Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02715

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_02710 and AO353_02715 are separated by 122 nucleotidesAO353_02715 and AO353_02720 overlap by 1 nucleotides AO353_02710: AO353_02710 - (p)ppGpp synthetase, at 574,778 to 577,021 _02710 AO353_02715: AO353_02715 - 23S rRNA methyltransferase, at 577,144 to 578,496 _02715 AO353_02720: AO353_02720 - cysteine synthase, at 578,496 to 579,398 _02720 Position (kb) 577 578 579Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 576.168 kb on + strand, within AO353_02710at 576.168 kb on + strand, within AO353_02710at 576.169 kb on - strand, within AO353_02710at 576.169 kb on - strand, within AO353_02710at 576.169 kb on - strand, within AO353_02710at 576.219 kb on + strand, within AO353_02710at 576.219 kb on + strand, within AO353_02710at 576.219 kb on + strand, within AO353_02710at 576.220 kb on - strand, within AO353_02710at 576.220 kb on - strand, within AO353_02710at 576.220 kb on - strand, within AO353_02710at 576.220 kb on - strand, within AO353_02710at 576.220 kb on - strand, within AO353_02710at 576.220 kb on - strand, within AO353_02710at 576.220 kb on - strand, within AO353_02710at 576.357 kb on + strand, within AO353_02710at 576.357 kb on + strand, within AO353_02710at 576.357 kb on + strand, within AO353_02710at 576.357 kb on + strand, within AO353_02710at 576.358 kb on - strand, within AO353_02710at 576.358 kb on - strand, within AO353_02710at 576.358 kb on - strand, within AO353_02710at 576.358 kb on - strand, within AO353_02710at 576.358 kb on - strand, within AO353_02710at 576.358 kb on - strand, within AO353_02710at 576.409 kb on + strand, within AO353_02710at 576.410 kb on - strand, within AO353_02710at 576.410 kb on - strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.444 kb on + strand, within AO353_02710at 576.445 kb on - strand, within AO353_02710at 576.445 kb on - strand, within AO353_02710at 576.445 kb on - strand, within AO353_02710at 576.445 kb on - strand, within AO353_02710at 576.445 kb on - strand, within AO353_02710at 576.445 kb on - strand, within AO353_02710at 576.445 kb on - strand, within AO353_02710at 576.445 kb on - strand, within AO353_02710at 576.823 kb on + strandat 576.977 kb on - strandat 577.017 kb on - strandat 577.028 kb on + strandat 577.028 kb on + strandat 577.028 kb on + strandat 577.028 kb on + strandat 577.029 kb on - strandat 577.029 kb on - strandat 577.029 kb on - strandat 577.029 kb on - strandat 577.029 kb on - strandat 577.037 kb on + strandat 577.038 kb on - strandat 577.145 kb on + strandat 577.145 kb on + strandat 577.145 kb on + strandat 577.145 kb on + strandat 577.145 kb on + strandat 577.145 kb on + strandat 577.145 kb on + strandat 577.145 kb on + strandat 577.146 kb on - strandat 577.146 kb on - strandat 577.146 kb on - strandat 577.146 kb on - strandat 577.146 kb on - strandat 577.146 kb on - strandat 577.160 kb on - strandat 577.160 kb on - strandat 577.197 kb on + strandat 577.198 kb on - strandat 577.198 kb on - strandat 577.219 kb on + strandat 577.219 kb on + strandat 577.219 kb on + strandat 577.286 kb on + strand, within AO353_02715at 577.286 kb on + strand, within AO353_02715at 577.286 kb on + strand, within AO353_02715at 577.286 kb on + strand, within AO353_02715at 577.286 kb on + strand, within AO353_02715at 577.286 kb on + strand, within AO353_02715at 577.286 kb on + strand, within AO353_02715at 577.286 kb on + strand, within AO353_02715at 577.286 kb on + strand, within AO353_02715at 577.287 kb on - strand, within AO353_02715at 577.287 kb on - strand, within AO353_02715at 577.287 kb on - strand, within AO353_02715at 577.441 kb on - strand, within AO353_02715at 577.549 kb on - strand, within AO353_02715at 577.948 kb on + strand, within AO353_02715at 577.948 kb on + strand, within AO353_02715at 578.355 kb on + strand, within AO353_02715at 578.355 kb on + strand, within AO353_02715at 578.356 kb on - strand, within AO353_02715at 578.530 kb on + strandat 578.607 kb on + strand, within AO353_02720at 578.726 kb on - strand, within AO353_02720at 578.726 kb on - strand, within AO353_02720at 578.726 kb on - strand, within