO353_02815 0.29 -1.1 597,239 - AO353_02815 0.29 -0.8 597,239 - AO353_02815 0.29 -1.1 597,260 - AO353_02815 0.33 -0.9 597,350 + AO353_02815 0.46 -0.3 597,424 + AO353_02815 0.57 -0.1 597,424 + AO353_02815 0.57 -0.0 597,424 + AO353_02815 0.57 -1.4 597,425 - AO353_02815 0.57 +0.1 597,425 - -0.4 597,425 - AO353_02815 0.57 -1.2 597,425 - AO353_02815 0.57 +0.6 597,604 + AO353_02815 0.83 -0.3 597,604 + AO353_02815 0.83 -0.1 597,604 + AO353_02815 0.83 -1.1 597,605 - AO353_02815 0.83 -0.6 597,605 - AO353_02815 0.83 -1.5 597,605 - +1.9 597,605 - AO353_02815 0.83 +0.4 597,752 + -0.5 597,752 + -0.1 597,753 - -1.3 597,753 - -0.8 597,771 + +0.8 597,771 + -0.4 597,771 + +0.8 597,771 + +0.2 597,771 + -0.1 597,772 - -0.3 597,772 - +1.2 597,772 - -0.4 597,772 - -1.8 597,774 + -0.9 597,774 + +0.8 597,774 + -0.9 597,774 + +0.7 597,775 - -2.2 597,775 - +0.8 597,775 - -0.3 597,852 + -0.5 597,853 - -0.3 597,853 - -0.1 597,876 + +0.0 597,876 + +0.4 597,876 + -0.4 597,876 + +0.7 597,876 + +0.4 597,876 + +0.4 597,876 + +1.8 597,876 + +1.6 597,876 + -0.1 597,876 + +1.9 597,876 + -1.1 597,876 + -1.4 597,876 + -0.1 597,877 - +0.3 597,877 - -3.1 597,877 - -2.6 597,877 - +0.4 597,877 - -1.2 597,877 - -0.1 597,877 - -0.5 597,877 - -0.5 597,877 - -0.6 597,877 - -1.1 597,877 - -1.5 597,877 - -0.1 597,882 - +0.6 597,920 + -1.2 597,920 + -1.8 597,921 - -0.5 597,940 + -0.9 597,940 + +1.2 597,941 - +0.2 597,941 - -0.5 597,963 + -1.6 597,964 - -2.1 597,981 + -1.8 597,981 + -0.4 597,982 - +0.4 598,034 + +0.7 598,034 + -0.6 598,034 + +1.9 598,034 + -0.9 598,035 - +0.1 598,035 - +0.2 598,035 - +1.1
Or see this region's nucleotide sequence