AO353_02720at 578.726 kb on - strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.741 kb on - strand, within AO353_02720at 578.741 kb on - strand, within AO353_02720at 578.833 kb on + strand, within AO353_02720at 578.888 kb on + strand, within AO353_02720at 578.889 kb on - strand, within AO353_02720at 578.889 kb on - strand, within AO353_02720at 578.935 kb on + strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 579.284 kb on + strand, within AO353_02720at 579.386 kb on - strandat 579.404 kb on - strandat 579.436 kb on + strandat 579.436 kb on + strandat 579.437 kb on - strandat 579.496 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
576,168 + AO353_02710 0.62 -2.2
576,168 + AO353_02710 0.62 -3.5
576,169 - AO353_02710 0.62 -0.9
576,169 - AO353_02710 0.62 -1.2
576,169 - AO353_02710 0.62 -1.9
576,219 + AO353_02710 0.64 -0.6
576,219 + AO353_02710 0.64 -2.2
576,219 + AO353_02710 0.64 -0.1
576,220 - AO353_02710 0.64 -1.5
576,220 - AO353_02710 0.64 -2.6
576,220 - AO353_02710 0.64 -1.9
576,220 - AO353_02710 0.64 -2.1
576,220 - AO353_02710 0.64 -2.8
576,220 - AO353_02710 0.64 -1.6
576,220 - AO353_02710 0.64 -1.5
576,357 + AO353_02710 0.70 -2.4
576,357 + AO353_02710 0.70 -1.4
576,357 + AO353_02710 0.70 -2.3
576,357 + AO353_02710 0.70 -2.8
576,358 - AO353_02710 0.70 -1.5
576,358 - AO353_02710 0.70 -1.6
576,358 - AO353_02710 0.70 -1.2
576,358 - AO353_02710 0.70 -2.2
576,358 - AO353_02710 0.70 -2.4
576,358 - AO353_02710 0.70 -2.7
576,409 + AO353_02710 0.73 -2.1
576,410 - AO353_02710 0.73 -2.2
576,410 - AO353_02710 0.73 -1.2
576,444 + AO353_02710 0.74 -2.4
576,444 + AO353_02710 0.74 -3.8
576,444 + AO353_02710 0.74 -2.4
576,444 + AO353_02710 0.74 -1.8
576,444 + AO353_02710 0.74 -2.4
576,444 + AO353_02710 0.74 -2.4
576,444 + AO353_02710 0.74 -1.6
576,444 + AO353_02710 0.74 -1.2
576,444 + AO353_02710 0.74 -1.8
576,444 + AO353_02710 0.74 -1.8
576,445 - AO353_02710 0.74 -0.6
576,445 - AO353_02710 0.74 -3.4
576,445 - AO353_02710 0.74 -2.3
576,445 - AO353_02710 0.74 -0.6
576,445 - AO353_02710 0.74 -0.7
576,445 - AO353_02710 0.74 +0.1
576,445 - AO353_02710 0.74 -2.3
576,445 - AO353_02710 0.74 -2.6
576,823 + -2.1
576,977 - +0.9
577,017 - -3.6
577,028 + -2.2
577,028 + -0.1
577,028 + -2.7
577,028 + -1.9
577,029 - +1.4
577,029 - -2.1
577,029 - -0.6
577,029 - -2.7
577,029 - -0.9
577,037 + -0.1
577,038 - -0.6
577,145 + -0.1
577,145 + -2.4
577,145 + -0.2
577,145 + -1.6
577,145 + -0.4
577,145 + +0.6
577,145 + -1.4
577,145 + -3.1
577,146 - +0.4
577,146 - -0.9
577,146 - -1.8
577,146 - +0.3
577,146 - -0.5
577,146 - +2.3
577,160 - +0.6
577,160 - +0.2
577,197 + -2.2
577,198 - +1.9
577,198 - -0.8
577,219 + -1.4
577,219 + -2.0
577,219 + -1.4
577,286 + AO353_02715 0.10 -2.1
577,286 + AO353_02715 0.10 -2.3
577,286 + AO353_02715 0.10 -0.1
577,286 + AO353_02715 0.10 -2.3
577,286 + AO353_02715 0.10 -0.9
577,286 + AO353_02715 0.10 -1.8
577,286 + AO353_02715 0.10 -1.1
577,286 + AO353_02715 0.10 -2.5
577,286 + AO353_02715 0.10 -1.6
577,287 - AO353_02715 0.11 -1.6
577,287 - AO353_02715 0.11 -1.1
577,287 - AO353_02715 0.11 +1.2
577,441 - AO353_02715 0.22 +3.5
577,549 - AO353_02715 0.30 -1.6
577,948 + AO353_02715 0.59 +0.8
577,948 + AO353_02715 0.59 +0.2
578,355 + AO353_02715 0.90 -0.6
578,355 + AO353_02715 0.90 -0.0
578,356 - AO353_02715 0.90 +1.7
578,530 + -0.1
578,607 + AO353_02720 0.12 -0.4
578,726 - AO353_02720 0.25 -2.3
578,726 - AO353_02720 0.25 -1.2
578,726 - AO353_02720 0.25 -2.1
578,726 - AO353_02720 0.25 -3.0
578,740 + AO353_02720 0.27 -2.2
578,740 + AO353_02720 0.27 -1.8
578,740 + AO353_02720 0.27 -0.2
578,740 + AO353_02720 0.27 -2.0
578,740 + AO353_02720 0.27 -1.6
578,741 - AO353_02720 0.27 -0.9
578,741 - AO353_02720 0.27 -2.4
578,833 + AO353_02720 0.37 -2.6
578,888 + AO353_02720 0.43 -2.0
578,889 - AO353_02720 0.44 -1.9
578,889 - AO353_02720 0.44 -1.5
578,935 + AO353_02720 0.49 -1.4
578,936 - AO353_02720 0.49 -0.7
578,936 - AO353_02720 0.49 -0.6
578,936 - AO353_02720 0.49 -2.9
578,936 - AO353_02720 0.49 +0.1
578,936 - AO353_02720 0.49 -1.6
579,284 + AO353_02720 0.87 -2.5
579,386 - +0.4
579,404 - +0.7
579,436 + -0.4
579,436 + +0.5
579,437 - -1.1
579,496 - +0.5

Or see this region's nucleotide sequence